Triplophysa rosa: 130554138
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Entry
130554138 CDS
T09216
Symbol
chd8
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 8 isoform X1
KO
K04494
chromodomain helicase DNA binding protein 8 [EC:5.6.2.-]
Organism
tros
Triplophysa rosa
Pathway
tros04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
130554138 (chd8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tros03036
]
130554138 (chd8)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130554138 (chd8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
Chromo_MIT1
HTH_Hrp3
Motif
Other DBs
NCBI-GeneID:
130554138
NCBI-ProteinID:
XP_057189567
LinkDB
All DBs
Position
LG5:1108574..1126039
Genome browser
AA seq
2551 aa
AA seq
DB search
MADHIMDLFDDTPLFNLDSLPEDAFSQGSSDPVEEALKLALGQVDPPGDLTSVPGVPMLG
DVVSVPLQTLQPQQPTQMSQDISVTQAPISIQAVPQSSLSVAGSSSGAATVLLSSPIGVP
VSCSQVTTQQLHTQQVAAVTQQAVGQSGHKIVILKGPQGQTQLLQGVTGATGSPGKVTLA
RVLTGTPLRPGMAVVSGGTMLNASPGQGQVRMSSGVQRLVQTANGPMKQVLLTSIPQSQV
QTQPVQVQIPAQAQLTQGQLQTQPAQVQVQVQQQAQVSLQMQAQAPAVTTPAAVRPQGVT
LSAMPQQGEAKRITLVLQQPSQGGAAQAGTLTVGGAVAAGSGLQGQHPRLVLGSLPGKLV
LQGSQLAALAQAKAGQTGAQPKVLTIQLQVQQQPNQQGAKFQLVSGAANAGGSPQVVQIS
QGQGGQRLAVPLKLLLQPQSSVVSSAGGTISVVKVINTSAAGSAAGTNTTAVCSGVRLAK
LQEPVRKVETLCKQEKANRIVAEAIARAKARGERNIPRVLNQDELPAGQTSADLDGAAGA
AGAKKKGGGGGGSKKKSPSAGGGKVVAGGDKKSKAKAPGTGGGFVGGSKSKSKTKLNTIT
LVGKKRKRNGSSDHSDVDLSPPVSPRTLEEDMSQKRRSNRQVKRKKYTEDLDIKITDDED
EMDADVDVTTPVVSTVSHAQAMGGELQQELDGDGLPSMQFFVENPSEEDAAIVDKILSMR
LTKKEVSPGHYVNVEEFFVKYKNYSYMHCEWASLEQLEKDKRIHQKLKRFKTKQAQMRNI
FQEDEEPFNPDYMEVDRILDESHSVDKDNGEPVVYYLVKWGSLPYEDATWELKEDVDEGK
VEEFRKIQSRQPRLKRTPRPPASSWKKLDESREYKNGNQLREYQLEGVNWLLFNWYNRQN
CILADEMGLGKTIQSLALLSEVFSAGVQGPFLIIAPLSTITNWEREFSTWTDMNAIVYHG
SLASRQMIQQYEMYCKDDKEHLIPGAYKFDALVTTFEMILSDCPELREISWRCVVIDEAH
RLKNRNCKLLDSLKMLEVEHKVLLTGTPLQNTVEELFSLLHFLEPAQFPSEIEFLREFGD
LKTEEQVQKLQSILKPMMLRRLKEDVEKNLAPKQETIIEVELTDVQKKYYRAILERNFSF
LSMGATHNSNVPNLLNTMMELRKCCNHPYLITGAEEKIVAELREVYDPLAADFHLQALVR
SAGKLVLLDKLLPRLKAGGHKVLIFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQA
AIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCVIFDSDWNPQNDLQAQARCHRIGQSK
AVKVYRLITRNSYEREMLDKASLKLGLDRAVLQSMSGNKDSNVNGIQQFSKKEIEDLLRK
GAYAAIMDENDEGSRFCEEDIDQILQRRATTITIESEGKGSTFSKASFVASENRTDIALD
