Triplophysa rosa: 130554642
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Entry
130554642 CDS
T09216
Symbol
shhb
Name
(RefSeq) tiggy-winkle hedgehog protein
KO
K11988
sonic hedgehog
Organism
tros
Triplophysa rosa
Pathway
tros04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
130554642 (shhb)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tros01002
]
130554642 (shhb)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130554642 (shhb)
Peptidases and inhibitors [BR:
tros01002
]
Cysteine peptidases
Family C46: hedgehog family
130554642 (shhb)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Morphogens
130554642 (shhb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HH_signal
Hint
Hom_end_hint
Hint_2
Peptidase_M15_3
Vint
PT-HINT
HtaA
Ribosomal_S6e
DUF7467
Motif
Other DBs
NCBI-GeneID:
130554642
NCBI-ProteinID:
XP_057190408
LinkDB
All DBs
Position
LG5:6880796..6884481
Genome browser
AA seq
416 aa
AA seq
DB search
MDVRLHLKQIAFLSFICIFLTPCGLACGPGRGYGKRRHPKKLTPLVYKQFIPNVAEKTLG
ASGKYEGKITRNSERFKELIPNYNPDIIFKDEENTNADRLMTQRCKDKLNSLAISVMNQW
PGVKLRVTEGWDEDGHHFDESLHYEGRAVDITTSDRDKSKYGMLSRLAVEAGFDWVYYES
KAHIHCSVKAENSVAAKSGGCFAGAGTVTLADGRRKRIEDLQVGDRVMAADDTGNIVFSD
FIMFMDHDPTTTRQFLVIETSNPSIKLTLTAAHLVFIVNGSAVSGMRATFASNVKPGDKV
LVSEGTHETLKSVTVKRIYTEEYQGSYAPVTAHGTILVDQMLVSCYAVIENHRWAHWAFA
PVRLSHSLMTWLFPARASNVTLQEDGVHWYSNALVHIGSWLLDRDSFHPLGISHLS
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggacgtaaggctgcatctgaagcaaattgcttttttgtcttttatctgcattttcctg
acgccttgtggattagcttgtggtcctggtagaggttatggaaaacgaagacacccaaag
aaattaaccccgttggtttacaagcaattcattcccaacgttgccgagaaaacccttggg
gcgagcggcaaatacgaaggcaaaattacaaggaattctgagagatttaaggaattgatt
cccaactataatcctgacatcatcttcaaagacgaggaaaacacaaatgctgacagactg
atgacacagcgctgtaaggacaagctgaattcgttggcgatatccgtcatgaaccagtgg
cccggtgtgaaattgcgcgtcacggagggctgggatgaggacggtcaccatttcgatgaa
tctttgcactacgagggacgggcggtggacataactacctcagacagggataagagcaag
tatgggatgctgtccaggcttgcggtggaggctggatttgactgggtctattacgagtcc
aaagcccacatacattgctctgtcaaagcagaaaattcagtcgctgctaaatcaggggga
tgctttgctggagctggcacggtgacactcgccgatgggaggaggaaacgtatcgaagat
ctccaagtgggagaccgggttatggctgcggacgatacgggaaatatcgtattcagcgac
tttataatgttcatggaccacgacccgacaaccacaaggcaattcctcgtcatcgagacg
tcgaacccctctataaagctcaccctcacagcagcgcacctggtcttcattgtaaacggt
tcggctgtttcgggtatgagagcgacatttgccagcaacgtgaagcctggagataaagtt
ctagtttctgaaggcacacacgagactcttaagagcgtcacggtgaagaggatttacact
gaagagtaccagggctcttacgcgcccgtcaccgcgcacggaaccattcttgtggatcag
atgctggtgtcttgctacgcggttattgaaaaccacagatgggcgcattgggctttcgca
ccggtccgattaagtcacagcttgatgacgtggctttttccggctcgtgcttcaaacgtc
accttgcaggaggacggcgtccactggtactcaaacgcgctcgttcacatcggctcttgg
ctgctggacagagactctttccatccccttgggatttcacacttgagctga
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