Triplophysa rosa: 130558283
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Entry
130558283 CDS
T09216
Symbol
ddx61
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130558283 (ddx61)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130558283 (ddx61)
03036 Chromosome and associated proteins [BR:
tros03036
]
130558283 (ddx61)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130558283 (ddx61)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
130558283 (ddx61)
mRNA degradation factors
5'-3' decay
Decapping complex
130558283 (ddx61)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Gene silencing
piRNA pathway
130558283 (ddx61)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
130558283
NCBI-ProteinID:
XP_057196609
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All DBs
Position
LG8:complement(20494084..20502436)
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AA seq
483 aa
AA seq
DB search
MATARTEIPASVMAMTKQNGQSKPMTLQSGSLTSSTQSGKAPVVPLKGSSIPQSSGGIRF
GDDWKKCLLLPPKDTRVKTTDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYVQAIVLVPTRELALQVSQISINMS
KHIGGVKVMATTGGTNLRDDIMRLDEIVHVIIATPGRILDLLRKGVAKVDKAQMIVMDEA
DKLLSQDFVVLVEDIISFLPKNRQVLLYSATFPISVQKFMTKHLQKPYEINLMDELTLKG
ITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRY
GHLGLAINLITAEDRFNLKGIEDQLITDIKPIPSSIDKSLYVAEFHSIHPDEEEAAQKAA
ELN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggctacagcaagaacagagatccctgcttcagtcatggcaatgaccaaacaaaacgga
cagtctaagcccatgaccctccagtcagggtcactcacttcctcaacacaatcaggaaaa
gcacctgttgtgcctctgaaaggaagcagtataccccaaagcagtggtggtatcaggttt
ggagatgactggaagaagtgcctgctgcttccaccgaaagacacgagagtgaaaaccaca
gatgtgactgcaaccaaggggaatgagtttgaggattactgccttaagcgtgaactgcta
atgggtatctttgagatgggctgggagaagccttcccctatccaggaggagagcattccc
attgccttgtcaggaagggacattctcgcccgagctaaaaatggcacagggaaaagcgga
gcctacctcatccccctcttggagaggattgatctgaagaaagactacgttcaagccata
gtgttggtgccaactcgtgagttggctctgcaggtgagccagataagtatcaacatgagc
aagcatattggtggcgtcaaggttatggctacgacaggtggtaccaacctgagggatgac
atcatgcgtcttgatgaaattgttcatgtaataattgctaccccaggcagaatccttgat
ttgttgaggaaaggtgtggccaaagttgacaaagctcagatgattgtgatggatgaggct
gataagttgctttctcaagactttgtggtgcttgttgaggacatcatcagctttctgccc
aaaaaccgtcaagttcttctctattctgccactttccccatcagtgtgcagaagttcatg
accaaacatctacaaaagccatatgaaatcaatctaatggatgagctgaccctgaaaggc
atcactcagtactatgcctatgtaaccgaaaggcagaaagtgcactgtctcaacacactg
ttctccaggctccaaatcaaccaatcaatcatcttctgtaactccacccaaagagtggaa
ctccttgccaagaaaatcactcagcttggctattcctgcttttacatccatgccaagatg
atgcaggaatacagaaaccgggtgttccatgacttcaggaatgggttgtgtaggaacctg
gtctgcacagatcttttcacgagaggaattgacatccaggctgtcaatgtagtcatcaac
tttgactttcccaaaaatgcagagacgtacttgcaccgcattggcagatcaggcaggtat
ggtcacctgggtctggctattaacctgatcaccgcagaagatcgtttcaacctgaagggc
attgaggaccagctgatcactgacatcaagcccattcccagcagcattgacaagagtctg
tatgtggcagaatttcactccatacatccagatgaggaggaagccgctcaaaaagcagca
gagcttaattaa
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