Triplophysa rosa: 130558281
Help
Entry
130558281 CDS
T09216
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 isoform X1
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tros
Triplophysa rosa
Pathway
tros03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130558281 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tros03041
]
130558281 (dhx38)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130558281 (dhx38)
Spliceosome [BR:
tros03041
]
Complex C
Other components
Step II factors
130558281 (dhx38)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
nSTAND3
nSTAND_NTPase5
Toxin_trans_Wo
T2SSE
AAA_16
Flavi_DEAD
ATPase_2
PhoH
Sigma54_activ_2
AAA_7
ResIII
Motif
Other DBs
NCBI-GeneID:
130558281
NCBI-ProteinID:
XP_057196608
LinkDB
All DBs
Position
LG1:34139214..34155139
Genome browser
AA seq
1292 aa
AA seq
DB search
MLGLQWRLPVHIVDVCRSAVHDRIVTAEYVAEMEDDASLHRLEGSDPSVQVGGLIVKKKS
ASSEPHVFRAPAPRTSLLGLDLLAAQKRKEREGKDRQDDQPKKSKVSSYKDWEEGKSDSG
SDDEDQEDSDNSKGKKERKYRVTGSETPSNTGGVSEEFRQKHQQREKDRREHGVYASSKE
DKSRDRDRNRDRDQDRHHDRDRDKRKDRDERESSRSRGSSSSRSERGDGSVRSERSQRDF
GSERLSRGGRRDEPESPRNRSKDVPTPSRSSWDEDDSGYNSSRHSHWESPSPSPSHREYD
RSERSHRSGRDSERRDKSVRAQYPADTPLPTPSYKYNEWANDRKHLGSTPRLSRGKGDKR
EDGDNGILFDNEEEKEQWEEDQKQADRDWYMMDEGYDEFHNPLTSSSEEYVKKREQILQK
QTQKRISAQKRQINEDNERWETNRMLTSGVVQRLEVDEDFEEDNAAKVHLLVHNLVPPFL
DGRIVFTKQPEPVIPVKDATSDMAIISRKGSQLVRRHREQKERKKAQHKHWELAGTKLGD
IMGIKKTEDGAAEGKPVGEDGAVDYKADQKFADHMKDKNEASSEFAKKKTLLEQRQYLPI
FAVRQQLLNIIRDNNIVVVVGETGSGKTTQLTQYLHEDGYTSYGMVGCTQPRRVAAMSVA
KRVSEEINSNLGEEVGYAIRFEDCTSEKTVIKYMTDGILLRESLRESDLDHYSAVIMDEA
HERSLNTDVLFGLLREVVSRRSDLKLIVTSATMDSDKFASFFGNVPVFHIPGRTFPVDIL
FSKTPQEDYVEAAVKQALQIHLSGMSGDILIFMPGQEDIEVTSDQIVERLEDLENPPPLA
VLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVVDSGYCKMKVFNPR
IGMDALQVYPISQANANQRSGRAGRTGPGQCYRLYTQSAYKNEMLTTTIPEIQRTNLANV
VLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLWILGALDNTGALTPTGRLMVEFPLDPA
LSKMLIVSCDMSCSADILIIVSMLSVPSIFYRPKGREEESDQVREKFSVPESDHLTYLNV
YLQWKNNNYSSIWCNDHFIHTKAMRKVREVRAQLKDIMVQQKINLISSGSDWDVIRKCIC
AAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSALFGMGYTPDYIIYHELVMTTKEYMQCVT
AVDGEWLAELGPMFYSIKQAGKTRQENRRRAKEEITNMEEEMSLAQKQIIARKEEQERKN
NFGSTRSITICTPGRREDAPMTPKRTPSRFGL
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atgctgggattgcaatggcgccttcctgtacacattgttgacgtttgccgctcagctgtt
catgacagaatagttacagcggaatacgttgctgagatggaagatgatgcctcattgcat
cgacttgaaggcagtgaccccagcgtccaggtcgggggtctcattgtgaagaagaagagt
gcttcatcagaaccacatgtgttcagagctccagctcctcgcacctcactcctgggtctg
gatctactagctgcccagaaacgcaaggagcgagaggggaaggacaggcaggacgatcag
cccaaaaaatctaaagtgtcatcatacaaggactgggaggagggaaaaagtgattctggg
tctgatgacgaggatcaggaggatagtgacaacagtaaagggaagaaagaaaggaagtac
cgtgtaactggttcagaaacgccctcaaacacaggaggggtgagtgaggagttccgacag
aaacatcagcagagggagaaagacagacgtgaacatggggtctatgcatcttccaaagag
gacaagagcagagacagagaccggaatcgagacagagatcaagatcgccaccatgaccga
gacagagataagagaaaagacagagatgagcgtgaaagcagtcgcagtcgagggtccagc
agcagtcgctctgagcgtggtgatgggagcgttaggagtgagcgatcccagagggacttc
gggtcagagcgtctcagccgcggtgggcggcgagatgagcccgaatcgcctcgtaacaga
tccaaagacgtgcccactccatcacgctccagctgggatgaagatgatagtggatataac
