Triplophysa rosa: 130556025
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Entry
130556025 CDS
T09216
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
tros
Triplophysa rosa
Pathway
tros04382
Cornified envelope formation
tros04510
Focal adhesion
tros04512
ECM-receptor interaction
tros04518
Integrin signaling
tros04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130556025 (col4a1)
04518 Integrin signaling
130556025 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130556025 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130556025 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130556025 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tros04147
]
130556025 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130556025 (col4a1)
Exosome [BR:
tros04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130556025 (col4a1)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130556025 (col4a1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130556025
NCBI-ProteinID:
XP_057192655
LinkDB
All DBs
Position
LG6:complement(23901078..23951662)
Genome browser
AA seq
1641 aa
AA seq
DB search
MRIPCGTLFLLTVSLSIDKSTAKGGCTGSSCGGCNCSGVKGSKGEGGLPGLPGMVGFPGL
QGHEGPTGPMGPKGSAGELGTPGSKGNRGPSGVAGFPGRPGIPGLPGQEGAPGPAGIPGC
NGTKGERGFDGIPGVHGLQGPPGLPGLQGMKGDPGGIIGGPIPLKGDRGLPGQPGSAGPP
GFPGPPGPIAPPGPAGPSGRPGNPGQKGEPGDRLTFQGEKGDKGERGLHGPPGPPGKNDE
ATGPGVTTYIPGPPGDTGDRGDKGEKASCLPHLPGIKGEPGPPGPLGKPGKDGLNGEKGE
RGFDGFTGTDGVKGDKGERGPPGYGGGHPGPPGPPGLPGAEGERGYPGERGSPGAPGRYI
EGPPGPPGFPGEIGQVGDKGADGQSLRGANGADGPPGQPGPPGEINGDCNIAKGPPGPPG
PSGLQGEVGQKGDQGDTCTACTAFGDPGLPGVPGPKGQQGFPGAAGSKGEKGISGPSGPH
GIPGVGGTPGLMGAPGAHGEPGDIYVAPGLKGDKGLPGTTGERGFPGIDGIPGTDGRPGQ
PGPKGEPARVGIKGERGLDGDPGVPGLSGERGPPGTPGIGRPGEHGEKGTPGYPGAPGRP
GPPGRKGESGPNISLPGPQGSPGPRGETGRPGLQGDRGPSGEPGIPGFPGEKGDPGLPEI
GSPGPPGPKGYSGIPGAAGLPGETGQPGQDGFHGRSGTPGQKGEPGRGLPGPKGSIGQPG
VSGFPGEKGKAGMPGVPGTEGRTGSPGSQGIKGDLGPPGPHGLAGPPGSPGPGDPGPPGP
MGPPGGPGLFGQTGIKGEKGLQGLPGLEMPGPPGSKGSPGVPGLPGLKGWSGAAGFPGKD
GFPGERGPKGQMGQIGITGPPGSPGTFGDPGAPGPRGDPGLTGPRGDPGLTGIKGERGET
GLQGPPGNMSDVDMGHMKGDKGDSGNRGDPGPTGTKGYPGTAGDPGMPGKDGMPGLDGQP
GDKGDTGVPGLPGHIGDPGDPGSRGHMGLPGPMGPKGGKGTSGSRGHPGFKGFEGAKGDK
GDPGTAEIGFPGPPGDKGNEGAKGLPGGLGQKGHEGTMGIPGIPGSIGPKGDPGLTGYSG
TPGKPGEKGASGLSGSSGDPGFPGRPGDPGLQGPSGPQGDKGEAGVDGIPGFSGERGEPG
RPGKGVPGTSGEPGSKGDKGNPGHPGIPGSPGIPGSKGEKGLPGFPGELGRPGEIGFPGP
SMDGPKGDRGSQGEPGEKGVTGATGEPGLPGAFGAKGVKGDVGYPGPQGSYGLKGDKGFT
GIPGESGLPGYNGPKGEMGQQGVPGFPGAKGEVGIIGSRGEIGDRGFPGLKGNEGPPGSP
GPHTFVKGDPGSPGPQGPQGPPGLEGFPGPKGQEGMNGPQGLKGADGTPGYNGHPGAKGE
PGPAGVTGPRGYPGPPGPDGIPGHIGPPGLSSMDHGFLVTRHSQTVEVPPCPGGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGQSIKPFISRCAVCEAPAMVIAVHSQTIQIPLCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIDDSDMFTKPVPTT
