Triplophysa rosa: 130556314
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Entry
130556314 CDS
T09216
Symbol
scn1lab
Name
(RefSeq) sodium channel, voltage-gated, type I like, alpha b isoform X1
KO
K04834
voltage-gated sodium channel type II alpha
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tros04040
]
130556314 (scn1lab)
Ion channels [BR:
tros04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
130556314 (scn1lab)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
GPHH
IQ
Lustrin_cystein
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
130556314
NCBI-ProteinID:
XP_057193157
LinkDB
All DBs
Position
LG7:complement(26377734..26409427)
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AA seq
1998 aa
AA seq
DB search
MAAQLLVPSGPDSFRPFLPESLAAIERRIAEEAAQRPKGERRPDDDDENGPKPNSDLEAG
KSLPFIYGDVPSAFVSVPLEDLDTYYSNQNTFIVLNRGKTIFRFNATPAVYILSPFNPLR
RISIKILVHAMFSFVIMCTILTNCAFMTLSNPPEWAKNVEYTFTGIYTFESLIKILARGF
CVGKFTFLRDPWNWLDFSVILMAYVTEFVNLGNVSALRTFRVLRALKTISVIPGLKTIVG
ALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRQKCIRRPLGNVTENTTALLNFGSE
LHNYTFNWTEYISDTSNYYYLPGRRDALLCGNSSDAGQCPEGYYCIKAGRNPDYGYTSFD
TFSWAFLSLFRLMTQDFWENLYQQTLRAAGKPYMVFFVLVIFLGSFYLVNLILAVVAMAY
DEQNQATIEEAQQKEEEFQAMLEQLKRQQEEAQVAAAAATESGEYSGRGVLSEESSSGGS
RVSSKSAKERRNRRKKRKQREEEEKADQEKFHKSASEDSIRRPGFRFSMDANRLSYEKKC
STPNQSLLSIRGSLFSPRRNSRASLFSFRGRARDFGSENDFADDEHSTFEDSDSRRGSLF
VPRCMERRSSAVSHCSLAPRIMLPANGKMHCTVDCNGVVSLVGGTSVPTSPIGRLLPEGT
TTESEARKKRSGSHQPSDYLDDTVARKRAMSVASILTNTMEELEESRQKCPPCWYKFANG
FLIWDCCPTWLKVKEIVNMIVMDPFVDLAITICIVLNTLFMAMEHYPMTKEFNHVLSVGN
LVFTGIFTAEMCLKLIALDPYYYFQQGWNIFDGIIVSLSLMELGLANVEGLSVLRSFRLL
RVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYRECVCKIS
KDCELPRWHMDDFFHSFLIVFRVLCGEWIETMWDCMEVAGQSMCLIVFMMVMVIGNLVVL
NLFLALLLSSFSADNLAATDDDSEMNNLQIAVGRIQKGIALVKSALRHFLQRLCLSAAKP
GALDEEKPLDDLHVVGKENCLSNHAPVAVDLTLDCLKGGCVSPGNGVEGHVKYGIEEGDY
MSFIHNPSLTVTVPIAVGESDFENLNTEDFSSDSSDVEGSKEKLPIDTVLSSSEGSTVDI
RPPGEGAESVELEPEESLDPEACFTEGCVMRFQCCQVDVEKGNWKSWWVLRKTCFIIVEH
NWFESFIIFMILLSSGALAFEDIYIEQRKTVKTVLEYADKVFTYIFILEMLLKWVAYGFV
KYFTNAWCWLDFLIVDVSLVSLVANALGYSELTAIKSLRTLRALRPLRALSRFEGMRVVV
NALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKYYHCINITADEMFPIDVVNNKSDCM
ALIANNESAHWKNVKINFDNVGAGYLALLQVATFKGWMDIMYAAVDSRNLEQQPDYESNL
YMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKLGGQDIFMTEEQKKYYNAMKKLGSK
KPQKPIPRPANKFQGLVFDFITKQAFDIVIMILICLNMVTMMVETDDQTKEMDDVLYWIN
LVFIILFTGECILKMISLRHYYFTIGWNVFDFVVVILSIVGMFLSDIIEKYFVSPTLFRV
IRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSNFAYVKR
EAGIDDMFNFETFGNSMLCLFQITTSAGWDGLLAPILNKQAPECDSETEHPGSIYRGDCG
NPSVGIFFFVSYIIICFLIVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWERFDP
NATQFVEYHKLSDFADALDPPLRIPKPNKIQLIAMDLPMVSGDRIHCLDILFAFTLRVLG
EEGEMDALRGQMEDRFMASNPSKVSYEPITTTLRRKHEEMSVIIIQRAFRRYRIRHTVKK
ALEAYRQRLKDKVAPIQEKEVLVIGKFHDNSTSDKTDMTPSSASPPSYNSVAKSEKDKYE
KERREKEDKAKDARDRKK
NT seq
5997 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcagcttctcgttccatccggacccgacagcttccggcccttcctgcccgag
tctctcgctgcaatcgagcgtcgcatcgcagaggaggcggcccaacggcccaaaggcgag
