Triplophysa rosa: 130554605
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Entry
130554605 CDS
T09216
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
tros
Triplophysa rosa
Pathway
tros03008
Ribosome biogenesis in eukaryotes
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
130554605 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
130554605 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130554605 (xrn1)
03009 Ribosome biogenesis [BR:
tros03009
]
130554605 (xrn1)
03016 Transfer RNA biogenesis [BR:
tros03016
]
130554605 (xrn1)
03036 Chromosome and associated proteins [BR:
tros03036
]
130554605 (xrn1)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130554605 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
130554605 (xrn1)
Ribosome biogenesis [BR:
tros03009
]
Eukaryotic type
Pre-60S particles
RNases
130554605 (xrn1)
Transfer RNA biogenesis [BR:
tros03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
130554605 (xrn1)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130554605 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Motif
Other DBs
NCBI-GeneID:
130554605
NCBI-ProteinID:
XP_057190356
LinkDB
All DBs
Position
LG5:12343603..12361626
Genome browser
AA seq
1693 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKLSTDKSWQGVNVYLSGHETPGEGEHK
IMEFIRSESAKPSHNPNTRHCLYGLDADLIMLGLTSHEPNFSLLREEVRFGGKNSQKRIT
APEETTFHLLHLSLMREYIDYEFSELRKKITFEYDLERIIDDWVLMGFLVGNDFIPHLPH
LHINHDALPLLYRTYINVLPSLGGYLNENGHLNLGRFEKYMEKLSDFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEADAKVLKKSKSSDASLCLAALDGAKGTHTPGREGTEEDG
EDDDMFETEFRQYKRTYYMTKIGVDVVSDEFLANQAKCYVEGIQWILHYYYHGVQSWSWY
YPYHYAPFLSDVRNISSLKLTFDLAKPFMPFEQLLGVLPAASKELLPQCYQHLMTSLSSP
IVEYYPQDFKTDLNGKQQEWEAVVLIPFIDEKCLLAAMEPYMLKLTPSEKARNRHTECAV
YCFDKELDYTYDSPLPQMLPNIVHCHVRQTPIPMDAWHVSVEHVGCRIDRGALYFCGFPT
LQHIRHKFYKKKSGVMVFQQSSRGENTILEILPGQEVEQVEDVAALVLGKSLFVNWPHLM
EARVVAVSDGETKFALEEPSGSQLLYVDDTPPPTKVTHLTDKEQKEWIKEVQGLSEYFSK
RKGIVISETDLVIYAQLLIGRKYVIGQNAKVHLEKQFAKQVLPFPHQTIVKDIKAFDSSL
ARFKTLEELFTPGTSVFMVGNPYYGAMGDVQDSSDVINEGRVRVVFTVPCEPQLDALIQN
QHKYSVKYSPGYVLASRLGITSYLVSRFSGSIFIGRGSKKNPHGEQKVNAGLNLKFNKKN
EEVPGYTKRTEKEWLYSAAVEELLAEYLERFSEVLDFVARNSYDDIFYEDDIWPGEDENG
AEKVQEIQAWLKAHPVSSSSRASCDLQILDAGIVEKIEEELERTKVKKMNKKVRVTVKPH
LLFRPLVQQHGVVPDPDAEYHLFDRVVNVRESFSVPLGLRGTITGIKGAERETEVLYEVL
FDEDFAGGLTIRCSPGRGYRLPPSALINLSHGSRKEHKLTAIVKPQPSSSHPTHKSHLGG
LNHSPRSPFIPTQQQNGRQGLNLRADTQGNRNSPHKTLNQKNQHKGSGNEKEFSNVWQSL
QGTGMPQKPPAHWQNNAGKSSGLVSQQRQSEGQKPNQYIDPFNKPGAGGNIRLLKRNEDL
NSTHLQGPSNKVSAEFEELIANLKISKDPEPAQHYPHQEPKSQSGEPLSPQSFAMKGTLM
LKEMLKIDSSGTSSSAPESTLLSEGQNSSNPSIQQLNKRRSSKKLAACINTPQTETPPPP
PLAGQPPILPSMAAELGHVCMGLGMGPPEFAFLRHRQNLMVCQVKLSNGLLVHGPQCQSE
TEAKEKTALFALQRLNSLGSFPLPPPIFPGVQQMRPLAPHPSIFGQPPGGLLMPPQGYGP
