Triplophysa rosa: 130554037
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Entry
130554037 CDS
T09216
Symbol
neo1a
Name
(RefSeq) neogenin 1a isoform X1
KO
K06766
neogenin
Organism
tros
Triplophysa rosa
Pathway
tros04350
TGF-beta signaling pathway
tros04514
Cell adhesion molecule (CAM) interaction
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
130554037 (neo1a)
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
130554037 (neo1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tros04515
]
130554037 (neo1a)
Cell adhesion molecules [BR:
tros04515
]
Immunoglobulin superfamily
DCC/UNC5 family
130554037 (neo1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Neogenin_C
fn3
I-set
Ig_3
Ig_2
ig
Pur_ac_phosph_N
FN3_DSCAM-DSCAML_C
Fn3_VIN3
V-set
Ig_Rha78A_N
NDNF
C2-set_2
fn3_SORL1
C1-set
GH101_dom-5
Sp38
V-set_CD47
EphA2_TM
TMEM154
CD34_antigen
Motif
Other DBs
NCBI-GeneID:
130554037
NCBI-ProteinID:
XP_057189410
LinkDB
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Position
LG1:32458461..32595335
Genome browser
AA seq
1449 aa
AA seq
DB search
MAERLLVAVFCLTITLSHAEKGSAVRNFSPFWFSTEPSDTLAVRGAPALLNCSVHGETPA
KIEWRKDGSFLNLASDERRQILADGSLLITSVVHSKHNKPDEGVYQCVATIDTLGTIISH
TARLSVAGIPRYLSQPEAALVRVGDNQVLSCEVNPDLVSFIQWERNKELVQLDERVFVLS
NGALVISNATETDAGLYRCVIENAGPIKTSEEAEIQILPETGEERSLEFLHEPQIVSKSI
GETVLFPCVVMGYPTASVRWMHKDQLIEERKSRFELLGGGSLQIFNLTKEDAGIYTCQAD
NVNASIEAQAELTVKAPPHFLKKPTNMYAHEATDVVFECEVSGSPAPTIKWVKNGDAVIP
SDYFKIIKEQNLQVLGLVRSDEGFYQCLAENDVGNVQSGAQLIILDPDVSIPTSPPTSLT
RSTTDHLMPGSGSSAGPTPSAPRDVVASLVSTRFIKLTWRLPAEPHGDDVTYSVYYGLEG
TNRERTVNTSRPGEMQVTIQNLMPGTKYSFRVVAHNTNGPGESSAPLRVDTQPEVQVPGP
APNLQAVVTSPSTVSLSWDVPLTGNGEIQNYKLYYMEKGVGIEQDVEVNALSYTMTGLKK
FIEYSFRVVAYNKHGPGVSTEDVSVRTYSDVPSAPPQNLSVEVLNSKSIMVRWNPPAADA
QNGDIIGYKIRYRKGGRKSEAAEITSGSQLSQLIEGLQRGTEYMVRVSAITVNGTGLATE
WMTSETFESDLDETKVPDMPSSLHVRPLVNSIVVSWTPPENQDIVVRGYIIGYGIGSPHA
QTIKVDYKQRYYTIENLNPSSHYVITLKAFNNVGEGIPVYESAITRPQSDPIDPDVDLYE
LFHAPYTPVPEPLPMLPPVGVQASVLSHDTIKVTWADNSLPKNQKITDARYYTVRWKTNI
PANTKFKVANTTTLSHTVTGLKPNTLYEFSVMVTKGRRTSTWSMTAHGTTFETIPSSAPK
DVTVVSKEGRPRTIIVNWQPPSEANGKITGYIIYYSTDVNAEVHDWVIEPVVGNRLTHQI
QELTLDTTYYFKIQARNSKGMGPMSEAAQFRTPKAESSDKMANDQAPGIVKPRPLTPDQG
FGSGGKPDMSGTGDNHILVIVIIVSVGAFTIILVVVGAFLCTRRSSTQQKKKRAACKSAN
GSHKYKSNSKDLKPPDLWIHHERLELKAVDKSPEPNPVMTDTPIPRTSQDITPVDTAMDP
MLQRRNSYRGHESEDSMSTLAGRRGIRPKMMMPFDAQPPQPVISAHPIHSLDNHHHHYHL
