Triplophysa rosa: 130555924
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Entry
130555924 CDS
T09216
Symbol
ifih1
Name
(RefSeq) interferon-induced helicase C domain-containing protein 1 isoform X1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
tros
Triplophysa rosa
Pathway
tros04622
RIG-I-like receptor signaling pathway
tros05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
130555924 (ifih1)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130555924 (ifih1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tros04054
]
130555924 (ifih1)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130555924 (ifih1)
Pattern recognition receptors [BR:
tros04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
130555924 (ifih1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
RIG-I_C
DEAD
ResIII
Helicase_C
CARD
SWI2_SNF2
DUF3638
Motif
Other DBs
NCBI-GeneID:
130555924
NCBI-ProteinID:
XP_057192473
LinkDB
All DBs
Position
LG6:2469505..2485765
Genome browser
AA seq
1004 aa
AA seq
DB search
MSCDQDAATRHVLDSFRDRLKRLIEVQPLLDLLHFLEDEQKGRIKASLTQNGNMRAVSTL
IDEIIQIRDVKGWSRELITALETVGCKHAANYVENNPPNTTEELENDSCIRLIGLMRLSL
VNMKTRDVSAHCFSLELLTQEDVENITAAIENQGNTSGARLLLTRVVKNETGWFSKFLKA
LEDTAHPGLARELRGEPNNEDEAMSVDTFELRTVEENEQPCASALKEMETDFRGSLPFLP
PTLSTNSSLLSDDLDSSVDSSGLGTSALSSSDNGDVDMYEEGEQMEEEDLTEDDEQSASS
REIVLRDYQMEVARPALEGKNIIVCLPTGSGKTRVAVYITREHLESRRRMEEPGKVVVLV
NKVPLVEQHYKAEFGKFLQHKYCVKPVSGASQLKISFPQIVEQNDIIICTAQILENSLAK
GKNGDEDGIKLSQFSLMVIDECHHTQKGGVYNHIMIRYLKQKHRNQQLVKQQNSPVPIPQ
ILGLTASPGVGGAKTQQKAEEHILQICANLDAFTIKTNTSEEGAKNPYKKIAIAEERKED
PFGDVIKKIMDEIHTHAELKPLCEPGTQTYEQWVVQKEQNAAKEENQKVRVCAEHLRQYN
EALHQSNTIRMSDAFCFLDKYHTEELKTKSSSDDDNKITITDTERFLFTLFKDKKAKLQE
LMGKPQYENNNLAQLKAIVLKEFSTREKARGIIFTRTRLSAIALCQWIQENPKFDEIGVR
VSHLIGGGDQSLVKPMTAAEQKDVLNKFHEGEINLLIATTVAEEGLDIADCNFVIRYGLV
TNEIAMIQARGRGRAEDSSYTLVAESGSGVAERESVNEYREKMMSKAIAKVCKMNRADYE
KKIKEFQFQAIIGEKVKKKKKQQKGMMNEPPCKISLSCRQCNKFVCSGEDIEVIDHMHHV
NVTNQFSKLFIVRENTSLQERLLDYETNGVIACKHCGRPWGSMMLYKSIECPCLHIKNFV
VAYGTKKKTYDKWSELPIRFPAFDYTQHADLFSEGSGDEDSDAD
NT seq
3015 nt
NT seq
+upstream
nt +downstream
nt
atgagctgcgatcaagacgccgcgacgcgtcacgttctagacagtttccgcgacagactg
aagcgtcttatcgaggtccagccgcttttagacctgttacatttcctcgaagacgagcag
aagggtcgaatcaaggcctcattgactcagaatggcaacatgcgcgcggtttccactctt
atcgatgaaatcattcaaatacgcgacgtgaaaggctggtcgagggaactgatcactgct
ctggagactgtcggctgcaaacacgccgcaaattatgtggagaataatccgccaaacacg
acagaagagttggagaacgacagctgcattcggcttattggtctgatgcgtctgtcactg
gtcaacatgaaaactcgtgatgtgtccgcgcactgcttctcactggaactgttaacacag
gaggatgtggaaaatattacggctgccattgaaaatcaaggcaacacctctggcgctcgc
