Triplophysa rosa: 130556055
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Entry
130556055 CDS
T09216
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
tros
Triplophysa rosa
Pathway
tros03013
Nucleocytoplasmic transport
tros03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130556055 (upf3a)
03015 mRNA surveillance pathway
130556055 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130556055 (upf3a)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130556055 (upf3a)
mRNA cycle factors
P-body specific factors
130556055 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
130556055
NCBI-ProteinID:
XP_057192699
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All DBs
Position
LG6:8142896..8149866
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AA seq
481 aa
AA seq
DB search
MRSEKEQRTGSRERGSVEIQFRECQREHDNVAVNPKHKEEKKEIFSKVVIRRLPPSLSKD
QLEEQLSPLPSFDYFEFFPADQSLYPHLFSRAYINFKNQEDIIIFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKVSKKKLKKKDAKAGTIEEDPEYRRFLENYSCDEEKSVANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKLEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKEADKQKKLSEKEIKIKLLKKCNRDDDVDSDRLKDKGDSGETEKNRWEKPPGHTKSK
DSKDPKGQIESDKEQRESHGRRQRDKEHRGRDEDRKRQRHHYEFDKFMRRKEETKWGKGY
CQDRAKKDQHHGYSYCPETGDKLGKDDREDMGNRKERIRNKSVLVHQEKRTSQSEGPDQI
GGALPAKDRPAMQLYQPGARNRKRMGSGNKTFDFPPISPEHEGEPCYKTIIGTGSEKSAD
E
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggagcagagaacaggaagcagggagagaggcagcgtcgagatccag
ttcagggagtgtcagagggagcatgacaacgtcgcggtgaacccgaagcacaaggaggaa
aagaaggagatcttcagcaaggttgtcatacgccgactgccccccagtctatcaaaagac
cagcttgaggagcagctgagtcctcttccatcttttgactattttgagttcttccctgct
gatcagagcctatacccacatctcttctcaagagcatacatcaacttcaagaaccaagag
gatattattattttcagagatcggtttgatggctatgtattcattgacaataaaggccaa
gagtatccggctgttgtagaattcgcaccatttcagaaagtttctaaaaagaagttaaag
aagaaagatgctaaagcaggaaccattgaagaagacccagaatacagacgatttctggaa
aactactcttgcgatgaggagaagtcagtggccaacccagaaacactactgggagagatt
gaagctaaaactcgagaactaatagccaaaaggacaacaccattactggaatacattaaa
aacaagaagttagagaaacagaggatcagagaggaaaaaagagaggagcgacgaaggaga
gaactggaaaagaagcgtcagagggaggaagagaagagaaagcgcagagaggaggagagg
cgaaagcgcaaggaggccgacaagcagaaaaagctctcagagaaggagataaaaatcaag
cttctgaagaagtgtaacagagatgatgatgtggactcagacagactgaaagataaagga
gacagcggagagactgaaaagaacagatgggaaaagccgccaggacacacaaagtcaaag
gattctaaggatcctaagggtcaaatcgagagtgacaaggagcagcgggagagccatggc
cgtcgccagagagacaaagagcatcgtggcagagacgaggatcgtaaacggcaaaggcat
cactacgagtttgataagttcatgcgacgcaaggaggagaccaaatggggtaaaggctac
tgccaggacagggccaagaaagaccaacatcacggctattcctactgcccagagacgggc
gacaaactcggtaaagatgaccgagaagacatgggcaacagaaaagaacgcattcgtaac
aagtctgtgttagtgcatcaggagaaaaggacttcccaatctgaggggccagaccagata
ggaggggctctgccagcaaaggaccgcccggcaatgcagctttaccaacctggtgcccga
aaccgcaagcgcatgggctccggaaacaagacctttgactttccgcccatttcacctgaa
catgaaggagaaccctgctacaaaacgatcataggaacaggctcggaaaaaagtgcagat
gagtga
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