Triplophysa rosa: 130556064
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Entry
130556064 CDS
T09216
Symbol
col18a1a
Name
(RefSeq) collagen type XVIII alpha 1 chain a isoform X1
KO
K06823
collagen type XVIII alpha
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tros04147
]
130556064 (col18a1a)
00535 Proteoglycans [BR:
tros00535
]
130556064 (col18a1a)
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130556064 (col18a1a)
Exosome [BR:
tros04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
130556064 (col18a1a)
Proteoglycans [BR:
tros00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
130556064 (col18a1a)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130556064 (col18a1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Fz
Collagen_trimer
DUF1554
Motif
Other DBs
NCBI-GeneID:
130556064
NCBI-ProteinID:
XP_057192721
LinkDB
All DBs
Position
LG6:complement(5226859..5301159)
Genome browser
AA seq
1588 aa
AA seq
DB search
MDGRNTSFADNQFNESVSLKNMSRNLFGDYFTGHDNNNTTQYSLEYSVSDHLLTNESDRS
RTPRCLPVDSKLPFCTRMGTKSIAVPNFLNQSSVEEVHVVLTEWAWLLRSRCHHSLEWFF
CLLLTPRCVPSGLLPPLPCRSFCEVLRDSCWTLLDEGRLPLECHSLPEEKHDGYQCLSVS
NQKEESGVSLLQLIGDPPPDGITETYSSDNSLGYVFGPSSNVGQSAAAHLPNPFHRDFSL
IFNVKPTSTKPGVIFSITDPSQNFMYVGVKLSGVQKGKQDIIFYYTEPDSQSSYEAARFS
VPSMQNTWTRFSIRVLNEQVSLYFKCDSDPQVLNFERSPDDMDLDAGAGVFVGHASGSDP
DKFLGVIGDLRVLKDPGAAERHCEEDEDDSDATSGDGPSGYGESEPPVQPTPPSSRPIQQ
PPLTNKLPDTRKQQTGSVDHSRRTSGSYDDSRQTGSYGDSRQTSAAHGGSRKTVSHGDSR
QTSGSYGDSRQTLNSVGISRRISGSYDDSRPASNAVDYSLRTSGSADDGLRYSVESRLTP
AGEKGDRGEKGVKGDRGPGGPKGDSGSASVSGGSAKGEKGGVGEKGMKGNSGFGYPGSKG
DLGPPGSPGPPGPPGPSAEVEVRGDGSVVERVTGPRGPPGPPGPSGPAGTDGEPGDPGED
GKTGPVGPPGFPGIPGNSGPKGDKGDRGEGQPGPRGPPGPPGPPSRSDRPTFVDMEGSGL
DMDVMRGLPGLPGPQGPAGPPGPPGTASSGSGGFGPPGPPGQNGAPGQPGLPGIAGADGK
SGSPGPRGEKGDAGELGLPGPVGVKGAQGSPGLPGQPGETGLAGLPGPMGPVGPSGPPGP
PGPSYHVGFDDMEGSAIQFGSIPGVRGPAGIQGPPGLPGLPGKPGLPGPPGGKGSEGPQG
RDGRPGLDGFPGPQGLRGDKGDRGDRGEPGRDGTGLPGPPGPPGQIVYQYAENYDGAGGT
GPQGGLGPPGQAGFPGPMGPKGDRGEPGAPGYAIKGEKGEPGLIVGPDGNPFYLGGSTGS
QGERGIPGPVGPSGPAGPQGPKGEFGMPGRPGRPGVNGYKGEKGEAGSGSGNGYQGSPGP
PGPPGPPGPAVPLERFSRYEDFARTFTAPKGDKGDPGAPGIPGSPGFGTNFDIYTLKDEM
KGELGEPGLKGEKGEPGGGFYDPRLGGVQGPPGSPGLPGPKGDSIRGPPGPQGPSGPPGV
GYDGRPGVPGPPGAPGPPGTPSLPGPYRPSLSIPGPPGPAGPPGSPGHGSGVTVLRSYDL
MLATARRHTEGALIYILDRSDLYVRVQNGVRQVMLGDYKPFHGDLDNEVAAVQPPPVVQY
SQDHTSNNGAEQISPPHNPIELPRESENRNPSTPDSSYPDPRYPPQPDPRYPPHTDSRYN
SGHLPIRFPVTPARRPNPPVNQPEGHTHTSGPGLHLIALNSPQVGNMRGIRGADFMCFQQ
ARAVGLTGTFRAFLSSKLQDLYSIVRKSDRETLPIVNLKDQVLFKNWESLFSDSESRMKE