ttgctcctcacgcgggtggtcaaaaacgaaactggctggttttccaaattcctgaaggcc
ctggaggacacggcacaccccggcctagcgcgtgagctgcggggagagccaaataatgaa
gacgaagccatgtcggttgacaccttcgagctgagaacagtggaggagaatgaacagcca
tgtgcatcggcactgaaggaaatggaaacggacttccgtggctctttgcccttcctcccc
cccactctctctaccaatagctcacttctgtcagatgatctggacagcagtgtggacagc
agtggtctgggtacatcagctctttcctcctcggataatggagatgtcgatatgtatgaa
gagggtgaacagatggaggaggaagatctcacagaggacgacgaacaatcagcgagcagt
agggaaattgtgctgcgtgactatcagatggaggtggccagaccagccctagagggcaag
aacatcatcgtctgcctcccaacaggaagcggtaaaaccagagttgctgtgtacatcaca
agggaacatttggagagtcggaggcggatggaagaacctgggaaagttgtcgttctggtc
aacaaggtgcccctggtcgagcagcactacaaggctgagtttgggaagtttctacagcac
aaatactgtgtaaaaccggtcagcggagcatcgcagctcaaaatctccttcccacaaatt
gtggagcaaaatgacatcatcatttgcacggcacagattctggaaaactctttagccaaa
ggcaagaacggcgacgaggacggaatcaaattatcacaatttagcctgatggttattgac
gaatgccatcacacgcagaaaggcggcgtatataaccacatcatgattcgctacctgaaa
caaaaacatcggaaccagcagctggtcaaacagcagaacagtccagtccccatccctcag
attctgggcctgaccgcctcacctggagtgggaggagccaagacccagcaaaaagcagag
gaacacattctacagatatgcgcaaatttggatgccttcacgataaaaacaaacacttct
gaggaaggggccaaaaacccttacaaaaagattgcaatagcagaagagaggaaagaggac
ccgtttggagacgtgattaagaagatcatggatgaaatccacacgcacgctgagctgaag
cctctctgcgagcccggtacacagacctatgaacagtgggtggtacagaaagagcagaat
gctgctaaagaagagaatcagaaagttcgagtgtgtgcggaacatctccgtcaatacaac
gaggctcttcatcagagcaacaccatacgcatgtcagatgcgttctgcttcctcgacaaa
taccacactgaagagctcaagacaaaatccagctctgatgatgacaacaaaatcacaatc
acggacacggagcgattcctcttcactttgtttaaagacaaaaaagcgaagctccaggag
ctgatggggaagccgcagtatgaaaataataacctagcgcagctgaaagcaatcgtcctg
aaggaattcagcaccagagagaaggcgagaggcatcatattcacacggacccgcctcagc
gccatcgcgctctgccagtggattcaagaaaaccccaagtttgatgaaatcggagtgaga
gtgagtcatctgattggaggaggagatcagagtctggtgaagcccatgaccgctgcggag
cagaaggatgtgttgaacaagtttcacgaaggcgagattaacctgctgatcgccaccact
gtagcggaagaagggctggatatcgccgactgcaattttgtcatacgctacggcctcgtg
accaatgagatcgccatgatacaggccagaggtcgagggagagccgaggacagcagttac
acgctggtggcggagtcaggatctggggtggcagagagagagagcgttaatgagtacaga
gagaaaatgatgagcaaagccatcgccaaagtgtgcaagatgaatcgagccgactacgag
aagaaaatcaaagagtttcagttccaagccataataggagagaaggtcaagaagaagaag
aaacagcagaagggcatgatgaatgaaccgccatgtaaaatcagtctgagctgcagacag
tgcaacaagtttgtctgttccggagaagatattgaggtcatcgaccacatgcaccatgtc
aacgtcaccaatcagttcagtaagctgtttatagtacgcgagaacacctccctgcaggag
agactgctggattatgagactaacggcgtcatcgcgtgtaaacattgcggaaggccatgg
ggttcaatgatgctctataaaagcatcgagtgtccctgtctccatatcaagaacttcgtg
gtcgcatacggtactaaaaagaaaacgtatgataaatggagcgagctgcccatacgcttc
cctgcgtttgactacacacagcacgcggatctcttttccgagggctcgggagacgaggac
agtgatgccgactag
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