DPEFWQKWARKADIDMDSLNRKNTLVIDTPRVRKQTRQFSTLRGEGGELSDLDSDDDYPP
HNSRQSRASRRSDRHSGAGYGRTDCFRVEKHLLVYGWGRWRDILSHARCKRRLSERDVET
ICRVILVFCLIHYRGDENIKSFIWELITPSENGREPQSLLNHSGLSIPVPRGRKGKRVKA
QSSFDVQKVEWIRKYNPDSLLLDDSYRKHLKHQCNKVLLRVRMLYYLKQEVIGDHADSVL
SGADARDIDIWLPEMEQQDVPSGWWDSEADRCLLIGVYKHGYEMYTTMRADPCLCFVERC
GRPNEQDINAEQQAADPELGDGGDYDKYSEDPEFKPAARHTKEAYEEPDSGNADNEICVE
ERSAPVLAEGPSSASSDLCYWPTSSSLTARLRRLITAYQRSYRREQLKMEAAEKGDRRRR
RCEQATKLKEIARQERQQRCVNFRWTRREECDFYRVVSTFGVDRIKKEADALEGDEHHMD
WTRFRSFARLDKKTDESLTRYFKCFMSMCRKVCHLRPARGEESQEMSQSLAPITEERASR
TLYRVSLLCRLRERVLTHPLLEERFALAPPSAELPNWWNVPQHDHELLLAASRHGVSRTE
LSIFSDPQYSFSQARLDYLHNQQAQAASQTVAFSQSQEQTSIKEEGLDNDSRLLGVDTLC
QSDSPVTPFAHSEGKVGGQAGWSWKKSKHAGSSGRKGERGEGASDSDSDSDSGSSSSSRH
SGSSSDSGDSDAEREQAALKMCDGDEENSILSLTPSQDGAPQESLTDPLRVDWPKDRVLI
NRIDNLCSLVLTGHWPAGRRYVPDVHLSAASEEHGLVDDLGYPRVARKSNSAMSAESGEG
QDTEFTVKLLKEEGLKLTFSKQALMPNGEDSGRKKRKDHELVDSEGVLHAPRRRDLPNWL
KENPDYEVEGDMLELMVNRTKRKRRRRKVEKGAALTGSERVKVKDLRTGKKFGGIYGPAL
QDLREHLEENPDHAVTAEWSETVRNSGFLPESLFHRLLSPHASIPKKSRHYLSTPSIQSD
DPLLGGGEGETLVSDGAYMMDEEDLEDSGHLASSHHFLTPAYDVKMEPSALDMDGGDSLS
QGGYESSDREAILDDVIMAPKNSDSSSSSED
NT seq
7656 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccatattatggaccttttcgatgacacaccactgttcaatttggattccctg
ccggaggatgcgttttcccaaggctcctcagacccggttgaggaggcactgaagttggcc
ctcggccaagtcgacccacctggagatctcacgtcggttcccggcgtccctatgctcggc
gatgttgtctctgtcccgcttcaaactcttcaacctcagcagcccacccagatgtcccag
gacatctccgtcacccaagctccaatatccattcaggcggtgcctcagtcttctctctct
gttgccgggagcagcagcggggcagcaaccgttctcctgagctccccgattggcgtaccc
gtgtcatgctctcaggtcaccacccagcagcttcacactcagcaggtcgccgctgttacg
cagcaggcggtggggcagtcgggccacaaaattgtcattctgaagggccctcagggtcag
actcaattgctgcagggtgtgacaggagccacgggctctccagggaaagtcaccctcgcc
agagttctaacaggaacccctcttagacccggaatggcggttgtttccggtgggacgatg
ttaaatgcgtctcctgggcaggggcaggtcaggatgagctctggggtccaaaggctggtt
cagactgcaaatggcccaatgaagcaggtcttgttgacctccataccccagtcacaggtg
cagacgcaacccgtgcaggtgcagatacccgcgcaggcgcaattgacacagggtcagctg
cagacgcagcctgcgcaggttcaggtccaggtgcagcagcaagcgcaggtgtcgctacag
atgcaagcccaggctccagctgttacaacccctgcagctgtccgacctcaaggagtcact
ctctcagcgatgccacagcagggggaagctaagaggatcactctggtgctacagcagccc
tcgcaaggcggagctgcccaggctgggacattgacggtagggggagctgtggctgcaggg
