KEGG   Triplophysa rosa: 130556025
Entry
130556025         CDS       T09216                                 
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain
  KO
K06237  collagen type IV alpha
Organism
tros  Triplophysa rosa
Pathway
tros04510  Focal adhesion
tros04512  ECM-receptor interaction
tros04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:tros00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130556025 (col4a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130556025 (col4a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    130556025 (col4a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tros04147]
    130556025 (col4a1)
   00536 Glycosaminoglycan binding proteins [BR:tros00536]
    130556025 (col4a1)
Exosome [BR:tros04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   130556025 (col4a1)
Glycosaminoglycan binding proteins [BR:tros00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130556025 (col4a1)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 130556025
NCBI-ProteinID: XP_057192655
LinkDB
Position
LG6:complement(23901078..23951662)
AA seq 1641 aa
MRIPCGTLFLLTVSLSIDKSTAKGGCTGSSCGGCNCSGVKGSKGEGGLPGLPGMVGFPGL
QGHEGPTGPMGPKGSAGELGTPGSKGNRGPSGVAGFPGRPGIPGLPGQEGAPGPAGIPGC
NGTKGERGFDGIPGVHGLQGPPGLPGLQGMKGDPGGIIGGPIPLKGDRGLPGQPGSAGPP
GFPGPPGPIAPPGPAGPSGRPGNPGQKGEPGDRLTFQGEKGDKGERGLHGPPGPPGKNDE
ATGPGVTTYIPGPPGDTGDRGDKGEKASCLPHLPGIKGEPGPPGPLGKPGKDGLNGEKGE
RGFDGFTGTDGVKGDKGERGPPGYGGGHPGPPGPPGLPGAEGERGYPGERGSPGAPGRYI
EGPPGPPGFPGEIGQVGDKGADGQSLRGANGADGPPGQPGPPGEINGDCNIAKGPPGPPG
PSGLQGEVGQKGDQGDTCTACTAFGDPGLPGVPGPKGQQGFPGAAGSKGEKGISGPSGPH
GIPGVGGTPGLMGAPGAHGEPGDIYVAPGLKGDKGLPGTTGERGFPGIDGIPGTDGRPGQ
PGPKGEPARVGIKGERGLDGDPGVPGLSGERGPPGTPGIGRPGEHGEKGTPGYPGAPGRP
GPPGRKGESGPNISLPGPQGSPGPRGETGRPGLQGDRGPSGEPGIPGFPGEKGDPGLPEI
GSPGPPGPKGYSGIPGAAGLPGETGQPGQDGFHGRSGTPGQKGEPGRGLPGPKGSIGQPG
VSGFPGEKGKAGMPGVPGTEGRTGSPGSQGIKGDLGPPGPHGLAGPPGSPGPGDPGPPGP
MGPPGGPGLFGQTGIKGEKGLQGLPGLEMPGPPGSKGSPGVPGLPGLKGWSGAAGFPGKD
GFPGERGPKGQMGQIGITGPPGSPGTFGDPGAPGPRGDPGLTGPRGDPGLTGIKGERGET
GLQGPPGNMSDVDMGHMKGDKGDSGNRGDPGPTGTKGYPGTAGDPGMPGKDGMPGLDGQP
GDKGDTGVPGLPGHIGDPGDPGSRGHMGLPGPMGPKGGKGTSGSRGHPGFKGFEGAKGDK
GDPGTAEIGFPGPPGDKGNEGAKGLPGGLGQKGHEGTMGIPGIPGSIGPKGDPGLTGYSG
TPGKPGEKGASGLSGSSGDPGFPGRPGDPGLQGPSGPQGDKGEAGVDGIPGFSGERGEPG
RPGKGVPGTSGEPGSKGDKGNPGHPGIPGSPGIPGSKGEKGLPGFPGELGRPGEIGFPGP
SMDGPKGDRGSQGEPGEKGVTGATGEPGLPGAFGAKGVKGDVGYPGPQGSYGLKGDKGFT
GIPGESGLPGYNGPKGEMGQQGVPGFPGAKGEVGIIGSRGEIGDRGFPGLKGNEGPPGSP
GPHTFVKGDPGSPGPQGPQGPPGLEGFPGPKGQEGMNGPQGLKGADGTPGYNGHPGAKGE
PGPAGVTGPRGYPGPPGPDGIPGHIGPPGLSSMDHGFLVTRHSQTVEVPPCPGGTTPIYD
GYSLLYVQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPM
