Triplophysa rosa: 130557576
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Entry
130557576 CDS
T09216
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130557576 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130557576 (cnot3a)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130557576 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130557576 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
130557576
NCBI-ProteinID:
XP_057195440
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Position
LG8:complement(23144790..23152427)
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AA seq
886 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQKE
KEETEQWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRLIERHRYHI
RMLETILRMLDNDSIQVESIHKIKDDVEYYIDSSQDPDFEENEFLYDDLDLEDIPATLMA
TSPQGQMEDDMFLQSSSTPTSTTSSSPIPPSPGTGTTENSEDKRGRSTDSEVSQSPVKNG
NTSLSSFSSSASSGSSSSSSSLVSMATVVGGCTAVSGGSSLLGSFSSAVQQHPPQQQTQV
KLSSSSAPSNNTPSPPSHPTLPTSTYSSLPSSSTPGLITSSSQSSADSGGSSHGLGLGLG
KGGVTVTSSSQMPSLGMTGLSVSLNTMAGLLSGSTPAPYAQAAAGGTASSASSGPVGNSS
GSTSISVTSGGASSGATSNGTGTGGALGLLGSNPGHGTLSGGILNLVPGQSSAQVPVSPV
GAAPGGGTSEGGLGGNGGSAVGSGGVGTNVAPARPPSGLKQNGATSYSAVVADNTPDSSL
SSGSQSQNSHSSSSSSSSNQNLDNGPSLLSSITLPPSSPSPAFTDSSPGGGSLLNGPHSY
TPNTEAIKAPEPPSSLKAMAERAALGLALDGEIPSLHLTDRDLFSGSSAPPGPTTAPQPA
VSEVNLPPSLGACPLGPTPLTKEQLYQQAMQEAAWTHMPHPSDSERIRQYLMRNPCPTPP
FHHQVPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWRFHTKYMMWFQ
RHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaacttcaaggtgaaatagatcgatgtttgaaaaaagtcgctgaa
ggcgtggaacagtttgaagacatttggaaaaagcttcacaatgcagcgaatgccaatcag
aaggagaagtatgaggcagatctcaagaaagagattaaaaagctccagcggctacgagac
cagattaaaacgtgggtggcgtccaatgagatcaaagacaaacgacagctagtggataac
cgcaagctaattgaaacgcaaatggaacgtttcaaggtggttgaaagagaaaccaagaca
aaggcctattctaaagaggggctgggcttggcccagaaagtggacccagcacagaaggaa
aaggaggaaacggaacagtggctcacgaatacaatagacactttaaacatgcaggtggac
cagtttgaaagcgaagtcgagtcgctgtctgttcaaactcgaaagaagaaaggagacaag
gagaagcaggatcggatcgaggagctaaagaggttaattgagaggcaccggtatcacatt
agaatgctggagaccattttgaggatgttggacaatgattcgattcaggtggaatctatt
cataagatcaaagatgatgtggagtactacattgactcttcacaagacccggactttgag
gagaacgagttcctctatgatgacttagacttggaagatataccggcaaccttgatggca
acgtctcctcagggccaaatggaagatgacatgttccttcagtccagcagcaccccaacc
tccaccacttcctcttctcctatccctccatctccaggcactggcaccacggagaattcg
gaagataaaagaggtcgatcgacagacagtgaagtcagtcagtctcctgtgaagaacggc
aacacatctctctcgtccttctcctcgtccgcctcctcaggctcctcctcctcctcctct
tctctggtctccatggctactgttgtcgggggctgcacagcggtctccggaggaagcagc
ctgctgggaagttttagcagtgcagtacagcagcatcctcctcaacaacaaacacaggtc
aaactctcctcgtcatccgcaccctcaaacaacacgccgagcccgcccagccaccccaca
ctacctacctctacttattcctcactgcccagttccagcacacctggcctgattacttcc
agctcccagtcttcggcagattcagggggctccagtcacggattggggttaggccttgga
aaaggcggcgtgacggtgaccagcagcagtcagatgccaagtttgggtatgacagggttg
tctgtttcgctcaacacaatggcagggcttctctcaggctctaccccggccccgtacgcc
caggcggctgcgggtggaacggcgagtagtgcctccagtggtccagtggggaatagcagc
ggtagtactagcatatctgtgacaagcggcggagcgagctcaggtgcgaccagtaacggt
acgggtacagggggagctttgggcctgttagggtccaatcctggtcatggaactctaagc
ggagggattttgaacctggtacccgggcagtcgtctgcgcaggtaccggtgagcccggtg
ggcgcagcacctggaggaggaaccagcgagggtgggctgggcggtaatggaggcagcgcg
gtgggaagtggaggagtggggacgaatgtagcacctgcaagacccccaagcggcctgaaa
caaaatggagcaaccagttacagtgcggtggttgcagacaacacaccagactcctccctc
agcagtggcagccaatcacaaaacagccattcctcctcctcaagctcgtcatcaaatcaa
aatctggataatggtccaagtttattgagttctatcactctacccccctcctccccatca
cctgctttcactgacagctcacctggtggtgggagtctgttaaatggcccacactcctac
acacccaacacagaagctatcaaggctcctgaaccaccaagctctttgaaagcaatggca
gagagagcagcactaggattggcactggacggagaaatcccatcattacacctcacagat
cgagatctgttctcgggatcctcagccccacctggtcccacaacggccccccagcctgcg
gtttcagaagtcaaccttccaccatctttaggggcgtgtccgttaggccccacccctctc
actaaagagcagctgtaccaacaggccatgcaggaggcagcatggacacacatgccccac
ccgtcagactcggagagaatcaggcaatacctgatgagaaatccttgccctacaccacca
ttccaccaccaggtgcccccacaccattcggactctattgagttctaccagagattgtcc
acagagactctcttcttcatattctactaccttgagggcacaaaggcacagtatctgtca
gcaaaagcactgaagaagcaatcgtggaggttccacacgaagtacatgatgtggtttcag
aggcacgaggaacccaagaccatcactgatgaatttgaacagggcacgtacatttacttt
gactatgaaaagtggggccagagaaaaaaggaaggatttactttcgagtacagataccta
gaggacagagatttacagtga
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