tcaggtctgcaaggccagcatcccaggctggtgttgggctctctgccaggcaaattggtc
ttgcagggaagccagctggcggctctcgcccaagccaaagcaggtcaaacgggggcacag
ccgaaggtgctcactattcagctgcaggttcaacagcagcccaaccaacagggagccaag
ttccagttggtttctggggcagctaatgctggtggcagccctcaggtggtgcagatttct
caaggacagggaggacaaagactggcggtgcctcttaaactactgctgcagccacagtcc
agcgtggtgtccagtgccggtggtaccatttccgtggtgaaagtcatcaatacatcggcc
gccggctctgcagccggcacaaacactacagctgtgtgttccggtgtgcgtctggctaag
ctacaggaacccgtgcgaaaagtggaaaccctgtgcaagcaggagaaggccaatcgcatc
gtcgccgaggccatcgcgcgggccaaagccaggggtgagaggaacatcccccgcgtcctc
aaccaggatgagcttcctgctggacagacctcggcggatctggatggtgccgcgggggct
gccggggccaaaaagaaaggaggaggtggcggagggagcaagaagaaaagcccaagcgcg
ggaggaggaaaagtggtggcgggtggagacaagaaatctaaggcgaaggctccgggaact
ggaggagggtttgttggcggcagtaaaagtaaatccaagactaagctaaacaccatcacg
ctagtgggtaagaaaagaaaaagaaatggatcctctgaccactcagatgtagatcttagc
ccacccgtctcaccccgtacgctggaggaagacatgtcgcagaagcggcgctccaaccgc
caggtgaagaggaagaagtacacagaagatttggacatcaaaatcacagacgatgaggac
gaaatggatgcggacgttgacgtgaccactcctgttgtgtctactgtaagccacgctcag
gccatgggaggagaactccaacaggagctcgatggagacggtcttccaagcatgcagttt
tttgtggagaacccaagtgaggaggatgctgctattgtggataaaatattgtccatgagg
ctgaccaaaaaagaggtttctcctgggcattatgtcaatgtggaagaattctttgtcaaa
tacaaaaactactcgtacatgcactgtgaatgggccagtcttgagcagctggagaaagac
aagaggatccatcagaagctcaagagattcaagaccaaacaggcacagatgaggaatatc
ttccaagaggatgaggaacccttcaatccagactacatggaggtcgatcgtatcttggat
gaatcgcacagtgttgataaggacaatggggagccggttgtgtactacctggtgaagtgg
ggctcactgccctatgaagatgctacttgggagctgaaggaagatgttgatgaaggaaaa
gtggaagaattcaggaagattcaaagtcggcagccccgtctcaagagaacccctcgacct
cctgctagttcctggaagaagctggatgagtcgagggagtataaaaatgggaatcagctt
cgagagtaccagctggaaggagtcaactggctgctcttcaactggtacaacaggcaaaac
tgcattctggccgacgagatgggtctcggtaagaccattcagtccctggcgctgctgtcc
gaggtgttttctgcaggggttcaggggccgttcctcatcatcgcaccgctgtccaccatc
acaaactgggaaagagagttctccacctggaccgatatgaatgctattgtttatcacggc
agtctggccagcagacagatgatccagcagtatgagatgtactgcaaagatgacaaggaa
catttaattccaggtgcttataagtttgatgctctcgtcacaacttttgagatgattctg
tccgactgccccgagctaagagagatttcttggcgctgtgtggtaattgatgaagctcac
cgactgaagaatagaaattgcaaactcctggacagccttaagatgcttgaagtagagcat
aaagtgttgctgacaggcactccactgcaaaacacagtagaggaactattcagtcttctg
cacttcctggaaccagctcagtttccctccgaaatcgagtttctccgtgagtttggagat