PMSMAPITGQSIKPFISRCAVCEAPAMVIAVHSQTIQIPLCPRGWDSLWIGYSFVMHTSA
GAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIDDSDMFTKPVPTT
LKAGSLRTHISRCQVCMKRVL
NT seq 4926 nt   +upstreamnt  +downstreamnt
atgcggattccatgtggcactctttttcttctgacagtctcattgagcatagacaagagt
acagctaagggaggatgcacagggtcttcatgtggaggatgcaactgcagtggtgttaag
gggtcaaagggcgagggagggctcccaggtttgcctggtatggtgggatttcctggatta
caaggtcacgagggtcccacagggccaatgggaccaaaggggtctgcaggcgagctaggt
accccaggatcgaaaggaaacagaggcccatctggtgtggctggtttccctggtcgtcca
ggtattccaggtcttccaggtcaagaaggtgcaccaggacctgcaggaatcccaggatgc
aatggaacgaagggggagcgtggttttgatggaattccaggtgttcatggactacaggga
ccaccaggtcttccaggtttgcagggaatgaagggagacccagggggtattatcggagga
cccattcccctgaaaggagacaggggcttgccaggacaaccaggttcagctggaccacct
ggttttccaggaccaccagggccaattgcccctcctggaccagcaggaccctctggaagg
cctggtaatcctggtcaaaagggagagccgggtgacaggctgacatttcaaggggagaaa
ggagacaagggagaaagaggtttacatggtccccctggtccacctggaaagaatgatgaa
gctacaggtccaggcgtgacaacttatattcctggaccaccgggtgacacgggcgataga
ggagataaaggagaaaaagcgtcttgcttaccacatctaccaggaatcaaaggtgagcca
ggaccaccaggacctctggggaaaccaggaaaagatggactgaatggagaaaagggagaa
aggggctttgatggttttactggaactgatggcgtaaagggtgacaaaggagaaagagga
ccaccaggttatggtggtggccatcctggaccccctggtcctcctggtcttcctggagca
gaaggagagagaggttaccctggagagcgtggaagtcctggtgccccaggcagatatatt
gaaggccctcctggacctcctggtttccctggagagattggccaagtgggagacaaaggt
gctgatggtcaatctcttagaggagcaaatggagctgatggacctcctggacaacctgga
cccccaggagagatcaatggagattgtaatattgctaaaggacctccaggtcctcctgga
ccctcaggtttgcagggggaggtgggacaaaaaggtgatcaaggcgacacatgcactgct
tgcacagctttcggggacccaggattacctggcgtcccgggcccaaagggtcagcaaggt
tttcctggagcagcggggagtaaaggagagaagggtatatcgggaccttctggacctcat
ggaattccgggtgtgggtggcactccaggtttaatgggtgcccctggtgctcacggcgag
cctggtgatatatatgttgcgccggggctgaaaggagataagggtttacctggtacaaca
ggagaaagagggtttccaggcattgatggtatcccaggaacagatggtcgacctggccaa
cctggtcccaaaggagagcctgctagagttggtataaagggtgaacgtggccttgacgga
gatccaggtgtacctggtctctcaggtgagagaggtcccccaggtactccgggaattggt
cggccaggtgaacatggtgaaaaaggcactccagggtatccaggtgcaccaggaaggcca
ggaccaccaggacgtaaaggtgaatctggtccaaatataagtttacctggacctcagggt
tccccggggccacgtggggagactggcagacctggtcttcaaggtgatagaggtccatca
ggtgaaccggggattccaggatttccaggagaaaagggtgatcctgggctgccagaaatt
ggctctccaggtcctccgggtccaaaagggtattctgggattccaggagccgctggcctt
ccgggagagactggtcagccaggtcaggatggctttcatggtcgttcagggacacctggg
caaaaaggtgaacccggcaggggtcttccaggtcctaaaggctccataggtcagccaggg
gtgtcaggatttccaggagagaagggtaaagctggtatgccaggggttcctggaactgaa
ggacgtacaggttcacctgggtctcagggaattaaaggtgaccttggaccaccaggacct
catggtttggctggaccaccagggtctccagggcctggagatcctgggccacctggacca
atgggtccacctggaggccctggacttttcggtcagacaggtataaagggagagaaaggt