agctcacgccactcccactgggagagcccatctccctccccatcccacagagagtacgac
cgctcggagcgcagccatcgctctggccgtgatagcgagaggagggacaagtcagttaga
gctcaatatccagcagatacccctctaccaactccctcatacaagtacaacgagtgggcc
aatgacaggaaacatctgggctccacccctcgcctgtctcgagggaaaggagataaaaga
gaggacggtgacaatggcatcttatttgataatgaggaagaaaaggaacagtgggaggaa
gatcaaaagcaagcggatcgagactggtacatgatggatgaaggttacgacgagttccac
aaccctttgacgtccagctcagaagagtatgtgaagaagagggagcagatcctacagaaa
cagacccagaaacgcatctcagcacagaaacggcagattaatgaggataatgaacgctgg
gagaccaaccgcatgctcaccagtggagtagtgcagcgtttggaggtggacgaggacttt
gaggaggacaatgctgccaaagtccacctgcttgtccataaccttgtgccgcccttcctg
gatggaaggattgtgttcactaagcagcctgaaccggtcattccggtgaaagatgcaacg
tcagacatggccatcatctcccggaagggcagtcagcttgtccgacgtcacagagagcag
aaagagaggaaaaaggctcaacataaacattgggagttggccggcactaaactgggtgac
atcatgggcatcaaaaaaacagaggacggtgcagcagagggcaaacctgtaggagaagat
ggagctgtggattacaaagcagatcagaagtttgccgatcacatgaaggacaagaatgaa
gccagcagtgagttcgctaaaaagaaaactctgttagagcagagacagtatctgcccatc
ttcgccgttcgccagcagctgctcaacatcatcagagataacaatattgtggttgtggtg
ggtgagacgggcagcggaaagaccactcaactgacacagtatcttcacgaggacggttac
acgagttacggtatggttggctgcacgcagccacgcagagtggcagccatgagcgtggcc
aaaagagtcagcgaggaaataaacagcaacctgggagaggaggttggttatgctatccga
tttgaagactgcacatcagaaaagactgtaataaaatacatgacggatggtattctattg
agggaatctctgcgggaatcagacctggatcactacagcgctgttatcatggacgaggcc
catgagcgttccctcaacaccgacgtgctgttcggtctgctccgagaggtagtgtctaga
cgctcagacttgaagctcattgtcacgtcggccaccatggactcggacaaatttgcgtcg
ttcttcggaaacgttcctgttttccacattcccggcaggacgttcccagtggatatcttg
ttcagtaagactcctcaggaggactatgtggaggcagccgtgaaacaagccctgcagatt
catctcagcgggatgtcgggcgatatactcatcttcatgcctggtcaggaggacattgag
gtgacgtcagatcagattgtggagcgattggaggatctcgagaatcccccgcctctcgca
gtgctgcccatttactcccagctgccctcagacctccaggccaagatcttccagaaggct
ccagatggagtgaggaaatgcatagttgctacaaacattgcggagacgtctttgacggtg
gacggcatcatgtttgtggtggattcaggttactgcaaaatgaaggtgttcaatccacgc
atcggcatggatgcactgcaggtgtaccccatcagtcaggccaatgccaaccagcggtca
ggaagagctgggaggacagggcccggacagtgttacaggttatacacgcagagcgcttac
aagaatgagatgctcaccaccactataccagaaatccagagaactaacttggccaacgtc
gtgctgctgctgaagtctctaggagtgcaagaccttctgctcttccacttcatggaccct
ccacccgaagacaacatgctgaactccatgtaccagctgtggattctgggggcgcttgat
aatacaggtgccctgacacccaccgggcggctcatggtggagtttcctctggatccggct
ctgtcgaagatgctcattgtgtcatgtgacatgagctgcagtgctgacatcctcatcatc
gtgtccatgttgtctgtaccatccatcttctacagaccaaagggtcgtgaggaggaaagt
gaccaggtgagagagaagttctctgtgcctgagagcgatcacttgacctaccttaatgtt
tacctgcagtggaagaacaacaattactccagcatctggtgtaatgatcacttcattcac
accaaagccatgcgtaaggtgcgtgaggtgcgagctcagctcaaagacatcatggtgcag
cagaaaattaatctgatctcctccggctcagactgggatgtgatcaggaagtgcatctgt
gctgcgtacttccaccaagctgctaaattaaagggaataggggagtatgtgaacgtgaga
accggtatgccgtgccatctacaccccacaagtgcactcttcgggatgggttacacccca
gattacatcatctaccacgagctggtcatgaccactaaggaatacatgcagtgtgtgaca
gcagtggacggcgagtggctggctgaactcgggcccatgttttacagcatcaaacaagca
gggaagaccagacaggagaaccgacgcagagccaaggaggagatcaccaacatggaggag
gagatgtccctggcgcaaaagcagatcatagcacgcaaagaggagcaggagaggaagaac
aacttcggcagcacccgatcaataacgatctgcaccccaggacggagagaggacgcaccc
atgacaccaaaacgaacaccttcacgatttggcttgtaa
DBGET
integrated database retrieval system