ctgaagacagaggaacaggtccagaaactgcagtctatcctgaagcccatgatgctgcgt
aggttgaaggaggacgtggaaaagaacctcgccccgaaacaagagaccattatagaggtg
gagttgactgacgttcagaagaagtattaccgtgctattctagagcgtaactttagcttc
ctcagcatgggagccacacataacagcaacgtgcccaatctcctcaacaccatgatggag
ctgcgaaagtgttgcaaccatccttacctcattacaggagctgaggagaagatagtggct
gagctgagggaagtgtatgatcctctggctgcagacttccatcttcaggctctggtgcgc
tccgctgggaaactggtcttgctggataagctgcttccacgcctcaaagctggaggacac
aaggtgctcatcttctcccagatggtgcgctgcctcgacatccttgaggactacctcata
cacaagagatacctgtatgagcgcatcgatgggcgcgtcagagggaacctgcgacaggcg
gccattgatcgctttagtaaaccggattcagaccggtttgtcttcctgctttgtactcgt
gccggagggttgggcattaatcttacagctgctgacacctgtgtcatattcgactcggac
tggaacccacagaatgatcttcaggctcaggcccgctgtcaccgaatcggtcagtctaaa
gcagtgaaggtgtatcgtctgatcaccagaaactcttacgagagggaaatgttagataaa
gccagtcttaaactgggacttgatcgagccgtcctgcaaagcatgagcgggaacaaggac
agtaatgttaatgggatacaacagttttccaagaaagagattgaggatttacttcgtaaa
ggtgcttatgcagccataatggacgagaacgatgaaggcagtcgcttctgtgaggaggac
atcgatcagatccttcagagaagggcgactaccatcacaatagagagcgaaggaaaagga
tccaccttctccaaagccagttttgtggcgtctgagaaccgcacggatattgctctggat
gaccctgagttttggcagaaatgggccaggaaagcagatatagacatggattctctcaac
aggaagaatactcttgtgatcgacacgccaagagtgagaaagcagacacgtcagttttcc
actctgcgtggagagggtggtgagctgtcggatttggacagtgatgacgactacccaccc
cataactctcggcaatcccgggcttcccgacggtcagaccggcattccggcgcaggctac
ggacgcacagactgcttccgagtggagaaacaccttcttgtttatgggtgggggcgctgg
agagatatcctgtctcatgctcggtgtaagcggcgtctcagcgagcgagacgtggagacc
atctgccgtgtgatcctggttttctgtctgatacattatcggggagatgagaacatcaag
agcttcatctgggagttgatcaccccgtcagagaatggacgagaacctcaatctctgctt
aaccattctggtctgtccatcccggtccctcgtggcagaaagggcaagcgggtgaaggct
cagagctcttttgatgtgcagaaggtagagtggattcgcaagtacaatcctgacagtcta
cttctggacgacagttatcgcaagcacctcaagcaccagtgcaacaaagtgttgctgaga
gtacgtatgctttattacctgaagcaggaggtcatcggagaccacgctgattctgtattg
agtggagctgatgccagagatattgatatctggttgcctgaaatggagcagcaggatgtt
ccgtctggttggtgggactcagaagccgaccgatgcttgcttatcggtgtttataagcat
ggatatgagatgtacaccaccatgcgtgctgacccctgcttgtgttttgttgagcgatgt
ggacgcccgaatgagcaggacatcaacgcggagcagcaagcggcggacccagagctcggg
gacggaggggactatgacaagtactccgaggatccagagttcaaacctgcagcgagacac
accaaggaagcatacgaggagcctgattccgggaacgcagacaatgagatttgcgtcgag
gaacgctctgcccctgtgctggccgaaggcccttcctctgcatcctcagatttgtgttat