agacggcccgatgatgatgacgaaaacgggcccaaacccaacagcgatctggaggcgggc
aagtccctgcccttcatctacggagacgttccgtccgcgttcgtgtccgtcccgctggag
gacctggacacttactacagcaaccaaaatacctttatagtattgaatcgcgggaaaaca
atattccgctttaacgctacgccggccgtgtacattttgagccccttcaatcctttgagg
agaatctctatcaagatcctggtgcatgcgatgttcagttttgtgatcatgtgcacaatc
ttgaccaactgcgccttcatgaccctcagcaatcccccagaatgggccaagaatgtggag
tacacattcacagggatctacacgttcgagtctctcattaagatcctggcgcggggcttc
tgcgtggggaagttcactttcctgcgggacccctggaactggctggatttcagcgtcatc
ctgatggcgtatgtaactgagtttgtaaacctaggcaatgtgtcagctctccgcactttc
agagtgctcagagctttgaaaactatctcggtcatcccagggctgaagaccatcgttggc
gctttgatccagtcggtgaagaagctgtcagacgtgatgatcctgacggtcttctgtctg
agcgtgtttgctctgataggactgcagctcttcatgggaaacttgaggcaaaagtgcata
agaaggccgctgggcaatgtcacggagaacaccacggccctattaaacttcggctcggag
ctgcacaactacaccttcaactggacggagtacattagcgataccagcaattattattac
ctccccggccgcagagatgctttgctgtgtggtaattcaagcgatgcaggacagtgtcca
gagggctactattgtataaaagccggtcgtaatcctgactatggctacacaagcttcgat
acgttcagctgggcctttctttcactcttcagactcatgacacaagacttctgggaaaat
ctctaccagcagaccctacgtgcagctggaaagccctacatggtgttttttgtgctggtt
atcttcctgggctctttctatctggtgaatctcattctggctgtggtggccatggcatac
gatgagcaaaaccaggccactatagaggaggcccaacagaaggaggaggagtttcaagcc
atgttagaacagttaaagagacaacaggaggaggcacaggttgccgcggcagcagcaaca
gagagtggggagtacagcgggaggggggttctgtcggaggagagctcctccggtgggtcc
agagtcagctccaagagcgcaaaagagcgacggaaccggaggaagaagagaaaacagagg
gaggaggaggagaaagccgatcaggagaagtttcataagtctgcgtcagaggacagcatc
agacggccaggcttccgcttctctatggatgctaaccggctctcctatgagaagaaatgc
tccactccaaatcagtcgcttctcagcatccgcggttctcttttctccccgaggagaaac
agccgcgcgagtctgttcagtttccgcggccgggcgcgagacttcggctcggagaacgat
tttgcagatgacgagcacagcaccttcgaggacagcgacagtcgacgcggatcgctcttt
gtacctcgatgcatggagaggcggagctccgctgtcagtcactgcagcctcgccccccgg
atcatgctgccggccaatggaaagatgcactgcaccgtcgactgcaacggcgtggtgtct
ctggtgggtggcacgtctgtgccaacatcaccgatcggccgcttgttaccagagggcacg
accacagagtctgaagctcgtaagaaacgttcaggatcacaccagccgtcggattatcta
gacgacacggtcgccagaaaaagagctatgagcgtggccagcattctgaccaacactatg
gaagagctggaggagtcgagacagaagtgtcctccctgctggtataagtttgcgaacggt
tttttgatctgggactgctgtccgacgtggctgaaggtgaaggagattgtcaatatgatc
gtgatggatccattcgtagacctggccataaccatctgtattgtcctcaacactctcttc
atggctatggagcattatcccatgacaaaagagttcaatcatgtgctgtctgtgggaaac
ttggtgttcactgggatcttcacagccgagatgtgtctgaagctgatcgccctcgacccg
tattattacttccagcagggctggaacatctttgacgggatcatcgtgagtctgagtctc
atggagctgggcctggccaacgtggagggtctttctgtgttgcgttcttttagattgtta
cgagtctttaaactagcaaagtcgtggcccactctgaacatgctgataaagatcatcggt
aactcagtcggtgccttggggaacctgaccctcgtcctggccatcatcgtcttcatcttc
gctgtggtggggatgcagctgtttggaaagagctaccgtgaatgcgtctgtaagatctca
aaggactgcgagctgcctcgctggcacatggacgacttctttcactccttcctgatcgtg
ttccgggtgctctgcggcgaatggatcgagaccatgtgggactgtatggaagtggccgga
cagtccatgtgtctcattgttttcatgatggtcatggtcattggaaatctggtggtgttg
aacctcttcctggccttgctcctgagctctttcagcgccgacaatctggcggccacggac
gacgacagcgaaatgaacaacctgcagatcgccgtgggcagaatacagaaaggcatcgcg
ctggtcaaatccgctctccgccacttcctccagcgtctgtgcctgtccgccgccaaacct
ggcgccctggacgaagagaagcccctcgacgacctccacgtcgtcggcaaagagaactgc
