Triplophysa rosa: 130557016
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Entry
130557016 CDS
T09216
Symbol
tgfbrap1
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1 homolog
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
tros
Triplophysa rosa
Pathway
tros04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
130557016 (tgfbrap1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tros04131
]
130557016 (tgfbrap1)
Membrane trafficking [BR:
tros04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
130557016 (tgfbrap1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
130557016
NCBI-ProteinID:
XP_057194406
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Position
LG7:20666496..20681474
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AA seq
867 aa
AA seq
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MSVKAFELVPAVEREQVMGDKVRINIECIECCGKHLYLGTNDCFIHHFLLEEHTTAKGML
AYNAHKLLHKFLGLKKPVVELKAASALERLIVLCDSTITVVDMVTLEPVPTGGNKLKGVT
AFCINENPVTGDPFCVEMAVVSARKRAVQICLVHEDRVQVLKEVTTPEQPCALSLDGYFI
CLALSTQYMILNYSTAASQDLFPYDCEERKPIVKRIGREEFLLAAPGGLGMFANAEGISQ
RAPVSWSENVIAASVCFPYVVALDEGFVTVHSMLDQQLKQTLPFRDGHLLQDFEGKVVLA
STKAVYILVPLPLERQIQDLLASHRVEEALTLTEAAQRNIPKEKYQFLHKRILQQAGFIQ
FGQLQFLEAKEHFRKGQLDVRELISLYPLLLPASSTFTRCHPPLHEFADLNHLTQGDKEK
VQRFKRFLISYLHEVRSFDSANGFREDVDTALLKLYAETGHDSLLDLLASDNACLLADCA
PWLEKHLKYFALGLLYHYNGQDSAALQMWVKIVKGDLQDSTRPDLFEYVVDFLSFCSNLD
LVWRHADWALQKDQKIGVQIFTKRPDSEGKRGQLNPDDVIGYLQKHNKALVLYLEHLVLV
KRLQKEKYHTHLAVLYADRVLGLISRPSVTEEQLSAARQKLQQLLKESSLYRVQLLLNKL
QDHELLLPERATLHGKLEEHGKALHILVHQLKDSPAAEEYCSWASGSQDQAYRQNLFHQL
LRVYLDPDVPGGPQTVAAVDLLNRHANVFDAVRVLTLLPEEWSLPLLRPFLCGALRASVH
ARCTSRVAVGLAHAENLQLKHDRLKYRGGPILVSEKKGCQLCHNTFSEPDCACLPGGTPV
HIHCVAKKALVVPVERQQENAHHSNHT
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgaaagctttcgagcttgttcccgccgtggagcgggaacaggtgatgggcgac
aaggtgcgaattaacatcgaatgcattgaatgctgcggtaaacacctgtatttgggcacc
aacgactgcttcatacatcacttcctactagaggagcacacaacagccaagggcatgctg
gcatacaacgcccataagctcctacataaattcctgggcttaaaaaagccggtggtggag
ctgaaagctgcctctgctttagaacgtctcattgttctttgtgattcaaccatcactgtt
gtggacatggttacccttgaacctgtgcccactggaggaaataaactgaaaggtgtgact
gcgttttgtattaatgagaacccggtgacgggagacccgttctgcgtagaaatggcagtg
gtgtcggcacgcaaacgggctgtccagatctgtttggtccatgaggaccgggtacaagtg
ttaaaggaagtaaccacaccggagcagccctgcgccctgagcctggatgggtactttatc
tgcctagccctgtccacacagtatatgattctgaactacagcacggcagcatctcaggat
cttttcccctacgactgtgaagaaaggaaacctatcgttaaaaggatcggccgggaagag
tttctactggctgcccccggggggcttgggatgtttgctaacgcggagggcatatctcag
cgagcaccggtgagctggtcagagaacgtgatcgcggcgtctgtgtgctttccatatgtg
gtcgcgctggacgaaggttttgtgaccgttcacagcatgttggaccagcagctcaaacag
acgctccctttcagagatggacacctactgcaagatttcgaaggtaaggtggtgttggcc
tctacaaaggcagtgtatatactggttcctctccctctggaacgtcagatccaagacctg
ttggcgagccatcgagtcgaggaggccctgactcttacagaggccgcgcagagaaacatt
cccaaggaaaagtatcagtttttgcacaaaagaattctccagcaagcaggattcatccaa
tttggccagcttcaatttttagaagcaaaagaacattttaggaaaggacagctggacgta
cgagaactgatctccctgtatcctctcctcctgcctgcctcttccactttcacgcggtgc
catcctccgcttcacgaattcgccgatctaaaccacctaacgcagggtgacaaggagaaa
gttcagcgcttcaaacgcttcctcatcagctacttgcacgaggtgcgcagcttcgacagt
gctaacggtttccgagaagatgtggacacggcgctgttgaaactctatgcggagaccggt
catgacagtctactggacttattggcctcagacaatgcttgccttctggcagactgcgcc
ccctggctggagaaacatctcaagtattttgctcttgggcttctgtatcactacaatggc
caagattctgctgctttacagatgtgggttaagattgtcaagggggatctccaggactca
acacgaccagatctctttgagtatgtcgtagactttcttagtttctgttctaaccttgac
cttgtgtggcggcatgcagattgggcactacagaaagatcagaagattggtgtccagata
ttcaccaaaaggcctgactctgaagggaagagggggcagctaaatccagatgatgtgatt
gggtacttgcagaagcacaataaagcccttgtgctttacctggaacacctggtattagtg
aagagattgcagaaagagaagtatcacacacatctggctgtgctgtatgcagacagagtg
ctaggcctgatctcgagaccatccgtcaccgaggaacaactgtctgctgcccgccagaaa
ctacaacagttactaaaggagtccagtctgtacagagtccagttattattaaataaactt
caggaccacgagctgctactacctgagcgcgctacactacacggaaagttggaggaacat
ggtaaagccttgcacattctggtgcaccagctgaaagactcgcctgcagctgaggaatac
tgctcctgggcatctggatctcaggaccaggcataccgtcagaaccttttccaccaactc
ctgagggtttatctggacccagatgtaccgggaggaccacaaaccgtagctgctgtagac
ttgcttaaccggcacgctaacgtttttgatgcggtgcgggtgttgaccctcctcccggag
gagtggtctttaccgctgctccgcccttttctttgtggggcactgagggccagcgtgcac
gcacggtgtacttcccgggttgcagtggggctggcccatgcagaaaacctccagcttaag
catgacaggctgaagtatcgaggtggcccaatattagtgtctgaaaagaagggatgccag
ctgtgccacaatacctttagtgagccagactgtgcctgcttgcccggcggaacacctgtt
cacattcactgtgtcgccaagaaagccctggtcgtacctgtagagcggcagcaagagaat
gcccaccacagcaaccacacatga
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