KEGG   Triplophysa rosa: 130556024
Entry
130556024         CDS       T09216                                 
Symbol
col4a2
Name
(RefSeq) collagen alpha-2(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tros  Triplophysa rosa
Pathway
tros04382  Cornified envelope formation
tros04510  Focal adhesion
tros04512  ECM-receptor interaction
tros04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tros00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130556024 (col4a2)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130556024 (col4a2)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130556024 (col4a2)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    130556024 (col4a2)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tros04147]
    130556024 (col4a2)
   00536 Glycosaminoglycan binding proteins [BR:tros00536]
    130556024 (col4a2)
Exosome [BR:tros04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130556024 (col4a2)
Glycosaminoglycan binding proteins [BR:tros00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130556024 (col4a2)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130556024
NCBI-ProteinID: XP_057192653
LinkDB
Position
LG6:23951759..24039398
AA seq 1667 aa
MEGDNHLQHWNTLRCLSMCLAVLILTTEVNAGVKKYDGPCGGRDCSGGCQCYPEKGARGF
PGPLGRQGPTGPQGRQGDPGLQGPKGEKGDYGKGGAMGPKGSVGMQGVPGFDGADGVPGH
PGQPGHRGKPGADGCNGTRGVSGILGFPGMDGTPGFQGRPGLKGEKGDPLDVWIYMERFR
GDPGQPGYPGISGPDGYPGNRGPPGYGGVMGPPGLKGTKGQRGESTRILKGVKGESGDVG
EPGPPGFYPFTRPPLTDFQGVKGQKGFKGEPGTAEFYFSKGEGGVSGFPGPRGPPGSNGW
PGPRGDAGQPSAPGSKGQKGGRGEPGEPASSFDQTIVSPPGPRGERGPIGNIGPKGEKGQ
QGIPGPPASEQTVVPWAAEGPKGQKGIKGEAGESGNPATQPGPNGFDGRPGPSGPPGPKG
SLEDFFRGPQGPRGRPGSTGRKGPKGDHGLCECSTQSDSGPPGPPGELGDYGMVGEWGQH
GDQGDPGPRGINGMPGFPGARGLPGPKGGKGNLTVATEKGSPGDPGDPGISGYPGEPGRT
GYFGEDGAPGFQGPHGEGPVGEPGEKGYPGRPGSSGPQGLLGESGQVLGAIKGIRGPPGD
EGIIGPDGHPGLPGESGDCSSSGGEQLNIAGCIGDHGRPGETGVPGVPGLDGFPGVPGSQ
GPRGLSGDLGVKGVLGEPGRGGPPGPIGFVGPRGDLGLPGFKGEEGSPGQPGKPGVDGAL
GEKGEHGEVLGASSGAPGDPGLPGKRGVHGFSGDPGLKGHSGMEGMPGIIGRKGETGPSG
FQGEIGSPGPAGIFGYPGQPGKTGAPGPPGNIGPPGLSGERGDEGDPGPPGVRGFKGVIG
DPGNAGVTGNTGTPGGPGQTGTPGFDGLQGLKGVKGGDGMEGFHGKVGEKGLKGFEGLKG
ETGLPGESGIHGFEGHNGVKGDRGLSGPPGEKPIIHITPHMKEVMKGAKGETGNNGEPGF
TGPRGPKGFPGVPGTEGGDGHPGEPSDTKGTEGPPGEEGNAGPKGMPGPTGLSGIEGFPG
MDGPTGDRGTPGAYGRPGEAGIKGFKGESGLTISPKAAKGLSGETGLPGPPGENGLLGQP
GDRGSPGFNGIDGTKGHSGEPGTPGPPGSDGLKGFPGNQGSKGWRGEPGQPGTPGIQGQP
GQKGYPGLKGIFGLDGLNGQRGVQGIPGVDSWGPSGDSGQKGEKGETGIPSTQAGIPGDL
GFKGSIGDAGVKGNYGAPGVQGPPGPQGFSDKKGVSGDFGLPGTKGLPGFPGPRGIPGFP
SQFGAKGEKGNLGEGGLTGEKGTLGDRGERGPSGDPGVSGRKGERGQPGMMGFPGRRGFQ
GDRGPSGPKGDTGPPGATGLSGDKGLPPIPVKLPGERGPPGSMGIHGPMGRSGNMGPAGP
PGDEGFVGPKGHKGMPGLPGVPGTPGFRGEPGPLGYPGLQGEEGNRGQPGLPGHAGMPGR
