Triplophysa rosa: 130553440
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Entry
130553440 CDS
T09216
Symbol
rfc1
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
tros
Triplophysa rosa
Pathway
tros03030
DNA replication
tros03410
Base excision repair
tros03420
Nucleotide excision repair
tros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
130553440 (rfc1)
03410 Base excision repair
130553440 (rfc1)
03420 Nucleotide excision repair
130553440 (rfc1)
03430 Mismatch repair
130553440 (rfc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tros03032
]
130553440 (rfc1)
03400 DNA repair and recombination proteins [BR:
tros03400
]
130553440 (rfc1)
DNA replication proteins [BR:
tros03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
130553440 (rfc1)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
130553440 (rfc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_5
AAA_22
AAA_7
AAA_33
AAA_30
AAA_16
RuvB_N
Rad17
BRCT_2
AAA_14
AAA_17
nSTAND3
AAA_18
NTPase_1
AAA_19
RNA_helicase
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
130553440
NCBI-ProteinID:
XP_057188388
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Position
LG4:complement(11927704..11941021)
Genome browser
AA seq
1143 aa
AA seq
DB search
MDIRRFFAPTKLAAPKPLNGSSGTDEEPKKKQKSKTKVKSPKADEKPTGKRKKRAIIDSD
SDEDKKERKTKKSSKEVSAPPEKKHPVTYVSDSDSDDSFLSLKKSSKPKQNGTAKSKKES
DSGKTKEVKASSASSKSPGKSPTATVKAGLKSSQPTISPKTGPTLPKQTLTSVMDFFGSS
SVQRSDKKMVASAKRKAATQDAEGSLSDEAIARELQMDEDMDKEKQIHDDEEFARTLAML
DEAPLAKKARVDSVSPSKSSSQQNSSDTKAKIKKPSPKKSPVKTSSKLAQMKRRQEEEHE
EKKKGKGEKQIKISPKKEFISPYSSERAATPRIGSASEGTTKSKSFSTRKGDAPSKTSPT
KPENTSPEDLEKKRANTSAYRSYLNRDGPRSLGSKEIPQGAEKCLEGCVFVLTGVLESME
RDDAKSLIERYGGKVTGNVSRKTTYLVLGRDSGASKTEKAESFGTKIINEDELLELIRTK
PGKKSKYEIAAKAESKSATAKTPNSRGKRTPPAKKATPQGPSPNKRRSPSAWKSNSGSKT
SVASRSSSDVKKSLSYDQTKTTSSASHSTPESDGNSLLWVDKYRPRSLKNLIGQQGDQSC
ANKLIRWLQKWHRHHGGNGKAPPVKFSKFGSKDDGSGFKAALLSGPPGVGKTTTAALVCE
ELGYSYVEMNASCTRSKNSLKQVIAESLNNTSIKNFYTGASKTVSSKHVLIMDEVDGMAG
NEDRGGIQEMIGLIKQSKIPIICMCNDRNHQKIRSLANYCYDLRFQRPRVEQIKAAVMSI
AFKEGLKIPPPAVNEIILASNQDIRQVLHNLSMWSAKDKVMTYDQAKADANNAKKDMKLG
PFDVCRKVFASGEETAHMSLIDKSDLFFHDYSLAPLFVQENYIHVRPVAAGGNLKNHLVL
LSKAADSICDGDLVDKQIRSRQTWSLLPTQAIYASVLPGELMRGYMSQFPTFPSWLGKFS
STGRYSRTIQELASHTSLKTLSSKEAINLDYLPYLRSAILEPLQSQGAEGANQSVKLMDD
YDIIKEDVDNMMEISTWGGQPDPYSKLDSKVKAAFTRAYNKESHLTPYSLHIVKKSRKGA
VDPELVGELGGESQVQGEEEDDDGLIADAMIKQKKTKPAKKDAKQGKAGDSGKGKGKGKT
RGT
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atggacatccggaggttttttgcgcccaccaaacttgcagcgccaaaacctttaaacgga
agcagcggcaccgatgaagagccgaagaagaaacaaaaatcaaagaccaaggtcaaaagt
cctaaagctgatgagaaacccactggaaaacgaaagaaaagagccattatcgattcagac
tctgatgaagacaagaaagagaggaagaccaagaaaagctctaaagaggtttctgctcca
ccagaaaagaaacatccagttacttatgtgtctgattctgattcagatgattcatttttg
tctctgaaaaagtcctcgaaacccaaacaaaatggtacggctaagagcaaaaaggaatcg
gactcaggaaaaacaaaagaggtcaaggcatcttctgcatcgtctaaatctccggggaaa
tccccgactgccaccgtgaaggcagggttgaagagttctcagcccaccatctccccaaag
acaggaccgaccctgcctaaacagacactcacctcagtaatggacttttttgggagctca