NASIYSFDGRDVLRDSAWPGKMIWHGSNGKGHRQMDNYCETWRAGDHAVTGLSSNLQSGQ
LLQQTPSSCSGSYIVLCIENSYMTQSKK
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atggatggacgcaacaccagcttcgctgacaaccaatttaatgaaagtgtttctttgaaa
aacatgagccgtaatttatttggtgattattttactgggcatgataataataacacaact
cagtattctcttgaatactctgtctcagatcatttactaaccaatgaaagtgaccgctcc
cgaaccccacgctgcttgccggttgattccaaattgccattttgcaccagaatgggaaca
aaaagtatcgccgtgcctaatttcctaaatcaaagcagcgtggaggaagtacatgtggtc
ttgaccgaatgggcgtggctcttacggtcacgctgccatcatagcttggaatggtttttc
tgcctgctgttgacgccgcggtgcgtcccgtctggactgctgcccccgctgccctgtcgc
agtttctgcgaagtcctgcgagacagctgctggacgctgctggatgagggccgcctcccc
ttggagtgccattctctgcctgaagagaagcatgatgggtatcagtgcttgtcagttagt
aaccagaaagaagaaagtggagtatctctgttgcagttaatcggtgatcctccaccagat
ggcatcactgaaacctacagctccgataacagcctcggctacgtgttcgggccgagctcc
aacgtgggccagtcagctgccgcccacctgcccaaccctttccaccgtgatttctcgctc
atcttcaacgtcaaacccacatccaccaagccaggtgtcatcttttccatcactgacccc
tctcagaacttcatgtatgtgggtgtgaagctgtcgggggttcagaaaggcaagcaggac
atcatcttctactacaccgagccggattctcaaagctcatatgaggcggccaggttctcc
gtgccctccatgcagaacacctggacgcggttttccatccgtgttctcaatgagcaggtg
tccctgtatttcaagtgtgactctgacccacaagtcctcaactttgagcgctccccagac
gatatggacctggacgctggggccggagtgtttgttggtcacgccagtggatcagaccct
gataaattcctgggtgtaatcggtgatctaagggtgttgaaagaccctggggcggctgag
cgtcactgcgaggaagatgaggatgactctgatgcgacatcaggtgacggaccgagtggc
tatggagaaagcgaaccaccagtccagcccacacctccctcctctcggccaatccagcag
ccaccgttgaccaataaactgccggacactagaaagcagcagacaggatctgttgatcac
tctcgccgaacttctggctcatatgatgattctcgacaaactggttcatatggcgattct
cgacaaacatctgcagcacacggtggttctcgaaaaactgtctcacatggtgattcccgg
caaacgtctggttcatacggtgattcccgtcagaccctcaactcagttggtattagcagg
cgaatttcaggctcatacgatgattctagaccagcttcaaacgcagttgactactctctc
agaacatcaggctcagctgatgatggcctgcggtattctgtggagtccagactcactcct
gcaggagaaaagggcgacagaggagagaagggggtcaaaggtgaccggggccctgggggg
ccaaagggcgattcgggatctgcctctgtgtctggtggaagtgcaaaaggagagaagggt
ggtgtaggagagaaaggaatgaagggcaattctggttttggttatcctggctcaaaggga
gaccttggccccccggggtctccaggtcctcctggtcctccaggacccagtgcagaggta
gaggtaaggggcgatgggtcagtagtggagagggtgacaggaccgagaggaccacctggg
ccaccgggaccctcaggacctgctggaactgatggagagccaggtgaccctggtgaagat
ggtaagacgggacctgttggaccccccggttttccaggtattccggggaattcaggacct
aaaggagacaaaggcgaccgaggtgaaggccaaccaggaccccgtgggcctccaggacct
cctggacccccatctcgctctgacagacctacattcgttgacatggagggttctggtttg
gatatggatgttatgcggggactcccaggtttgccaggcccacaaggtcctgccggtccc
cctggacctcctggcaccgcgtcttcagggtctggtggtttcgggcctcccggcccaccc
ggacaaaatggggctccaggtcaaccgggacttccgggtattgcaggtgctgatggaaaa