SVSVGYLLVKHSQSDQIPMCPVGMSKLWDGYSLLYFEGQEKAHNQDLGLAGSCLPRFNTM
PFLYCNPGDVCYYASRNDKSYWLSTTAPIPMMPVEEAEIKPYISRCSVCEAPSVAIAIHS
QDITIPQCPAGWRSLWIGYSFLMHTAAGDEGGGQSLVSPGSCLEDFRTTPFIECNGAKGT
CHYFANKQSFWLTSIDQSFQTSPASETLKAGQLLSRISRCQVCMKNL
NT seq 5004 nt   +upstreamnt  +downstreamnt
atggagggtgacaaccatctacagcactggaacacattaagatgtttgtcgatgtgcctt
gcagtccttatccttacgacagaagtaaacgcaggggtcaagaagtatgatggcccatgc
ggagggagagactgcagtggtggatgtcagtgttatcccgagaagggcgcaaggggtttc
cctggtcccctcggtcgccagggccctaccggcccgcaaggccgccaaggagacccaggc
ctccagggccctaaaggagagaaaggagactatggcaaaggaggggctatgggtccaaaa
ggaagtgtgggaatgcaaggggttccagggtttgatggagcagatggcgtacctggacac
ccaggacaacctggtcatcgaggaaaacctggagctgatggctgtaatggaacacgtgga
gtctctggaatactaggatttccaggaatggatggcacacctggatttcaaggccggcca
ggtttaaagggggagaaaggggaccccttggacgtttggatctatatggaaagattcagg
ggagacccaggacagccaggctacccaggaatctctggacccgatggttacccaggtaac
agaggtccacctggatatggaggtgttatgggccctcctggtcttaaaggaacaaaagga
caaaggggtgaaagcactagaatattaaaaggagtcaaaggagagtcgggtgacgttgga
gaaccaggcccaccagggttttacccctttacccgtccacccctcacagattttcagggt
gtgaaaggccaaaaaggttttaagggcgaaccaggaactgcggaattttacttctccaaa
ggagaggggggtgtttcagggttcccagggccacggggacccccaggatcaaatggctgg
ccaggacccaggggtgatgctggacaaccaagtgccccaggaagcaaggggcagaagggg
ggaagaggtgaacccggagagccagcaagttcatttgaccaaaccatagtgagtcctccg
ggacctcgaggagagcgtggtccaataggaaatattggtcctaagggtgaaaaaggacaa
caaggtatcccaggtcctcctgcttctgaacaaacagtggttccctgggctgcagaagga
ccaaagggacaaaaaggaatcaagggtgaagctggagaaagtggcaatcctgccacccag
cctggcccaaatggttttgatgggcggcctggacccagtggaccaccgggacccaaggga
tcactggaagactttttcagaggtccacaaggaccacgtggacgtccaggaagtacggga
agaaagggaccgaaaggtgaccatggtttgtgtgaatgcagcacacaatctgactctggc
cctccgggccctcctggtgagcttggtgactatggcatggtaggcgagtggggtcagcat
ggtgatcagggagatcctggaccaagaggcatcaatgggatgccaggttttcctggtgct
cgtgggttacctggacccaaggggggaaaaggaaacctgactgtagctacagagaaagga
tcacctggagacccgggggacccaggtatcagtggttacccaggagagcctggcagaact
ggatattttggagaagatggtgctcctggttttcaaggtcctcatggagaaggtccagtc
ggtgaacctggagagaagggctacccaggtaggcctggttcctctggcccacaaggtctt
ttaggggaatctggtcaagttcttggagcgatcaaagggataaggggccctcctggagat
gaaggaataattggtccagatggacatccagggttgcctggtgaatcaggagactgcagc
tcaagtggaggagagcagttgaacattgcaggttgtattggagatcacggacgacccgga
gaaaccggagtgcctggtgttccaggattggatggatttcctggggtaccaggttcacaa
ggcccccgaggtctttctggagatcttggagtcaaaggagtgctaggggaaccaggaaga
ggaggtcctcctggaccaataggttttgtaggacctcgtggtgatttgggacttcctggc
tttaaaggggaagaaggatctccagggcagcctggtaaaccaggtgtagatggtgcttta
ggggaaaagggtgaacatggggaagttttaggagcatcttctggggcccctggagatcca
ggactgccaggaaaaaggggtgtccatggtttttctggagatccaggccttaagggacat
tcaggtatggaagggatgcctggtatcattggccgtaagggtgaaactggcccttcaggt
tttcagggagagataggaagtccaggacctgcaggaatatttggatatcctgggcagcct
