Triplophysa rosa: 130558422
Help
Entry
130558422 CDS
T09216
Symbol
acana
Name
(RefSeq) aggrecan core protein isoform X1
KO
K06792
aggrecan 1
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tros00535
]
130558422 (acana)
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130558422 (acana)
04091 Lectins [BR:
tros04091
]
130558422 (acana)
Proteoglycans [BR:
tros00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
130558422 (acana)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
130558422 (acana)
Lectins [BR:
tros04091
]
C-Type lectins
Lecticans
130558422 (acana)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
Sushi
V-set
EGF
hEGF
EGF_TEN
EGF_3
Ig_CD22
Motif
Other DBs
NCBI-GeneID:
130558422
NCBI-ProteinID:
XP_057196782
LinkDB
All DBs
Position
LG1:28224749..28240663
Genome browser
AA seq
1501 aa
AA seq
DB search
MAMFLLFLSMCFWVSSATVPFYDYVYTEPESTLSVSIPNELPLQPLMGDTLILPCYFRDN
TVNDPGAPTIAPLSHRIKWSLVTKDKTTTILVASEGIVNVTKQYMDRVTLVGYPTTPTDA
SIKITELHSNDSGVYRCEVVHGIEDNHDIVHVQVQGIVFHYRAITTRYTLTFEKAKAACI
QNSAVIATPEQLQAAYDEGFHQCDAGWLADQTVRYPIHNPREACYGDKYEFPGVRTYGVR
DVNETYDVYCFALTMTGRVFHATSPNKFTFDEAEAACKRRDARLATTGQLYLAWKDGMDV
CNAGWLADRSVRYPINIARPQCGGGLLGVRTVYLFPNQTGYPLPDTCYDAFCYSEKDEEG
SGFPDIFPGSGSGVLSVDTITEGPQVFLKPTSTKSELQGEVITHKPSVTTSVNPSYSIID
DTLLPLLPPPSSTDLGSELSNMTEAVMSDTGVVFHYRASSIRYAYNFVEAQLACQSIGAV
IASPQQLQAAYEAGFHQCDAGWLLDQTVRYPIVSPREQCSGDLEHLPGVRSYGLRPADEQ
YDVYCYVDKPRGDFFHASSFDGFTYNEAVAYCEGQNASLASTGDLYAAWKQGFDMCRKGW
LLDLSVRYAINKPQQLCGGGKAGVHTVYMFPNQRGFPDLNTKFDAYCLKVDLDVSLNESK
ANITVTEETFNMESFPDLLSPVDLDLFLNESEPNKTVTEETVNVDSLPDLLSPVDLDLFL
NESEPNKTVTEDTVNVKSFPDLLSPVDLDLFLNESEPNKTVTEDTVNVKSFPDLLSPVGT
PITPISGSGSSETSGEVNLSGSGSGDQPSGSSGWSGDLSGSGISGDVSGSGLSGDDSSIL
VTFSGSGAVLSGDGSASGRPQEAGEGDLLTFPFDQSSGLFGLNFSGSGSGSGSGYSFEGS
GSISDFSISSGEISGSGEHSGFSSGSGSSGEFSGFITFSSGIFPSGGSSGISLVDESAIL
LDRQWTQLSTSPSLQEQEFSGSHVDFSGSGHISGSGTSGGFSGMSGDHSGSGSGSVFSGV
TYHGSGFTDLTEQSRNQEASGVLIFGSGEGSGFTSGVYAIESGERSGESASGDITFFINS
VVTELSNKPIQAMELGGGDVEYSGTVSLSSGSGDDQTVFASGQEDEPIPTTGHTLNMSSS
EVPPVEQSLQGPSGLHSDAARPAVPYSEPAGMISNPDTTSATLPSTTESAIPQQTPSVIE
EPTVNAIIASVNPCDPNPCGAAELCSVNDGVAFCHCPLGQHEEECQFEVDVCHSNPCANG
ATCVEVEDTFKCLCLPSYEGDRCEIDVHTCEEGWIKFQGNCYLHFSERETWLYAEQRCRD
LNAHLASINTPEEQAFINSYAQDYQWIGLNDKTVENDFRWSDGTPLQYENWRPNQPDNYF
NSGEDCVVMIWHENGQWNDVPCNYHLPFTCKTGPATCGQPPKVENARMFGNKKDRYQVNS
IIRYQCNERFRQRHPPVIRCMADGEWEKPQVECKAKINTRLQMKSTVHHSHKVSTTLEKH