tcaggctcacctggaccaagaggagagaagggtgatgccggtgagctgggtttgcctggg
cctgtgggagtgaagggtgctcaaggttctcctggtcttcctggtcaaccaggagagact
ggacttgctgggcttcctggaccaatgggacctgttggaccatctgggccacctggtcct
cccggcccaagctatcatgttggttttgatgatatggaaggatctgctattcaattcggt
tcaattcctggagtaagaggacctgcagggatccagggacctcctggtttgccaggacta
ccaggtaagcctggtttacctggacctcctggtgggaaaggcagcgaaggacctcaggga
agagatggacgtcctgggttggatggcttccctggaccacagggactaaggggagacaaa
ggtgacagaggcgatagaggtgaacctggtcgagatggcactggtcttccgggtccaccc
ggaccacctggccagattgtttatcagtacgctgaaaattatgatggagctggaggaaca
ggacctcagggtgggcttggtcctccaggtcaagctggattcccaggcccaatgggaccc
aaaggtgacagaggtgaacctggagcaccaggttatgccattaagggtgagaaaggagaa
cctggacttattgtcggacctgatggaaacccattttacctcggtggatcgacaggctcg
cagggtgagagagggatccctggaccagttggaccttctgggccagctggacctcaaggt
ccaaaaggtgaatttggaatgccaggcaggcccggccgtccaggtgtgaacggttataaa
ggtgaaaagggagaagcagggtcaggttctggaaatggctaccagggttcccctggaccc
ccaggaccccctggtccccccggccctgccgtgcccttggaaagattcagcagatatgaa
gattttgcgagaacttttacagctccgaaaggggacaaaggagaccctggcgcccctggc
attcctggatcccctggttttggaactaattttgatatctacacgcttaaggatgagatg
aagggagaacttggcgagcctggtcttaaaggagagaaaggagaaccaggcggtggattt
tacgatcctcgtttaggaggtgtacagggacccccaggaagccctggacttcctggacct
aaaggagactccatcagaggtccacctggaccgcagggcccgtctggaccacctggagta
ggttatgatggtcgtccaggagttccaggacccccaggagctcccggtcctccagggaca
ccatcattgccagggccctatagaccatcactcagtattcccgggcccccaggtcccgca
ggacctcctggaagccccggtcatggatcaggggtgactgtgctcaggtcttatgacttg
atgctcgccacagcgcgcagacacacagaaggagctcttatatatattttggacagaagt
gacctctacgtcagagttcaaaatggagtcagacaagtgatgcttggagattataaaccc
ttccatggagatctggacaatgaggtagcagcagtccagccacctcctgtggtccagtat
tcccaggaccacacatccaacaacggagcagaacagatttccccaccccacaatcccatc
gagttgccgagggagtctgaaaacaggaaccccagcacgcctgactccagctacccagat
ccacgatatccccctcagcccgaccctagatacccaccccacaccgacagcaggtacaac
tctggccatttaccaatcagattccctgtgacccctgctcgccgtcccaacccccccgtc
aatcaaccggaaggccacacgcacacatctgggccagggttgcatcttattgccctcaac
tcgccacaagtgggcaacatgagaggcattcgtggagcagacttcatgtgctttcagcag
gctcgggccgtggggctgacgggaacgttcagagcattcctttcttccaaactccaggat
ctctacagcatcgtgcgcaaatctgaccgagagacactaccaattgttaacctcaaggat
caagtgctgttcaaaaactgggagtctctcttcagtgattcagagagccggatgaaggaa
aatgcttccatttactcgtttgatggtagagacgtcttgagagacagtgcctggccaggg
aagatgatctggcacgggtccaatggtaagggtcaccggcagatggataactactgtgag
acgtggagggctggagaccacgcggtgacaggcctgtcctcgaatctgcagtcgggtcaa
ctcctccagcagacccccagcagctgttccgggtcttacatcgtgctgtgtatcgagaac
agctacatgacacagtccaagaaataa
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