ggtaaaacaggagcccctggaccacctggaaacattggaccaccaggtttgagtggagaa
agaggagatgagggtgaccctggtccccctggggtcaggggatttaaaggtgtcattgga
gaccctggaaatgctggtgtgacaggaaacactggaacaccgggaggaccaggacaaaca
gggactcctggttttgatggcctccaagggcttaaaggtgtcaaagggggcgatggcatg
gaaggcttccatggaaaggttggagagaagggtctgaaaggatttgaaggactgaaagga
gagacaggccttccaggtgaaagtggaattcatggctttgaaggccacaacggtgtaaaa
ggtgacagaggcctgtcaggccctccaggtgaaaagccaattatacatataacaccacac
atgaaagaggtcatgaagggggctaaaggtgaaactggaaacaatggagaacctggcttc
actggtcccagaggcccaaagggttttccaggtgttccaggaacagaagggggagacgga
catccaggagagccgagtgatacaaaaggtaccgagggtccaccaggggaagaaggaaac
gcagggcccaagggaatgccaggccctacaggactatctggaattgagggtttccctgga
atggatggacctacgggtgacagaggcacacctggtgcttacgggcgacctggagaagct
ggaatcaagggattcaaaggtgaatcgggtcttacaatcagtcctaaagcagcaaaaggg
ttgagtggtgaaactggtctacctggaccccccggtgagaatggactcttaggtcaacct
ggagatagaggaagcccaggttttaatggaattgatgggacgaaaggtcattcaggagaa
cctggaacaccgggacccccaggttctgatggactaaagggtttcccaggaaaccagggt
agtaaaggctggcgaggtgaaccgggacagccaggaacacctggaatccaaggccaacct
ggacaaaaaggatatcctggtcttaaaggaatatttggtttggatggcctgaacggtcaa
aggggtgtccagggtattccaggtgtggacagctggggtccttcaggtgactcgggacaa
aaaggagagaaaggagagaccggtatccccagcacacaggctggcatcccaggagatttg
ggtttcaaaggttccattggagatgcaggtgttaagggtaactatggagctcccggtgta
caggggcctccaggcccgcaggggttctctgataaaaaaggagtgtcaggtgactttgga
cttcctggcactaagggactaccaggctttcctggacccagaggaatcccaggtttccct
tctcaattcggagcaaaaggagagaaagggaatttaggtgaaggaggattaactggagaa
aaaggaaccctgggggacagaggagaaagaggaccgtcaggagatcctggagtgtcagga
agaaaaggtgaaagagggcaaccaggaatgatgggatttccaggaagacgtggctttcaa
ggtgacaggggaccttctggacctaaaggagacactggacccccaggtgctactggctta
tctggtgataaaggacttcctccaattccagtaaaattaccaggggaaagaggacctcct
ggttcaatgggtattcatggaccaatgggacggtctgggaatatgggccctgctgggcct
cctggtgatgaagggtttgtgggtccaaaggggcacaagggcatgccaggtctccccggt
gtaccaggaactccaggtttccgtggtgaacctggaccattggggtaccctggtttgcag
ggagaggaagggaaccgaggacagcctggtttacctggtcatgccggaatgcctggccgc
agtgtcagtgttggttacctgctggtgaagcacagccagtctgatcagattcctatgtgc
cctgtgggcatgtccaaattatgggatggatacagtctgctatactttgaggggcaggag
aaggcccacaaccaagacctgggtctagccgggtcgtgtctccctcgttttaacaccatg
cctttcctgtactgcaatcctggtgacgtatgctactatgctagccgaaatgacaaatcc
tattggctgtccactactgcgccaattcccatgatgcccgtggaggaggcagagataaaa
ccgtacatcagccgctgttctgtgtgtgaagccccatctgtggccattgcaatacacagt
caagatataactatcccacaatgcccagcagggtggagaagtctgtggattggctattcc
ttcctcatgcacacggcagctggagatgagggtggcggtcaatcgctggtttctccaggc
tcttgtctagaagatttccgcaccactcccttcatcgagtgtaacggggccaagggtacg
tgtcactacttcgccaacaagcagagtttctggttgacgtctattgatcagagcttccag
acgtccccagcctctgagacgctaaaagctggtcagctcctctcacgcatcagccgatgc
caagtgtgtatgaagaacctgtaa

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