Triplophysa rosa: 130557967
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Entry
130557967 CDS
T09216
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
tros
Triplophysa rosa
Pathway
tros03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
130557967 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tros03400
]
130557967 (rad54b)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
130557967 (rad54b)
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
AAA_34
Motif
Other DBs
NCBI-GeneID:
130557967
NCBI-ProteinID:
XP_057196114
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Position
LG8:20890500..20903677
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AA seq
903 aa
AA seq
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MRRSGAPSQLRGNATKKPRFMPPGPAQNDHLSRVELGPSPPSTPALGNVLLNKVQVCLSS
ADAPAGSKALARVLSAVPQGESKENSNRSSSDFSETNQSDKDTVQPNTQANSTSTVRYYS
VMWCKASSRKHKRWEGDAVLVAKGRSVVLKDMEGRDIGRGSGYKASELESLCEGQTLMVG
GKQIEVMGVISNEDYAKGRCFKDASVETSAETVVKAAVYRPLAKSFTRPAFKGGAIQDSH
SEGAPCKPRHDPNSPGALVMPRPSTDHQWLHNKSGSPLVDVVVDPHLTNHLRPHQREGVV
FLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQGPYGGRPVLKRALVVCPGS
LVKNWAAEFNKWLGRERISVYTVDQDHRVEDFVSSPLCSVMVISYEMLLRSVDRLKELDF
GVLVCDEGHRLKNSNIKTSGALTALSCERLLILTGTPVQNDLQEFYSIIEFVNPGILGTS
AAYRKIYEEPILRSRQPTCTEEERCIGEERAAELFRLTGVFTLRRTQEIINKYLSERIEW
TVFCKPTELQLRLYGVLLATRPIRASFSSSGTHAYTHSPHLACINALKKLCNHPGLLYNT
LQEKPAEMFEDGVMELFPQGYSTGAFSTADSGKLLVLTDLLSAIQQVNNKDRVVLVSNYT
QTLDLLQNVCDHIGYKWCRLDGQTPVAQRQRIVDSFNSPHSSNFLLLLSSKAGGVGLNLI
GASHLVLYDIDWNPANDIQAMARVWRDGQKKTVHIYRLLTTGSIEEKIYQRQVSKQGLSG
TVVDLIKKGEHISFSVEELRDLFTFDSNTSCLTHDLLDCQCSGDGNTPSVVKEVSEETGR
ACQLGRHANSAAAFPQRVSMSELMHWRHFAGTVQSYEDIYLNHACNHITFAFQSTTSKSQ
PTV
NT seq
2712 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaggtctggagctccgagtcaactccgcggcaatgctacaaagaaaccccggttt
atgcctccgggtccggcgcagaatgatcacttatcgagggttgaattgggaccatcaccg
ccatccacacctgctttagggaatgtgctgctcaataaggtccaggtgtgtttgagtagt
gcagatgctccagcaggcagtaaggctttagccagagtcttgagtgctgttcctcaaggg
gaaagtaaggaaaatagtaacaggtcttcatctgacttttctgaaacaaatcaatcagac
aaagacacagtacagccgaacacgcaagccaactctacgtctactgtgcgctactacagt
gtaatgtggtgcaaggcatcatcaagaaagcacaagcgctgggaaggtgacgctgtgctg
gtcgccaaggggcggagtgttgtgctcaaagacatggaggggcgggacattggacgagga
tcaggctacaaagcctctgagctggagagtctgtgtgagggtcagactcttatggtggga
gggaagcaaattgaggtaatgggggtcatttccaatgaggactacgccaagggccgttgt
tttaaagacgcttccgttgagacttcagcagagacagtcgtgaaggctgctgtatatcga
ccgctggccaaatcctttacaaggccagcgtttaaaggaggagcgattcaagattcccat
tctgagggagccccctgtaaacccagacatgaccccaattcaccaggagctcttgtgatg
ccacgaccatcaaccgatcaccagtggctacataataaatctggatctccattggtggat
gtggtcgtggaccctcacctgaccaatcatcttcggccacatcagagagagggcgtggtc
tttctttatgaatgcttaatgggaatgaggttggctggtcgctgtggggctattcttgca
gatgagatggggcttgggaagaccctgcagtgtgtctgtgtgctgtggacactattgaga
cagggtccctacggtggacggcctgtgcttaagagagcgcttgtggtgtgtcctgggagt
ttggtcaagaactgggccgctgagtttaacaagtggctcgggagagagaggatcagtgtt
tacacggtggaccaggatcaccgtgtggaggatttcgtgtcgtcccctctttgctctgtc
atggtgatcagttatgagatgttgctgcgctcggtggacagattgaaagagttggacttt
ggagtgctcgtctgtgatgaaggtcatcgactcaaaaacagcaacatcaaaacatccggc
gcactcactgctctttcctgtgaacgccttcttatattaacagggactcctgtgcagaat
gaccttcaggagttttattccatcatagaatttgtaaatccaggaattctgggaacatct
gcagcctacaggaagatttacgaagagccaattttgagatctcgccagcccacctgcacg
gaggaggaaaggtgtattggagaggagcgtgccgctgagctcttccgtctaacaggcgtg
tttaccttgcgacgcacgcaggagatcattaataagtacttgtcggagcggatcgagtgg
actgtcttttgcaaacccactgagctgcagctgcgtctttatggagtccttctggccaca
cgacccatcagagcctctttctccagcagcggcacacacgcatacacgcacagcccacac
ctcgcatgcatcaatgctctgaagaaactctgcaatcaccccgggctgctctataacact
ctacaggaaaagccggctgagatgtttgaggatggagtgatggagctgttccctcagggc
tactccacaggtgccttcagtaccgctgactctggaaagcttctggtgctaacagacctg
ctgtctgcaatacaacaagtcaataacaaagacagggttgttttggtgtccaactataca
caaacgctcgacttgctgcagaatgtctgtgatcacattggctataaatggtgtcggctt
gatggacagacccctgttgcccagcgacaacgaattgttgattctttcaacagcccgcac
tcctccaacttcctgttgctactcagctctaaagctggaggggtggggcttaacctcatt
ggtgcatcccatcttgttttatatgatatagactggaacccagccaatgacatacaggct
atggcacgagtgtggcgtgatggacagaagaaaacagttcacatctacaggttacttaca
acaggttccattgaagagaagatttatcagaggcaggtgagtaaacagggactttctggg
acagtggtggacttgatcaaaaagggagagcatattagcttttctgtggaagagctgcgg
gatcttttcacttttgactcgaacacctcctgcctcactcacgacctactggactgccag
tgttctggagatggaaacacaccaagtgttgtgaaggaggtgagtgaggagacaggaagg
gcatgtcagctcggtcgccatgccaacagcgcagcagcgtttccacagcgtgtcagcatg
tctgagcttatgcactggaggcattttgcaggaaccgtccaatcatacgaggacatttac
ttaaatcatgcttgtaaccacattacatttgcctttcagagtaccacttcaaaatcccaa
cccacagtataa
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