LKAGSLRTHISRCQVCMKRVL
NT seq
4926 nt
NT seq
+upstream
nt +downstream
nt
atgcggattccatgtggcactctttttcttctgacagtctcattgagcatagacaagagt
acagctaagggaggatgcacagggtcttcatgtggaggatgcaactgcagtggtgttaag
gggtcaaagggcgagggagggctcccaggtttgcctggtatggtgggatttcctggatta
caaggtcacgagggtcccacagggccaatgggaccaaaggggtctgcaggcgagctaggt
accccaggatcgaaaggaaacagaggcccatctggtgtggctggtttccctggtcgtcca
ggtattccaggtcttccaggtcaagaaggtgcaccaggacctgcaggaatcccaggatgc
aatggaacgaagggggagcgtggttttgatggaattccaggtgttcatggactacaggga
ccaccaggtcttccaggtttgcagggaatgaagggagacccagggggtattatcggagga
cccattcccctgaaaggagacaggggcttgccaggacaaccaggttcagctggaccacct
ggttttccaggaccaccagggccaattgcccctcctggaccagcaggaccctctggaagg
cctggtaatcctggtcaaaagggagagccgggtgacaggctgacatttcaaggggagaaa
ggagacaagggagaaagaggtttacatggtccccctggtccacctggaaagaatgatgaa
gctacaggtccaggcgtgacaacttatattcctggaccaccgggtgacacgggcgataga
ggagataaaggagaaaaagcgtcttgcttaccacatctaccaggaatcaaaggtgagcca
ggaccaccaggacctctggggaaaccaggaaaagatggactgaatggagaaaagggagaa
aggggctttgatggttttactggaactgatggcgtaaagggtgacaaaggagaaagagga
ccaccaggttatggtggtggccatcctggaccccctggtcctcctggtcttcctggagca
gaaggagagagaggttaccctggagagcgtggaagtcctggtgccccaggcagatatatt
gaaggccctcctggacctcctggtttccctggagagattggccaagtgggagacaaaggt
gctgatggtcaatctcttagaggagcaaatggagctgatggacctcctggacaacctgga
cccccaggagagatcaatggagattgtaatattgctaaaggacctccaggtcctcctgga
ccctcaggtttgcagggggaggtgggacaaaaaggtgatcaaggcgacacatgcactgct
tgcacagctttcggggacccaggattacctggcgtcccgggcccaaagggtcagcaaggt
tttcctggagcagcggggagtaaaggagagaagggtatatcgggaccttctggacctcat
ggaattccgggtgtgggtggcactccaggtttaatgggtgcccctggtgctcacggcgag
cctggtgatatatatgttgcgccggggctgaaaggagataagggtttacctggtacaaca
ggagaaagagggtttccaggcattgatggtatcccaggaacagatggtcgacctggccaa
cctggtcccaaaggagagcctgctagagttggtataaagggtgaacgtggccttgacgga
gatccaggtgtacctggtctctcaggtgagagaggtcccccaggtactccgggaattggt
cggccaggtgaacatggtgaaaaaggcactccagggtatccaggtgcaccaggaaggcca
ggaccaccaggacgtaaaggtgaatctggtccaaatataagtttacctggacctcagggt
tccccggggccacgtggggagactggcagacctggtcttcaaggtgatagaggtccatca
ggtgaaccggggattccaggatttccaggagaaaagggtgatcctgggctgccagaaatt
ggctctccaggtcctccgggtccaaaagggtattctgggattccaggagccgctggcctt
ccgggagagactggtcagccaggtcaggatggctttcatggtcgttcagggacacctggg
caaaaaggtgaacccggcaggggtcttccaggtcctaaaggctccataggtcagccaggg
gtgtcaggatttccaggagagaagggtaaagctggtatgccaggggttcctggaactgaa
ggacgtacaggttcacctgggtctcagggaattaaaggtgaccttggaccaccaggacct
catggtttggctggaccaccagggtctccagggcctggagatcctgggccacctggacca
atgggtccacctggaggccctggacttttcggtcagacaggtataaagggagagaaaggt
