Triplophysa rosa: 130555600
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Entry
130555600 CDS
T09216
Symbol
ddx3xa
Name
(RefSeq) DEAD-box helicase 3 X-linked a isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
tros
Triplophysa rosa
Pathway
tros04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130555600 (ddx3xa)
03041 Spliceosome [BR:
tros03041
]
130555600 (ddx3xa)
03036 Chromosome and associated proteins [BR:
tros03036
]
130555600 (ddx3xa)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130555600 (ddx3xa)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130555600 (ddx3xa)
mRNA cycle factors
Common to processing body (P body) and stress granule
130555600 (ddx3xa)
Spliceosome [BR:
tros03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130555600 (ddx3xa)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
130555600 (ddx3xa)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
130555600
NCBI-ProteinID:
XP_057191942
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All DBs
Position
LG6:complement(8952133..8971876)
Genome browser
AA seq
734 aa
AA seq
DB search
MSHVVVDGSHGLDQQELAVLDLNLADGQGAGAGRRYIPPHLRNKDASKSAENAYSSGRQS
GYSVAPVQSYSPGWDGGRSNGFINGYHDGRMNVTANFVRGPPRSDRGGRGGYRGNRNGGS
FNQPMHNAGYGGYENKDGGWNAMVNRDAYTSFGGRSDRGKSAFFNDRGTGSRGRYERGGF
AAGTGGNSRWVEESRDEEDWSKQLPPNERLENELFAGSNTGINFEKYDDIPVEATGTDSP
VHIDSFHDVDMGEIIMGNIALSRYTRPTPVQKYAIPIIKSKRDLMACAQTGSGKTAAFLL
PVLSQIYTEGPGEALQATKASTQQENGKYVRRKQYPISLVLAPTRELALQIYDEARKFAY
RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDHCNYLVLDEADR
MLDMGFEPQIRRIVEQDTMPTKGARQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGST
SENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDFLYHEGYACTSI
HGDRSQRDREEALSQFRSGRCPIMVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGR
TGRVGNLGLATSFYNDKNSNITKDLLDILVEAKQEVPSWLENLAYEHQHKSTSRGRPKRF
SGGFGARDYRQMAGGGNTFGNRGARNTVGHGGNRGFGGNKVSNLGGFGSFGNDSYGGNYA
NYGGNYAQVDWWGN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggtcgtcgacggttcacacggtctagatcagcaggagcttgctgtttta
gacttgaacttggctgatgggcagggtgcaggcgctggtcggcgttacattcctccacat
ttgagaaacaaagatgcatcaaaaagtgcagaaaatgcttattcctctggtaggcagagc
ggttattcagtggcaccagtacagagctactctccagggtgggatggcggtcgtagcaat
ggtttcatcaatgggtaccatgacggtcgtatgaatgtcactgcaaactttgtacgtgga
cctcctcgcagtgatagagggggacgtggcggctacagaggcaacaggaacggtggttcc
ttcaaccagccaatgcataatgcaggttatggcggttatgagaacaaagatggaggctgg
aatgctatggtgaacagagatgcctacacaagctttggcggacgttctgacagaggaaag
tctgcatttttcaatgacagaggaactggatcaagaggaaggtatgagcgcggagggttt
gcagcgggaacaggagggaacagccgttgggttgaagagtctagagatgaagaggactgg
tcaaagcaattgccccccaatgagcgtctggaaaatgagctgttcgccgggagcaacacg
gggattaactttgagaagtatgacgacattcctgtggaagccactggaacagactcccct
gtgcatattgatagctttcatgatgtggacatgggcgagatcattatgggcaacatcgcc
ttgagccggtacacgcgccctactcctgttcagaagtatgcaatccctatcatcaagagc
aagagggacctgatggcctgcgcacagacaggctctgggaaaactgcagccttcctgctt
cctgtgctgagtcagatctacaccgaaggacctggagaagcactgcaggccaccaaagcc
agcactcagcaggagaatggaaagtacgtccggcgcaaacagtatcccatttctctggtt
ttggctccaacaagagagcttgctcttcagatttatgacgaggccagaaagtttgcctac
cgctccagagtgcgtccgtgtgtagtttatggaggtgctgatataggccagcagattcgt
gatttggaaagaggctgtcacctgcttgtggccacaccgggccgtctggtagacatgatg
gagcggggcaagattggcctggaccactgcaattatctggtcctggatgaggcagacaga
atgcttgatatgggttttgaaccccagatcagacgtattgtggagcaagacaccatgccc
actaaaggagctcgccagaccatgatgttcagtgccaccttccccaaggagatccagatt
ctggcccgtgactttctggaggagtacatcttcctggctgtggggcgtgtgggttccacc
tctgagaacattacccagaaggtggtttgggtggaagagaatgacaagcgctccttcctc
ctcgacctcctcaatgctacaggcaaggattctctcactctggtgtttgtggaaactaaa
aagggagcagatgcgctagaggacttcctgtaccacgagggctatgcttgcaccagtatc
catggcgaccgctctcagcgcgatcgcgaggaagctctcagccagttccgttctgggcgc
tgtcctattatggttgccactgctgtggctgcacgagggcttgacatatccaatgtgaaa
catgtgatcaactttgacctgccaagtgacattgaggaatatgtccaccgcattgggcgt
acaggccgcgtgggaaaccttggtttggccacctccttctacaatgataagaacagcaac
atcactaaagatttgctggacattctggtggaggccaaacaagaggttccttcctggctt
gagaaccttgcttatgagcaccagcacaagagcaccagccgtggacgccccaagaggttc
tctggaggctttggagccagagattaccgccagatggctgggggtggtaacacttttggc
aaccgtggtgctcgcaacactgttggccatggagggaaccgcggttttggaggcaacaag
gtgtctaatttaggtggctttgggagttttggcaatgacagctatggcggcaactacgca
aactacggaggaaactatgcccaggttgactggtggggcaactaa
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