L
NT seq
4506 nt
NT seq
+upstream
nt +downstream
nt
atggccatgttcttgctctttctgagtatgtgcttctgggtctcctcagccacagtgcct
ttttatgattatgtttacactgagcctgaaagcacattgagtgtcagcatacccaatgag
cttcctctccagcccctgatgggtgacacattaattctgccctgctacttccgggacaac
acggtcaacgaccccggtgcccccaccattgcccctttgtctcaccggatcaaatggagt
ctggtcaccaaagacaagaccacaaccattttagtggcatctgagggaatcgtaaatgtg
accaagcagtatatggacagagtcaccttagtgggataccccacgacgcccacagatgca
agcattaaaatcacagaactccattccaatgactcaggagtgtaccgctgtgaggtcgtg
catggcatagaggacaatcacgatatcgttcatgtccaagttcaaggtattgtttttcac
tatcgtgcaatcaccacaagatacacgctgaccttcgagaaggccaaagcagcctgtatt
caaaacagtgccgtgatcgccaccccggagcaactgcaagcggcttatgatgagggtttt
catcagtgtgatgctggatggcttgcagaccagacagtcaggtatcctattcacaatcct
cgcgaggcttgctatggggacaaatacgaatttccaggagtgaggacatacggagtaaga
gatgtgaatgagacttatgacgtgtactgctttgctctgacaatgacaggaagagtgttc
cacgctacttcccctaacaaattcacttttgatgaggctgaagctgcatgtaaaaggcgg
gatgccaggttagctaccactggacagctttacctggcctggaaggacgggatggacgtt
tgtaacgctggctggttggcagacagaagcgttcgctaccccattaacatcgcccgaccg
cagtgtgggggaggcctgctgggagtgcgcactgtttatctgtttcccaatcagaccggc
tatcccttaccagacacttgctacgatgctttttgctattctgaaaaagatgaagaaggt
tcaggctttcctgacatatttccggggtcaggcagtggagtactgagcgtggacactatt
acagaaggcccccaggtctttttaaagcccacctccactaaaagtgaactacagggagag
gttataacacataaaccctcagtgaccaccagtgtcaacccatcatactctatcatagat
gataccctgctgcctcttttgccacctcccagctccactgatcttgggtcagaactttct
aatatgactgaagctgtcatgtctgatacgggggttgtgtttcattaccgtgcaagctcc
attcgctatgcttataactttgtggaagctcaacttgcgtgtcaaagcatcggtgcggtc
atcgccagcccccagcagctccaggccgcctatgaggctggtttccatcagtgtgatgct
ggctggctcttggatcagactgtcagatatcccattgtgtccccacgcgagcaatgttct
ggtgatttggagcatcttcccggtgtgagatcttacggactacgtcctgccgatgaacaa
tatgatgtgtattgctatgtggacaaaccaagaggggattttttccatgcaagttcattt
gatggatttacttacaatgaagctgtggcctactgcgagggtcagaacgcatccctggcc
tctacaggagacctgtatgctgcctggaagcagggttttgatatgtgccgtaaaggctgg
cttctggacctcagcgtacgttatgccatcaataaaccccagcagctgtgtggcggagga
aaggctggagttcacacagtttacatgtttcccaaccaaagaggctttcctgacctgaac
accaaattcgatgcttattgccttaaggtggatctggatgtgtctctgaatgaaagtaag
gcaaacataaccgtgacagaagagacatttaacatggagtctttccctgatcttctcagt
cctgtggatcttgatttgtttttgaatgaaagtgagccaaacaaaacagtgacagaggag
acagtgaacgtagattctctccctgatcttctcagtcctgtggatctggatttgtttctg
aatgaaagtgagccaaacaaaacagtgacagaggacacagtgaatgtgaagtcttttcct
