Triplophysa rosa: 130553709
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Entry
130553709 CDS
T09216
Symbol
sox1b
Name
(RefSeq) transcription factor Sox-1b
KO
K09267
transcription factor SOX1/3/14/21 (SOX group B)
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tros03000
]
130553709 (sox1b)
Transcription factors [BR:
tros03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
130553709 (sox1b)
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GFIT
Motif
Pfam:
SOXp
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
130553709
NCBI-ProteinID:
XP_057188825
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Position
LG4:complement(28785677..28787794)
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AA seq
340 aa
AA seq
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MYSMMMETDLHSPVPQTNTNTGYTGPNSGSKVNQDRVKRPMNAFMVWSRGQRRKMAQENP
KMHNSEISKRLGAEWKVMTEAEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKTKTLLKKDK
YSLAGGLLAGSGGGGGMGMGMGAVGVGQRLESPVGHVGSAAASYAHMNGWTNGAYSGQVA
AAAAAAAMMQEAQLAYGQHPGSGAHHHHGHHHHPHNPQHMHRYEMTALQYSPISNSQSYM
SASPSGYGGISYTQHQNSSVASSGAIGTLGSLVKSEPSVSPPVTTHSRAPCSGDLREMIS
MYLPTAETGDPSVQSRLHAVPQHYQSSTTGVNGTVPLTHM
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atgtatagcatgatgatggaaacggacttacattctcctgtgccccagaccaacacgaac
acgggatacacgggacccaacagcgggagcaaagttaaccaagaccgcgtaaagagaccc
atgaacgcgtttatggtctggtcccggggtcagcgcagaaagatggctcaggagaacccc
aaaatgcacaactcggagatcagcaagcgcctcggagccgagtggaaagtaatgaccgag
gcggaaaagcgacccttcattgacgaggcgaaaagattgcgcgccatgcacatgaaggag
cacccggattacaagtaccgaccccgaagaaagaccaagacgctgctcaaaaaagacaaa
tactcgttggccggtggcctgctcgctggatccggtggcggaggcggcatgggtatggga
atgggtgcagtaggggtcgggcagaggttagagagtccagtgggtcatgttggtagcgcc
gcggcgagctacgcgcacatgaacggatggaccaacggtgcgtactcgggccaggtggcc
gcagccgcggctgccgcggcgatgatgcaagaggctcagctcgcctacggtcagcacccg
ggcagcggtgcgcatcaccaccacgggcaccaccaccacccccacaacccgcagcatatg
caccgctacgaaatgactgctctccagtacagccccatctcaaactctcagagttacatg
agcgcatcgccgtcgggatatgggggaatatcctacacgcaacaccaaaactccagcgtg
gcttcgtcgggggccatcggcacactgggatctctggtgaaatcggaaccgagcgtgagc
cctcccgttacaactcactctagagcgccgtgttccggagatttgcgagagatgataagc
atgtacttaccgacggcggagacaggtgacccgtccgttcagagcagacttcacgctgtg
ccacagcactatcaaagttccacgacaggcgtgaacggaaccgttcctctgacgcacatg
tga
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