agtgttcagaggtcggacaagaaaatggtggccagcgccaagaggaaagctgccacacaa
gatgctgaaggctcgctcagtgatgaagccattgcaagagaacttcagatggatgaagat
atggataaggagaagcagattcatgatgatgaggaatttgcaagaacattagctatgctt
gatgaagcccccttagcaaaaaaggctcgtgttgattcagtctccccctccaagagcagc
tctcagcaaaattcctcagacaccaaagccaagataaagaagccatctcctaaaaaaagc
cctgtcaagactagctccaaactggctcaaatgaaaagacgacaagaagaagagcatgag
gagaagaaaaaaggcaaaggcgaaaagcagattaagatctccccgaagaaagagttcatc
tcaccgtatagctcagaacgggcagccactcccagaattggaagtgcttcagagggaacg
acaaaatcaaaaagtttttccacgcgtaaaggagatgcacctagtaaaacctcaccaaca
aaaccagagaatacaagtcctgaagacctagagaagaaacgggcaaacacatcggcctac
cgaagctatctgaacagagatggcccacggtcactgggctctaaagagataccacaggga
gcagagaaatgtctggagggctgtgtgtttgtgttgacgggcgtgttagagtctatggaa
agggatgatgctaagtcgctaatagagcgttacggcgggaaggtcacaggaaacgtcagc
cgcaaaaccacttaccttgttctgggacgagacagtggagcctcaaaaacagagaaggcg
gagagttttggcactaagatcattaatgaagatgagttgctggagctcataagaaccaaa
ccaggcaaaaagtcgaagtatgaaattgcagcgaaggccgagagtaaatctgctacagca
aagaccccgaattctagaggcaaacgcactcctccagccaagaaggccacgccacaaggg
cccagccccaacaagagaagaagcccttcagcttggaaatctaattctggctctaaaaca
tctgtggcctctcgctcaagttcagacgtcaaaaaaagtttgagttacgatcagactaag
acaacatcatccgcatctcactccaccccagaaagtgatggaaacagcctgttgtgggtg
gataaatatcgtccccgcagtctgaagaatctgatcgggcagcagggggatcagagctgt
gcgaacaaacttatacgatggttacagaagtggcacagacatcacggtggcaatggaaaa
gcaccaccggtcaagtttagtaagtttgggagcaaagatgatggatccgggttcaaagct
gctctgttgtctggacctcctggtgtcgggaagaccactaccgctgctctcgtctgtgag
gagttgggttacagctacgtggagatgaatgccagttgcacccgcagcaagaacagctta
aaacaagtgattgccgaatcactcaacaacaccagcattaagaacttctacaccggtgca
tcaaagacagtgagcagtaaacacgtcctcataatggacgaggtggacgggatggcagga
aatgaagacagagggggaatacaggagatgattggtctgataaagcagtcgaagattccc
atcatctgcatgtgtaatgaccggaatcatcagaagatccgctcgctggccaactactgc
tacgacctgcgctttcagagaccccgtgtggagcagattaaggcggcagtgatgtctata
gctttcaaagaggggctgaagatcccacccccagcagttaatgaaatcatcctggcttcc
aatcaggatattcgacaggtgctgcataacctgagcatgtggtcggctaaagataaagtc
atgacctatgaccaggccaaagctgatgctaataatgctaagaaggacatgaaactgggt
ccgtttgatgtgtgccggaaggtattcgcctcgggagaagaaaccgcccacatgtctttg
attgacaagtcagaccttttcttccatgactactcattagcaccgctttttgtacaagag
aactacattcacgtccgaccggtggcggcagggggaaatctaaagaatcatttggtgttg
ttgagtaaagcagcagacagtatttgtgatggagatctagtggacaaacagatccgctcc
agacaaacctggtctctgcttcccacacaggcgatctatgccagcgtgttgccaggggaa
ctgatgcggggatatatgagtcagtttccaacttttcccagctggttgggcaagttctca
tcgactggcagatacagtcgcaccatacaggagcttgcttcacacacaagtctaaagacg
ctaagtagtaaggaagcaataaatctggattatctaccatatttgcgctcggcaatattg
gagccacttcagtcccaaggcgcagagggagccaatcagagcgtgaagcttatggacgat
tatgacatcatcaaagaggatgttgataacatgatggagatcagcacatggggtggacag
ccagatccttactccaaactagattctaaggtgaaagctgcgtttacacgggcatacaat
aaggaatctcatctaaccccttactccttacacattgtcaagaaaagccgtaaaggggcc
gttgaccctgagctcgtaggagaacttggcggtgaatctcaggtccagggagaggaagag
gatgatgacggactcatcgcagatgccatgatcaagcagaagaaaaccaaaccagcgaaa
aaagatgccaagcaggggaaagcaggggattctgggaaggggaaagggaagggaaagacc
agaggaacataa
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integrated database retrieval system