ctctccaaccacgctccggtggccgtcgacctcaccttagactgtctgaaggggggctgc
gtctcccccggcaacggggtggagggtcacgtgaagtacggaatcgaggaaggcgactac
atgtcgttcatacacaatcccagcctgacggttaccgtgccgatagcggtgggagagtcg
gactttgagaatctcaacacggaagattttagcagcgattcgtcggacgtggagggcagt
aaagagaagctgccgatcgacaccgttctcagttcctcagaaggaagcacggtggatatc
cggcctcccggagagggggcggagtctgtcgagttggagccggaggagtcgctggacccg
gaggcctgttttactgaaggctgcgtgatgagatttcagtgctgtcaggtggatgtagag
aagggaaactggaaaagttggtgggttctcaggaaaacctgcttcatcattgtggagcac
aactggtttgagtccttcatcatcttcatgattttactcagcagtggagccctggccttt
gaggacatttacatcgagcagcgcaagacggtcaagacggtgttggagtacgccgataaa
gtcttcacatacatctttattttggagatgcttctgaaatgggtcgcgtacggcttcgtc
aaatatttcaccaacgcctggtgctggctggactttctgatcgttgatgtgtcgctggtg
agtctggtagcgaatgctcttggttactctgaactaactgccattaagtccctgagaaca
ctgcgtgctcttagacctctgagagctttgtcacgcttcgagggaatgagggttgtggtg
aacgctctgctgggagccattccttccatcatgaatgtgctgctggtgtgtctgatcttc
tggttgatcttcagcatcatgggggtgaatcttttcgctgggaaatactaccactgcatc
aatattacagctgatgagatgtttcccatcgacgtggtcaacaacaaatccgactgcatg
gccttgatcgcaaacaatgaatcagcacactggaaaaacgtgaagattaatttcgataat
gttggagccggatacctggcactactgcaagtggccacgtttaaaggatggatggacatc
atgtatgcggccgtggactctcgcaatttggagcaacagccggactatgaatcgaacctt
tacatgtacctgtacttcgtcatctttatcatcttcggctctttcttcaccctcaatctc
ttcattggtgtcatcatcgataactttaaccagcagaagaagaagcttggaggtcaggac
atcttcatgacagaagagcagaagaaatattacaatgccatgaagaagcttggatcgaag
aagcctcagaagcccattcccagacctgcgaacaagtttcaaggtctcgtctttgacttc
atcaccaaacaagccttcgacattgtcattatgatcctgatctgcttgaacatggtgacc
atgatggtggaaaccgacgaccagacgaaggagatggacgatgtcttgtactggataaac
ttggttttcatcatcctcttcactggagaatgcattctcaagatgatctccctgcggcac
tactacttcaccatcggctggaacgtcttcgactttgtggtggtgattctgtcaatagtt
ggcatgttcctctccgacattatcgagaaatactttgtttcgccgacgttattccgagtc
attcggctggccagaatcggacgcattcttcgtctcatcaaaggagccaaaggcattcgt
actctcctgtttgccttgatgatgtcacttcctgccttgttcaacattggccttctcctc
ttcctggtcatgtttatctatgccatcttcggaatgtctaacttcgcctacgtgaagcga
gaggcggggatcgacgacatgtttaacttcgagacgttcgggaactctatgctctgcttg
ttccagatcaccacatccgcgggatgggacggcctcctggcgcccattctgaacaaacag
gctcccgaatgcgacagcgaaacggagcacccgggcagcatttaccgcggcgactgcgga
aacccttcggtcggcatcttcttcttcgtgagctacatcatcatctgcttcctgatcgtg
gtgaacatgtacatcgccgtgatcctggagaacttcagcgtggccaccgaggagagcgcc
gagccgctcagcgaggacgactttgaaatgttctacgaagtctgggagcgcttcgacccc
aacgccacacagttcgtggagtaccacaagctgtccgacttcgcggatgctctggaccct
cccttgcgcatccctaaacccaacaagatccagctgatagccatggacctgcccatggtg
agcggcgatcgaatccactgcctggacatcctgttcgccttcacgctgagggtcctgggc
gaggagggtgagatggatgccctgagaggacagatggaggatcgattcatggcctccaat
ccgtcgaaagtctcttacgagcccatcaccacgacccttcggcgcaaacacgaggagatg
tccgtcatcatcatacagagggccttccgacgctaccgcataaggcacacggtaaagaag
gccttggaagcgtaccgccaacggctgaaggacaaagtagcgcccatccaggagaaggag
gtgctcgtcatcggaaagtttcacgacaactcgacgtcagacaaaacggacatgactccg
tcatccgcctctccgccgtcctacaacagcgtggccaaatcggaaaaggacaaatatgag
aaggaaaggagagagaaggaggacaaagcaaaagacgcgagggacagaaaaaaatga
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integrated database retrieval system