ttacagggactacctggtctggaaatgccaggccctccaggaagcaagggtagccctggt
gtccctgggttaccaggcttaaaggggtggtctggagcagcaggatttcctggaaaagat
ggttttcctggtgagcgtggtccaaaaggacaaatgggacaaattgggattacaggacct
cctggatcaccaggtacctttggagaccctggggcacctgggccaagaggtgaccctggc
ttgactggacccaggggagacccagggctgactggtatcaagggtgaaagaggagagact
ggtcttcaggggccacctggtaacatgagtgatgtcgacatgggtcacatgaaaggggac
aaaggagacagtggaaacagaggtgatcctggtcctacaggaacaaaggggtaccctgga
acagccggagaccctggaatgccgggaaaagatggaatgccaggattagatggacagcca
ggtgacaaaggtgacactggagttcctgggttgccagggcatatcggagaccctggagac
ccaggttcaagaggacacatgggattaccaggtccaatggggccaaaaggtggtaaaggt
actagtgggtcacggggccaccctggatttaagggctttgaaggggccaaaggagataaa
ggagacccgggtacggcagaaataggattccctggtccccctggggataagggaaatgaa
ggagccaaaggtttacctggtggacttggacagaagggacatgaaggcacaatgggaatt
ccaggtattcctggaagtataggacctaaaggagacccaggactgactggttactcaggt
actccagggaagccaggtgagaagggtgccagtggattgtcgggttcttcaggagatcct
ggatttccagggcgtccaggtgatcctggtctacagggtccttcgggtccacaaggagac
aaaggagaagcaggagttgatggcattcctggattttctggagagagaggagaacctggt
cgtcctgggaaaggagttcctggtaccagtggtgaacctggcagcaaaggtgataaaggc
aaccctggtcatcctggcattcctgggagtccaggtattcctggaagcaaaggagagaag
ggtctgccaggttttccaggggaactaggtcgccctggagaaataggatttccaggacca
tccatggacgggcctaaaggagaccgaggatctcagggggagccgggagaaaaaggtgta
acaggtgcaacaggtgaaccaggtctaccaggtgcttttggagctaaaggagtaaaggga
gatgtgggctacccaggtccacaaggctcttacggcttaaaaggagacaaaggtttcact
ggcattcctggtgaatctggactacctggttataatggaccaaagggtgagatgggacaa
cagggcgttcctggtttccctggtgctaagggtgaggttggaataataggttctaggggt
gagattggtgacagaggatttcctgggcttaaaggtaatgaaggcccccctggatccccc
gggccacacacatttgtaaagggagatcccggttcacccggaccgcagggtccccaaggt
ccacctggactcgaaggcttccctggaccaaaaggacaagagggcatgaatggtcctcaa
ggtttaaaaggagctgatgggacacctggctataatggacatcccggggcaaaaggagag
cctggcccagctggagtcactggacccagaggttaccctggacccccagggcctgatggt
atcccaggtcacattggccctcctggtctgtcctcaatggaccatggcttcctggtaact
cgtcacagtcagactgttgaagttccaccatgtccagggggtaccacgcccatatacgat
ggatactccttgctttacgtccagggcaacgagagatcacacgggcaagacctaggtaca
gccggtagctgcctaaggaagttcagccctatgcctttcctcttctgcaacatcaacaac
gtatgtaactttgcatctcgtaatgactattcgtactggctcacctctccagagcccatg
cccatgagcatggctcctatcactggccagagcattaaacccttcatcagcaggtgtgcg
gtatgtgaagcacctgccatggtgatagcagtacacagtcagaccatccagatcccactc
tgccctcgaggatgggattccctgtggatcggatactctttcgtcatgcacaccagtgct
ggtgctgagggttcaggtcaggctcttgcctctcctggctcttgtctggaagagtttcgc
tctgctcccttcatcgagtgtcacggacgcggcacctgcaactactatgctaattcatac
agcttctggctagccaccatagacgacagcgatatgtttacgaaacctgtccctacaact
ctaaaagcggggagtctacgaactcacattagcaggtgtcaggtgtgcatgaagagggta
ttatag

DBGET integrated database retrieval system