Triplophysa rosa: 130554320
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Entry
130554320 CDS
T09216
Symbol
rc3h1b
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tros03000
]
130554320 (rc3h1b)
04121 Ubiquitin system [BR:
tros04121
]
130554320 (rc3h1b)
Transcription factors [BR:
tros03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130554320 (rc3h1b)
Ubiquitin system [BR:
tros04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130554320 (rc3h1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-CCCH
zf-CCCH_4
zf-CCCH_UNK
zf_CCCH_4
NS3_helicase_C
DUF2570
Motif
Other DBs
NCBI-GeneID:
130554320
NCBI-ProteinID:
XP_057189858
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Position
LG5:15813458..15828507
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AA seq
984 aa
AA seq
DB search
MLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAV
RARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQ
LLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAPDQWSSLL
YGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELLANIDPSP
DAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADTQQLPQHSKYKTYMCRDMKQKGG
CPRGASCTFAHSQEELEKYRKMNKRLAARVSCTPGLLPEEVVPLEPGRKPSTLTNGIAGP
GTHLPQLIPRGTDPSTYEILLKTKMDGISLSAPGSPPDSLDKSGMALIPHSVPHPRAEHL
PMSKQVPVMPRGAPQMYPQQPELFYPEPARPPPSGSQYDAQYPAGNPYPYQPPQYVSPRY
IRNPPPPGESTVSPYPEPYPGYGQERQYQNHHSGPPFSAHPYAPPSHYSRRHGHYPAPPP
PFAPPRDDLVRMSPIPLDVPPAPMPPPPAGATGSLYHPQESSPRDRYPPDGYYPAGSHPS
QMRSHLRDPYSRSQPSLDDLHRRRKELLVQLEERKVISPPPFAASPTLPTHPFPNDYPQE
YLEDGSKVFGSREPDYAGQYSPWSCDTIGSYIGSKDAKPKDITSTVEMMNAEGKVLREPP
LDTQRRSAEAKDDDPIIPFGPLPTVSPFGAISRTSKTGYQTTGPVQAMASSQASGSKHLT
MTADYSYGNHSSWGRASYSQHQSMNTQGHFSERLPVSASDREQLKIELQQVNQQISQQTR
GMEAASNSMLLQREACALAAQPAPAVKWSTAAAVSSEQLSLELHHVEREIGKRTREIALE
NQVAHEYKLKATENGQPDHKAQLEELSLALGEVSNGSSGMKPASSVGGSMLSLTNKTSSL
TLCSADQSASSSDLQKNGVVHSCS
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgctaagccgccccatgcagagaaagctggtgaccctggtgcactgtcaactggtggaa
gaagaaggcagggtcagggccatgcgggcggcccgttctctgggtgaaaggactgttaca
gagctcatcctgcagcatcaaaatccccagcagctctcctccaacctgtgggctgctgtc
agagccagaggctgccagttcctgggcccagccatgcaagaggaggcactaaagctggtg
ctgttggccttggaagatggatctgctctttccaggaaggttctggttctctttgtagtc
cagagacttgaacccaggtttcctcaggcctccaaaaccagtattggacatgtagtccag
ctcctctaccgtgcctcctgcttcaaggtgacgaagcgagatgaggactcatcgctaatg
cagttgaaagaggaattccgcacgtatgaggcacttcggcgggaacacgactctcagatt
gtgcaaattgccatggagggaggcttacgcatcgcccccgatcagtggtcctctttactc
tatggagaccagtcccacaagtcccacatgcaatccattattgacaagttgcagacgcca
gcgtcatttgctcagagcgttcaggagttgaccatcgcactgcagaggacgggtgacccc
gccaacctcaaccggctaagacctcacctggagctgcttgcaaacatcgaccccagtcca
gacgctcctcctcccacctgggagcagttggagaaagggttggtggcggtaaagactgta
gtgcacggcctggtggacttcattcagaaccacagtaagaagggtgctgacacgcagcag
ctgccccagcacagcaagtacaagacatacatgtgcagagacatgaagcagaaaggaggc
tgtcccagaggagccagctgcaccttcgcccattctcaggaggagctggaaaagtaccgt
aaaatgaacaaacgtcttgctgcacgggtgtcctgcactcctggtctgctgcctgaagaa
gtggttccattggaacctggacggaagccctcaacccttaccaatggtattgctggtcct
gggacccatcttccccagctcatccccagaggcacagatccctccacttacgaaatttta
ctaaaaaccaagatggatggcattagtctaagtgctcctggatctccacctgactctctt
gataaatctggcatggccctaataccgcactctgtgcctcaccccagggcagagcactta
cccatgtccaagcaggtgccagtcatgcccagaggtgctccacagatgtatcctcaacaa
cctgagctcttctacccagagccagccagacctccaccctcaggatctcagtatgatgct
caatacccagcaggcaacccctacccataccaacctccacagtatgtatctccccgttac
atccgcaacccacctccgcctggagagtctacagtgtccccttacccagagccctaccca
ggttacggccaagagcgccaatatcagaaccaccactctggtcctcctttctcagcccac
ccctacgcacccccctcccattacagccgcagacatggacattatcccgcacccccacct
ccattcgcccctcccagagatgacttggtgaggatgagccccattcctttagacgttcct
ccagcccctatgcctccacctcccgcaggggccacagggtctctgtaccacccccaggag
tcttcaccccgagataggtacccaccagatgggtactatcctgctggatcacaccccagc
cagatgagatcccacttgagagacccgtacagtcgttctcagcctagtctggacgacttg
caccgtaggcgtaaggagctgctggtccagctggaggaaagaaaagtaatctctcctcct
ccctttgctgcctcccccactctccccacacaccctttccccaatgactaccctcaggag
tatttggaagatggctcaaaagtctttggaagtcgggagccagactacgctggacagtat
tccccctggtcatgtgatacaataggatcatacattggctccaaggatgctaaaccaaaa
gatatcactagcactgtggagatgatgaacgcagagggaaaagttctgcgcgagcctccg
ctggacacccagcgacgctctgccgaagccaaagacgatgatccaatcattccctttggc
cctctgcccacagtgtctccctttggtgccatttcacgcacatcgaaaacgggttaccag
accactgggccggtacaggccatggcttcctcacaggcctcaggctcgaaacacctgaca
atgacagcagactattcgtatggaaaccacagcagctggggcagagcttcgtactctcag
caccagagcatgaacactcagggacatttcagcgagcgtctgcccgtgtccgcctctgac
cgcgagcagctcaagatcgagctccagcaagtcaaccagcagatcagtcagcagacccgg
ggcatggaggctgccagtaactccatgctcctgcagagggaggcgtgcgcgctggcggct
cagcccgcgccagcagtgaaatggtctacagctgcagctgtatccagtgaacagctcagc
ctggagctgcatcacgttgagcgagagatcggaaagagaacccgtgaaattgccttggag
aaccaggtggctcatgaatacaaactgaaggccacagagaacgggcagcctgaccataaa
gcccagctggaggaactctccttagcgctgggtgaggtgtctaatggatccagtggcatg
aagccagccagtagcgtgggtggatctatgctgtcgctgaccaataagacgtcttctctc
accctctgctctgctgaccaatcagcaagtagctcagaccttcaaaagaatggtgtcgtt
cactcttgctcttaa
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