LHWGMQLPHQGHPFFGGTFPGAQVPPPSAASGSHNQFVPLQVTKKRVSGRTKYQDAKQLS
SFQAQSSGPSQPASSSPSAPKTPPPGTDKPKEKPTATTPKTPRQSANPHTPGSASKRKHR
KLAVNFEAAKVTD
NT seq
5082 nt
NT seq
+upstream
nt +downstream
nt
atgggagtgcccaaattttaccgatggatatcagagcggtatccgtgtctgagtgaagtg
gtcaaagagcatcagatcccagagtttgacaacctttatttagatatgaacggtatcatc
catcaatgttcccaccctaatgatgaggacgttcacttccgtatttctgaggagaagata
tttgctgacatttttcactacctggaagtgctctttcgcattattaagcccaggaaagtg
ttcttcatggcggtcgatggagttgcacccagggccaagatgaaccagcagcgtggacga
agattcaggtcagcaaaagaggccgaggagaaaattaaaaaggctttggagaagggtgaa
gttttacccacagaggccagatttgattctaactgcatcactcctggaacggatttcatg
gccaggctacaggagcagcttaaatattttgttcacaataaactgtccacagataaatca
tggcaaggagtgaatgtatatttgtctggtcatgagacacctggtgaaggagagcacaaa
atcatggagttcattcgttctgagagtgccaaaccgagtcataatccaaacacgaggcac
tgcctttacggcctggacgctgacctgattatgcttggcttgaccagccacgagcctaac
ttttctctcctcagagaggaggtgcgcttcgggggcaagaattcacaaaagaggataaca
gcccccgaggagaccacctttcacctgctccatctctcccttatgagggaatacattgac
tatgagttctcagagcttaggaaaaagatcacttttgagtatgacctggagcggatcata
gacgattgggtcctaatgggtttcctggtgggaaatgacttcattcctcatcttcctcac
ctgcacattaaccatgatgctctgcctttgctctaccgaacttatatcaacgtgctgccc
tctctaggcggctacctgaatgaaaatggtcacctcaacctcggccgttttgagaagtat
atggagaagctctcagattttgaccgagagcacttcagtgaagtgtttgttgatctgaag
tggtttgagagtaaggtggggaacaaatacctgaacgaggcagctgggctagcggctgag
gaggctgatgccaaagttttaaagaagagcaaatcttcagatgcctccctgtgtcttgct
gctcttgatggagctaagggcacacacactccaggaagagaaggcacagaagaggacggt
gaggatgacgacatgtttgaaacggagtttcgccagtataagcgcacttactacatgacc
aagataggcgttgatgtcgtctcagatgagtttttagccaatcaggctaaatgttatgtg
gaaggtatccaatggatcctccattattattaccatggagttcagtcatggagctggtat
tatccgtaccactatgcccctttcctctctgatgtgagaaacatctctagcctcaagttg
acctttgacctggccaaacccttcatgccttttgaacagcttttgggcgtcctgcctgca
gctagcaaagagctacttccacagtgttaccagcacctaatgacatcattgagctcgccc
attgttgagtattacccacaggacttcaaaacggacctgaacggcaagcagcaggagtgg
gaggccgtggtgctcatcccatttatcgatgagaaatgcttgttagcagcaatggagcct
tacatgcttaaactgaccccatcagagaaggccaggaacagacatactgaatgtgctgtg
tactgctttgataaagaactggactatacctacgactctcctctcccccaaatgttaccc
aatatcgtccactgccatgtcagacaaacgccaatcccgatggatgcatggcatgtgtct
gtggaacacgtgggctgcaggattgacagaggagcgctttacttctgtggcttccccacc
ttacagcacatccgccataaattttataagaagaaaagtggggtgatggtgtttcagcaa
agcagcagaggagaaaacacgatactggaaattttgccaggccaggaggtggagcaagta
gaagatgttgcagctttggttctgggaaagtctttgtttgtgaactggcctcatctgatg
gaagctcgagttgtagcagtttcggatggagaaactaagtttgctttagaagaaccgtca
ggatcacagttgctgtatgtggatgacactccaccccctactaaagtgacccatctgacc
gataaagagcagaaagagtggattaaagaagtgcaaggcctgtccgaatactttagcaag
cgtaagggcattgtgatcagtgagacagatctggtgatatatgcccagctcctgatcggc
agaaagtatgtcattggtcaaaatgcaaaggtccatttggagaagcagtttgccaaacaa
gtcctgccctttccacaccagaccatagtgaaggatatcaaagcctttgactcctcattg