ttacagggactacctggtctggaaatgccaggccctccaggaagcaagggtagccctggt
gtccctgggttaccaggcttaaaggggtggtctggagcagcaggatttcctggaaaagat
ggttttcctggtgagcgtggtccaaaaggacaaatgggacaaattgggattacaggacct
cctggatcaccaggtacctttggagaccctggggcacctgggccaagaggtgaccctggc
ttgactggacccaggggagacccagggctgactggtatcaagggtgaaagaggagagact
ggtcttcaggggccacctggtaacatgagtgatgtcgacatgggtcacatgaaaggggac
aaaggagacagtggaaacagaggtgatcctggtcctacaggaacaaaggggtaccctgga
acagccggagaccctggaatgccgggaaaagatggaatgccaggattagatggacagcca
ggtgacaaaggtgacactggagttcctgggttgccagggcatatcggagaccctggagac
ccaggttcaagaggacacatgggattaccaggtccaatggggccaaaaggtggtaaaggt
actagtgggtcacggggccaccctggatttaagggctttgaaggggccaaaggagataaa
ggagacccgggtacggcagaaataggattccctggtccccctggggataagggaaatgaa
ggagccaaaggtttacctggtggacttggacagaagggacatgaaggcacaatgggaatt
ccaggtattcctggaagtataggacctaaaggagacccaggactgactggttactcaggt
actccagggaagccaggtgagaagggtgccagtggattgtcgggttcttcaggagatcct
ggatttccagggcgtccaggtgatcctggtctacagggtccttcgggtccacaaggagac
aaaggagaagcaggagttgatggcattcctggattttctggagagagaggagaacctggt
cgtcctgggaaaggagttcctggtaccagtggtgaacctggcagcaaaggtgataaaggc
aaccctggtcatcctggcattcctgggagtccaggtattcctggaagcaaaggagagaag
ggtctgccaggttttccaggggaactaggtcgccctggagaaataggatttccaggacca
tccatggacgggcctaaaggagaccgaggatctcagggggagccgggagaaaaaggtgta
acaggtgcaacaggtgaaccaggtctaccaggtgcttttggagctaaaggagtaaaggga
gatgtgggctacccaggtccacaaggctcttacggcttaaaaggagacaaaggtttcact
ggcattcctggtgaatctggactacctggttataatggaccaaagggtgagatgggacaa
cagggcgttcctggtttccctggtgctaagggtgaggttggaataataggttctaggggt
gagattggtgacagaggatttcctgggcttaaaggtaatgaaggcccccctggatccccc
gggccacacacatttgtaaagggagatcccggttcacccggaccgcagggtccccaaggt
ccacctggactcgaaggcttccctggaccaaaaggacaagagggcatgaatggtcctcaa
ggtttaaaaggagctgatgggacacctggctataatggacatcccggggcaaaaggagag
cctggcccagctggagtcactggacccagaggttaccctggacccccagggcctgatggt
atcccaggtcacattggccctcctggtctgtcctcaatggaccatggcttcctggtaact
cgtcacagtcagactgttgaagttccaccatgtccagggggtaccacgcccatatacgat
ggatactccttgctttacgtccagggcaacgagagatcacacgggcaagacctaggtaca
gccggtagctgcctaaggaagttcagccctatgcctttcctcttctgcaacatcaacaac
gtatgtaactttgcatctcgtaatgactattcgtactggctcacctctccagagcccatg
cccatgagcatggctcctatcactggccagagcattaaacccttcatcagcaggtgtgcg
gtatgtgaagcacctgccatggtgatagcagtacacagtcagaccatccagatcccactc
tgccctcgaggatgggattccctgtggatcggatactctttcgtcatgcacaccagtgct
ggtgctgagggttcaggtcaggctcttgcctctcctggctcttgtctggaagagtttcgc
tctgctcccttcatcgagtgtcacggacgcggcacctgcaactactatgctaattcatac
agcttctggctagccaccatagacgacagcgatatgtttacgaaacctgtccctacaact
ctaaaagcggggagtctacgaactcacattagcaggtgtcaggtgtgcatgaagagggta
ttatag
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integrated database retrieval system