gatcttctcagtcctgtggatctggatttgtttctgaatgaaagtgaaccaaacaaaaca
gtgacagaggacacagtgaatgtgaagtcttttcctgatcttctcagtcctgtaggtacc
cccatcacccccatctctggatctgggtcatctgagaccagtggtgaagtaaatctgtct
ggaagtggaagtggggatcagccgagtgggtcatctggttggagcggggacctgtctgga
tctggaatcagtggggatgtttcagggtcaggtcttagcggtgatgactcaagtatcctg
gtgacattctcaggaagcggagcagttttgtctggagatggatcagcttcagggagaccc
caggaggctggagaaggtgatctcctcacctttccatttgatcagagctcaggccttttt
ggtttgaacttctctggatccggatctggcagtgggtcaggctatagctttgaaggaagt
ggatctatctcagacttttccatcagctcaggtgagatcagtgggagtggagaacattct
ggtttctcctcaggatcaggttccagcggggagttctcaggattcattactttctcatct
ggaatatttccctctggaggatccagtggcatttcattagttgatgaatctgccatcctg
ctggatagacagtggactcaattgtctacttctccatccttacaagaacaggagttcagc
ggaagccatgtagatttcagcggatcaggacatatctcagggtctgggacgagtgggggt
ttttctgggatgagtggtgatcacagcggctctgggagtggttcagtgttttctggtgtg
acgtatcatggatcgggattcactgatctcacagagcaatctcgtaaccaggaagcttct
ggggttttgatattcggatctggtgagggcagtggatttacatccggagtctatgccatt
gaatcaggagaaagatcaggggaatccgccagcggtgatatcacatttttcatcaatagt
gtggtgactgaactgtccaacaagcccatccaagccatggagctgggaggtggggatgtg
gagtatagtgggactgtcagcctgtcatcaggtagtggagatgaccaaactgtctttgct
agtggacaagaagatgagccgatcccaaccactggacacacattaaatatgagctccagt
gaggttcctccagtagaacaatcgcttcaagggccatcaggcctgcacagtgatgctgcc
agaccagcagtgccatattcagaaccggcagggatgatcagtaatcctgatactacttct
gcaactttaccttctacaacagagtctgccattcctcaacagactccttctgtcattgaa
gaacctactgtgaatgccataattgcttctgttaacccatgtgatccaaacccttgtgga
gctgctgaattatgttcagtgaacgatggggtggccttctgtcattgcccactgggacaa
catgaagaagaatgtcagtttgaggttgatgtttgccattcaaacccttgcgccaatgga
gccacctgtgtggaggtggaggacactttcaaatgcttgtgtctgcccagctacgaagga
gaccgctgtgagattgatgttcacacctgtgaagagggctggattaagtttcagggcaac
tgttacctgcatttttccgagagagagacctggctgtacgcagaacagcgctgtcgtgac
ctaaacgctcacctagctagcataaacactccagaagaacaagccttcattaactcgtat
gcacaagactatcagtggatcggattgaatgataaaactgttgaaaatgacttccgctgg
tcagacggtaccccactgcaatatgagaactggaggcctaaccagcctgacaattatttt
aactctggggaagactgtgttgtgatgatctggcatgaaaatggccaatggaatgacgtg
ccttgcaactaccatctacccttcacgtgtaaaacaggtccagcaacatgtggccaacct
cctaaagtggagaatgccaggatgtttggaaacaagaaggatcgttaccaggtgaattcc
atcattaggtaccaatgcaacgaacgctttagacagcgccacccgcctgtgatccgatgt
atggcagatggagagtgggagaagcctcaagtggaatgcaaagccaaaatcaacaccaga
ctgcaaatgaaatctactgttcatcactcgcataaagttagcacaacattggagaaacat
ctctaa
DBGET
integrated database retrieval system