gcgcgctttaagacattagaggagctgtttacaccaggaacttctgtctttatggttgga
aacccatattatggtgcaatgggggatgtgcaagattctagtgatgtcatcaatgaggga
cgagtccgagtggttttcactgtaccgtgtgaacctcagcttgatgccttaatacagaac
cagcataaatactctgtgaagtatagtcctgggtatgtgctcgcctcccgccttggaatc
acaagctacctcgtctcaaggttctccggtagcatctttatcggaagaggatccaagaaa
aatcctcatggagagcagaaagttaatgcgggcctcaatctcaagttcaacaagaagaat
gaggaagttcctggttacaccaaaagaacagagaaagagtggctttactctgctgctgta
gaagaacttttagctgaatacctagaaagattttcagaggtgcttgactttgtagcgaga
aacagttatgatgacatcttttatgaagatgatatctggccaggagaagatgagaatggg
gctgagaaggtccaggagatccaggcctggttaaaagctcacccagtgagctcttcatct
cgagcatcatgtgacctgcagatcctggacgctggcattgtggagaaaattgaggaagaa
ctggagagaacaaaggtcaagaagatgaacaagaaagtgagagtgacagtcaagccccac
ctgctcttcaggcctctagtgcagcaacacggtgtcgttcctgatcctgatgcagaatat
cacctatttgatcgcgtggtcaatgtgagagagagtttctccgttcctcttggacttcga
gggactatcactggtatcaaaggagctgaacgagagactgaagttctgtacgaggtgctg
tttgatgaggattttgctggaggactcactatcaggtgctctcctgggcgtggctatcgt
ttgccccccagtgccttaataaacctgagccatggcagcaggaaggagcacaaactcact
gccatcgtcaaaccccagccctcctcatcccatcccacccacaaaagccacctgggcggc
cttaaccactcgccacgttcaccgtttatccctacacagcagcagaatggccgacaaggt
ctcaatctcagggctgacactcagggcaacagaaactcgcctcataaaaccctcaaccag
aaaaaccaacacaagggctctggaaatgagaaggagttcagtaatgtatggcagtctctg
cagggtacaggaatgccccagaaaccaccggctcactggcaaaacaatgctgggaaaagc
agtggcttagtatcacaacaacgacaatcagagggacagaaaccgaaccaatacattgac
ccattcaacaaacctggcgcaggtggaaatattagacttctaaaaagaaatgaagatctg
aattctactcacttacaaggaccttcaaataaggtatctgctgaatttgaggagcttata
gccaatctgaagatttcaaaggaccctgagccagctcagcactatccgcatcaagagccc
aagagccaatcaggagagcctctgtctcctcagtcgtttgctatgaaggggacacttatg
ttgaaagaaatgttgaagatcgacagctctggaacaagttcttctgcccctgagtctact
ttgctttctgaaggccagaattcatcaaaccccagcatccaacagctaaacaagagacgg
tccagcaaaaagctagctgcttgtataaacacacctcagactgaaaccccacctcctcct
cctctggctggccagccccctatactgcccagcatggctgctgagctcggccacgtatgc
atggggcttggcatgggacctccagagttcgcctttctccgccatagacagaatctgatg
gtgtgtcaagtgaagctgtctaatggtctactggtccatggtcctcagtgtcagtctgaa
actgaagccaaagagaaaacggctctctttgccctccaacgcttgaactcgttgggttca
ttcccacttccacctcccatattccctggagtacagcagatgaggcctcttgcacctcat
ccctctatcttcggccagccaccaggtggtcttttgatgcccccacaagggtatggaccc
ctccactggggtatgcaacttccccaccaggggcatccattctttgggggtactttccct
ggtgcacaggtccctccaccctcagcagccagcggatcccacaaccagtttgttcccctc
caggtgactaagaagcgggtttcagggcgaaccaagtaccaagatgcaaagcagttgtcc
tctttccaggcccagagcagtggaccttcccaaccagcttcttcttccccctcagctccc
aaaactcccccgcccggtaccgacaagcctaaagagaagcccactgccaccacacccaaa
acacccaggcaaagtgccaaccctcacacgcccggctctgcatccaagcggaaacacagg
aagctggcagtcaactttgaggctgctaaagtgacggactga
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integrated database retrieval system