GSLASPTRSYLHHQSSPRSIATPISHLDRADSTESVRNTPNADLHPPSGQPSCATDLSET
DISYHSSAAEDDPMFTAPTAHVRPTHALKSFAVPAIPVHSMYDSSALPSTPLLSQTGPHS
VKTASIGTLGRTRTPMPVIVPSAPDVSDSSRHYEDSGSVSTSNYETDELTEEMAHLEGLM
KDLNAITTA
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcggctgctcgtcgcggttttctgcctcacgatcacgctttcacacgctgag
aaagggtcagcagtgagaaacttcagcccgttctggttctccactgagccgtcggacacg
ctagccgtgcggggagcgccggcgctactcaactgctcggtccacggcgagacccctgcc
aagatcgagtggaggaaagatggctcttttctcaacctggcgtcggatgagcgcaggcag
atcttggctgatggctctctcctcataacctccgtggttcattccaaacacaataaaccc
gacgagggggtttaccagtgtgtggccactatagacaccctgggcaccatcattagccat
acagccagactcagtgtagcgggaataccgcggtatctcagccagcctgaagcggcattg
gttcgggtgggtgacaatcaggtgctgagctgtgaggtaaatccagacctggtgtctttc
atccagtgggagagaaacaaagagctggtccagctggatgagagagtcttcgtcctgtcg
aacggagctctcgtcatcagtaatgccacagagacggatgcaggattatatcgctgtgtc
atagaaaacgctgggcccatcaagaccagcgaggaggccgaaatacagatactgcctgaa
acgggggaggagaggagtttggagttcctccacgaacctcagatcgtttctaaaagcata
ggcgagaccgtgctgttcccttgtgtggtgatgggatatcccacagcctccgtccgctgg
atgcataaagaccagctcattgaggagaggaagagccgctttgagctgcttggtggggga
agtctgcagatcttcaatttgacaaaggaagatgctggcatatacacttgccaggcggac
aacgtcaatgcatccattgaagcccaggctgagctcacagtgaaagctcccccacatttc
ctgaagaaacccaccaacatgtatgctcacgaagccacggacgtcgtgtttgaatgcgag
gtcagcggctcgcccgctcccaccatcaaatgggtgaagaatggagatgccgtcattccc
agtgactatttcaagatcatcaaggagcagaacctgcaggtgttgggactggtcagatca
gatgaaggtttctatcagtgtttagctgagaatgatgtaggaaacgtgcagtctggtgct
cagctcatcattttggatccagatgtgtccatccccacatcccctcccacctcactgacc
cgttccactactgaccatctaatgccaggctccggaagcagtgctggtcccactccctcc
gccccccgcgatgtcgtggcctccctggtctccacccgcttcatcaagctgacctggcgc
cttccggccgagccacatggagatgatgtcacctactctgtttactacggcttggagggc
actaacagggagaggaccgtcaacacgagtcgtccgggtgaaatgcaggtcaccattcag
aacctcatgccagggaccaagtacagcttcagggtggtggcccacaacacgaatggacct
ggagagagctcggcacctctgagggtcgacacccaacctgaggtccaggtgccaggacct
gctcccaacctgcaggcagtggtgacgtccccctctacagtgagcctcagctgggacgtg
cctctcacgggcaacggcgaaatccaaaactacaaactttactacatggagaagggcgtg
ggcattgaacaggatgtggaggtgaacgcgttatcctacaccatgactggactaaagaag
ttcatagagtacagttttagagtcgtggcttataacaaacatggccctggagtttctact
gaggatgtgtcagtacggacctactctgatgtccccagtgcccctccacagaacctgagc
gtggaggtgctcaactctaagagcatcatggtccgatggaacccgcctgcagcagatgct
cagaacggcgacattatcggctataagatccgttacaggaaaggagggagaaagagcgaa
gcggcggagataacttcaggatcacagctgtctcagcttatagaggggctgcagcgggga
