Triplophysa rosa: 130555593
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Entry
130555593 CDS
T09216
Symbol
bard1
Name
(RefSeq) BRCA1-associated RING domain protein 1 isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tros
Triplophysa rosa
Pathway
tros03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130555593 (bard1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130555593 (bard1)
04121 Ubiquitin system [BR:
tros04121
]
130555593 (bard1)
03036 Chromosome and associated proteins [BR:
tros03036
]
130555593 (bard1)
03400 DNA repair and recombination proteins [BR:
tros03400
]
130555593 (bard1)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
130555593 (bard1)
Ubiquitin system [BR:
tros04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
130555593 (bard1)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
130555593 (bard1)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
130555593 (bard1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_5
Ank_4
Ank_3
BRCT_2
BRCT
PTCB-BRCT
Ank_KRIT1
Motif
Other DBs
NCBI-GeneID:
130555593
NCBI-ProteinID:
XP_057191917
LinkDB
All DBs
Position
LG6:5759096..5786389
Genome browser
AA seq
710 aa
AA seq
DB search
MSVLQSLGERHCEDCKLDSLLNPSDVPAMPTDDRQPKISDSKKKNFKIWFSPKSRKVRCC
VEKPVAINLPNGDRVKPTTSPSSKPQDLSVFNFTSSSQESDSSSPLRKKVSKKTKSKRIC
PAYKQARRAKNPKPQTRVKREYKRLKLEAVNHQWGFGKEADIDSKDEEKVSSGDDNRRAG
KKVSFRCMGSQPEEPQNLVTQDETQVLSLDESILDNLEVGETQNSDNELLNENTQSPPQP
SPSGTLERENQDGDDPQMTPKRPRSSPGGRRRLSRSASQSTPPPPAEDPSNSLRTSRQSK
EEQNVKPLSGRRRSPVTSVFGRGQGVRSNRGSPPYMKRNHMGETPLHLAAIKGDVEEVRK
LLALGVDPNLKDNAGWTPLHEACNLGHLGVVEELLQQGALLNTPGYQNDSPLHDAARSGH
VAVVKLLVKHRASQTVLNMFGLRPVDYALTPEMQDVLRTAHEAPDPVTAPLGPPASLSKA
SGCVRETAPVVLIGSQLTPAQRKQLAKAAHLLGGKPVESFSNAVTHVVVPDASSPLSTLT
TLQGILNGCWILRFSLCGHALQANITGVYCSLQAGIWAEESVYETGEGPPRARANRDSLL
PRLFDGCFFYMMGSFHKPPKNDLLPLIKDGGGQLLNRQPKPDSDVTQTLCAAAYHAQPGS
DQALCTQYILYDPQSSYKPSKVRVGKVWSAPSTWLVDCVAAFQLLPVPEL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgtctgttttgcagtccttaggtgaaagacattgtgaagactgcaaactggattcccta
ctgaacccatcagacgtcccggccatgcccaccgatgatcgacaaccaaaaatctctgac
tcgaagaagaagaacttcaagatctggttcagccctaaaagtcgtaaagtacggtgttgt
gtcgagaagcctgttgccataaacttaccaaatggagatcgggtaaaacccaccacgtca
ccatcatccaaacctcaagacctgtctgtctttaacttcacctcctcctcccaggagtct
gactcttccagccctctgagaaagaaggtgagtaagaaaacaaagtcgaagaggatctgc
ccagcctacaaacaagcccgccgtgctaaaaaccccaaaccacagactcgggtgaagcgg
gaatataagaggctgaaactagaagcagtcaaccatcagtggggctttggtaaagaagct
gatatagacagcaaggatgaagagaaggtgagctctggagatgacaacaggagggctggt
aagaaggtgtctttccgatgcatgggcagtcagcctgaggaacctcagaatttggtgacc
caagatgagactcaagttctcagtttggatgaaagcatccttgacaatctagaagtgggt
gaaactcaaaactcagataatgagctattaaatgaaaacacccagagtcctcctcaacct
tctccttcgggaacacttgagagagagaaccaggacggtgatgatccgcagatgacacca
aaaagacccagatcaagtccaggaggcaggaggagattatctagaagcgcatcacaatcc
acacctccccctccagctgaagacccctctaatagcttgagaacttccagacagtcaaaa
gaggagcagaatgtgaagccactttcagggagaaggaggtcaccagttacgtcagtcttt
gggagaggtcaaggtgtacgaagtaaccgagggagtccgccgtacatgaagaggaaccac
atgggagagacgccactgcacttggctgcgataaagggtgatgtggaggaggtacggaag
ctccttgctctgggagtcgaccccaacctgaaggacaatgcaggctggacgccattgcat
gaggcttgtaatcttggtcacctgggagtggtggaggaactgctacagcagggggcgctt
ttgaacactccaggctatcagaacgactctccgctacatgacgctgcgaggagcggacat
gtggcagtggtcaaactcttggttaaacacagagcgtctcaaactgttctgaatatgttt
ggcctgcggcctgtggattatgcactgactccagaaatgcaggatgtcctaagaacagcc
cacgaggcacccgatcctgtgacagcccccctgggcccaccagccagcctcagtaaggca
tcaggctgtgtgcgggagaccgctccggtggtgctgattggcagtcagctgacgccagct
caaagaaagcagcttgctaaagcggctcatctgcttggagggaaaccagttgagtctttt
tctaatgcagtcacccatgtggttgttccagatgcttccagcccgttgtccaccctaacc
acgcttcagggcatcctcaatggctgctggatccttcgtttcagcttgtgtggtcatgca
cttcaggcgaacatcactggggtgtattgtagccttcaggcaggcatctgggccgaagag
agcgtgtacgagacaggtgaaggccccccacgtgcccgtgcgaacagagacagcctgctg
cctcgactctttgatggctgcttcttctacatgatgggttccttccacaaaccgcctaaa
aatgacctgcttccgttaatcaaagacggaggaggtcagcttctgaaccgccagcctaaa
cccgacagtgatgtcacacaaaccctgtgtgcagcggcctatcacgctcagcctggttca
gaccaagctctctgcacccagtatatcttatatgatcctcaaagctcctacaaaccctca
aaggtccgggtcggaaaggtttggtcggctccgtcaacttggcttgtggactgtgtagct
gcctttcagctcctgcctgtgccagagctctag
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