tggccaacgagttcatcgctcacagctcgactgcgacgcctcatcacagcatatcagcgc
agttacagacgggagcaacttaagatggaggctgcggagaagggcgatcgaagacgtaga
cgctgtgaacaggccactaagctcaaagagatagcgaggcaagaacgtcagcaaaggtgt
gtcaatttcaggtggacccgtagggaggagtgtgatttttacagggtggtatcaaccttt
ggtgtggacaggataaagaaggaggccgatgctctggaaggggacgagcatcacatggac
tggacccgcttccgctctttcgctcgactggataagaaaactgatgagagcttgacacgg
tacttcaagtgcttcatgtccatgtgtcggaaagtgtgtcaccttcggccggcacgtgga
gaagaatctcaagagatgtctcagtccctggcccccatcacagaagagcgagcctcgcgg
acactctaccgagtcagcttgctgtgccggctacgcgagcgcgttctcactcacccattg
ctggaggaacggttcgctctggcgccacccagcgctgaactccccaactggtggaacgtc
ccacagcacgaccacgagctgctcttagctgcctccagacacggcgtcagccgaaccgaa
ctctccatcttctctgacccccagtactcgttcagccaggcccgcctcgactacctccac
aaccagcaagcccaagcggcttcacagactgtggcattcagccaatcacaagagcagacc
agtatcaaagaggaggggctagacaatgactctcggctgttgggggtggacactctgtgt
cagtcggactccccggtcacgccgttcgcgcactccgaagggaaagttggggggcaagct
ggctggagctggaaaaagagtaaacacgctgggtccagtgggagaaaaggagaaagaggt
gaaggggcttcagactcagattctgattcggactcgggctcgtcgtcttcctcgcgtcat
tctggtagctcgagtgatagcggagacagtgatgctgagagagaacaagcagctcttaag
atgtgtgatggtgatgaagagaacagcatcctctcactgacaccatcccaagacggtgct
ccacaggagtctcttaccgaccctctccgagtcgactggcccaaggatcgcgtgttgatt
aacagaatagataacctctgttctctcgttctaacggggcactggccggcgggccgccgt
tacgtccctgacgttcacctcagtgcagcgtctgaagagcacggccttgtagatgacctg
ggttacccacgggtggcacgcaagagcaacagtgccatgtctgcggaatctggtgaaggc
caagacacagagttcaccgtaaaactcctgaaggaggagggtctgaagctgaccttctct
aaacaagctctaatgccgaatggggaagacagcggacgcaagaaacgaaaggaccacgag
ctggtagattcagagggagttctccatgctcctcgaagaagggaccttccaaactggctc
aaggagaatccagactatgaggtggagggagacatgttagagctgatggtgaacaggacc
aaaaggaagaggaggaggaggaaggtggaaaaaggagcagcacttacaggaagtgagaga
gtgaaagtcaaagacctgaggacgggcaagaagttcggtggaatatatggccctgcacta
caggacctgagggagcacctggaggagaatcctgaccatgctgtaacagcagaatggtcc
gaaactgttcgcaactcgggcttcttgccagagagtttattccacagactgttgagtcct
catgcttcaatccccaaaaagagccgacattacctctccaccccttcaatccagtccgac
gaccctctcctgggaggcggcgaaggcgagacgttagtttccgatggggcgtacatgatg
gatgaagaggacctggaagacagcggtcacctcgcatcatctcaccacttcctcacccct
gcctacgatgtgaaaatggagccaagcgcgctcgacatggacggcggcgacagtttgtcg
cagggtggctacgaaagctcagacagagaggccattttggatgatgtcatcatggcacct
aaaaattcagactcttcctcgagttcagaggattga
DBGET
integrated database retrieval system