acagaatacatggtgcgagtgtcggccattacagtgaatggcacaggtctggccacggaa
tggatgacctctgagacctttgagagcgatcttgacgagacaaaagtgccagatatgccc
agctccctccatgtgcggccgcttgtcaacagtattgtagtgagctggaccccaccagag
aatcaggacatcgtggtgaggggttacattatcggctatgggatcggcagccctcacgca
cagaccattaaagtggactacaaacagagatactacaccatcgagaacttaaatccaagc
tcacactatgtgatcacactgaaggccttcaacaacgtgggggagggcattcctgtgtat
gagagcgccatcacacgaccccaatcagaccccatagaccctgatgttgatttgtacgaa
cttttccatgctccatacactccagtaccagaacctttacccatgctgcctcccgtgggc
gttcaggcgtccgtcctgagccacgataccatcaaagtcacctgggcggacaactcgctg
cccaagaaccagaagatcacagatgcgcgctactacacggtgcgctggaagaccaacata
cctgctaacacaaagtttaaggtggctaacaccaccaccctgagccacacagtcacgggt
ctgaagcccaacaccttatatgagttctcagttatggtgactaagggcagacgaaccagc
acctggagtatgactgctcatggaactacttttgaaacaattccaagttctgcacctaaa
gatgtgactgtagtaagcaaagaaggacgaccgcgaaccatcatagtcaactggcagccg
ccttcagaagccaacggcaagatcacaggttacattatttactacagcactgatgtaaat
gcagaggttcacgattgggtcatcgagccggttgttggtaacagactgactcaccagatt
caggagctcacccttgataccacctactatttcaagatccaggctcgtaactctaaggga
atgggtcccatgtctgaagctgcacagttccgcactccaaaagccgaatcctctgacaaa
atggctaatgaccaagctcctgggatagtgaaaccaagacctctcacaccagaccaaggc
tttggatcaggaggaaaaccagatatgtctggcaccggtgataatcacatactggttatt
gtcatcatcgtgtctgtgggggcgttcaccatcattttggtggtggttggagcttttttg
tgtacacgtcgctcctccacacagcagaaaaagaaacgtgcggcctgcaagtctgcaaat
ggatcccacaaatacaagagcaattccaaagatctgaagccaccggacctctggattcac
cacgagcgcctggagctcaaagctgttgataaatcacccgaacccaaccccgtcatgacc
gacacgccaatcccccgaacttctcaagacatcaccccagtggacaccgcaatggatccc
atgctccagagacgcaactcctaccgcggccatgaatcagaggacagcatgtctaccctg
gcgggccgtcggggaataagacctaaaatgatgatgccctttgatgcacagccccctcag
cctgtgattagcgctcaccccatccattccctcgataaccatcaccatcattatcacttg
ggcagcctggcctcgccgacacgcagctatctacatcaccagagcagcccgcggtccatc
gccacccccatctctcatctagacagggccgattccacagaatcggtacggaacacgccc
aacgccgacctgcatcccccgtcgggccagccctcctgcgccactgatctctcagagaca
gacatcagctaccacagctcggctgcagaggacgatcccatgtttacagctcccaccgct
cacgttcggcccacacacgccctcaagagcttcgcagtgcctgccataccagttcactcc
atgtacgactcttcagcactgcccagcactccactgctgtctcagacagggccacactcc
gttaagacggcctctatcgggacgctgggaagaacgaggactcccatgcctgtcatagtt
ccaagcgctccagacgtgtcagacagcagcagacattatgaggattctgggagcgtgagt
acatctaactatgagacggacgagttaacagaggaaatggcccatctggagggtttaatg
aaggacctgaacgccatcacgacggcctga
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