Triplophysa rosa: 130558974
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Entry
130558974 CDS
T09216
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tros04121
]
130558974 (zswim8)
Ubiquitin system [BR:
tros04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
130558974 (zswim8)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
130558974
NCBI-ProteinID:
XP_057197744
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All DBs
Position
LG9:14045953..14087968
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AA seq
1916 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEEDIRLYSCLANGS
PDEFQRGEQLYRVRAVKDPLQIGFHLSATVVSPQAGQSKGAYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTHEQIIGWWYSVRTSASHSSASGHTGRSNGQTEVAAHACASMCDEMVVLWRMG
VLDPTMSPQRRLELAAQLKQWHLKVIEIVKRGQHRKSLDKLFQGFKPAVECCYFNWEVAY
PLPGITYCGADKKNASFCWSRAMQHLRTKAGATGDSQDPGTRSGMSEANSAEHKSRSSSH
PPQQEVAVRPKETLVSKRKGVSGVNSTSGGVLVRLGGGVALSLEEGGKGMYKSGSSPSTG
SKTKLTQSNKGSCGSSSGLGGKHPSAKRRTSSEDSSLEPDMAELSLDDGSSLALGAEASN
TFDFLPPPPEMLPSPSPLLREPRKFGSSGASKDRPFETKRAPQSAPDGHTCFSKESSMTA
SVVVVMEKEVEVEADLDENGGDEDPVDDAQPSASTTGKAQQSRIEGDGSGASGGSPGPQA
AEAVAGGDAVGDDDYQAYYLSAASEEGVERGVADSNHEEEPDIFAGIKPLEQEGRMEVLF
ACAEALYAHGYSNEACRLAVELARDLLDNPPDLKVEQPQTKGKKSKVSTTKQTQVATNTL
SKVAFLLTVLSERLELHNLAFNTGMFSLEMQRPPASTKALEVKLAYQESEVVALLKKIPL
GIVEMTSIRDRAEQLRDGNFCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNNEM
PGDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILD
KLLDRESQTHKPQTLSSFYSKPANSSQKSPSKHSTHGTSGATGGVSKHGPSASSAAVQGV
SSGGAAAQQGGLTGGVQSSASGEGVGDNRDQEGAQSSSCEQQSEAAPFKPEGTVPSRLAL
GGRGAYSTRCWGSPVRQKKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWTAASWGRGQ
DSDSISSSSSDSLGSSSSSGSRRAGGGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAH
FYFELAKTVLIKAGGNSSTSIFTQPSASGGHQGPHRNLHLCAFEIGLYALGLHNFVSPNW
LSRTYSSHVSWITGQAMEIGSAALNILVECWDGHLTPPEVASLADRASRARDPNMVRAAA
ELALSCLPHAHALNPNEIQRALVQCKEQDNAMLEKACMAVEEAAKGGGVYPEVLFEVAHQ
WYWLYEQTVGGGSGAHREGSGRCGANGGAGRTPPEGSCGILDNPGVMDSSGVAAVTTTVT
AAAVVPVISVGSTIYQSHALPGSAMAHAPGLHPYTTIQTHLPTVCTSQYLGHPLQHVPRP
AVFPLSGAAFPQGMHPAFIGAQYPFSVATGPHPPMAATAVTFPGVPVPSMTQIAVHPYHA
AEAALPLTTTVAGGIHAGSTIQAIQGASLPGLSSQPASLVSAAFPMEDEQHSQPISQQGL
HYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTEDVKWLLGLAARLGVNHVYQFCVG
AAKGVLSPFVLQEIIMEALQRLNPAHIHAHLRTPAFHQLVQRCQQAYLQYIHHRLIHLTP
ADYDDFVNIIRSARGAFCLTPVGMMQFNDVLQNLKRGKQTKELWQRISLEMATFSP
NT seq
5751 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgttcgccgagtgggaagacggggagaggttctcctttgaagactcggac
cgtttcgaggaggactctctgtgttcattcatatcagaggctgaaagtctttgccagaac
tggagaggatggaggaagcagtctgccggtccaaattcacccactgtgaagattaaagat
ggtcaggtcatccctctggtggagctgtcagccaaacaggtggcatttcatattccgttc
gaggtggtggaaaaggtctatcctcccgttcctgagcagctgcaattgagaattgcatac
tggagcttcccagagaatgaagaggacatcagattatactcatgtctggccaacggcagc
ccggatgagttccagcgcggcgagcagctctatagggtgagagctgtgaaagatcctctg
cagataggtttccacctcagtgccacagtagtgtcgccccaggctggccaatcaaaagga
gcctataatgtggctgttatgtttgaccgctgccgcatcacttcctgcagctgcacctgt
ggagcaggagctaaatggtgcgcccacgtcgttgccctctgcctcttcagaattcacaat
gcatctgcggtgtgtctccgagcacctgtgtcagagtccctgtccagattacaacgggat
caacttcagaagtttgcacagtacctcatcagtgaactcccacaacagatcttaccgaca
gctcagcgtctcctggatgagctcctttcttcccagtctactgctattaacaccgtgtgt
ggagctccggatcctaccgcaggcccttcagcttctgaccagagcacttggtatttagat
gagtccaccctcagtgacaacataaagaaaaccctgcacaagttctgtggcccatcacct
gttgtatttagtgatgtgaactccatgtatctatcatccactgagcctcccgcagccgcg
gaatgggcttgtttgctgagacctctgcgaggaagagagccagagggcatctggaacctt
ctgtccatcgtcagagagatgttcaagaggagggacagtaacgctgctcctcttttagag
atcctcaccgaacagtgtctcacccatgaacagattattggttggtggtacagtgtgagg
acatctgcctctcacagcagtgccagcgggcacacaggccgcagtaatggccagacagag
gtggcagcgcatgcctgtgccagtatgtgtgatgaaatggtggtcttatggagaatggga
gtgttagatccaaccatgagcccacagaggcgtttagaacttgctgcccagctgaagcag
tggcacctaaaagttatagagatagtgaaacgtggacagcatcgcaagtccttggacaaa
ctcttccaaggcttcaaaccagctgtggaatgctgctacttcaactgggaagtcgcctat
ccgttacctggcatcacctattgcggtgcggataagaaaaatgcctcattttgttggtcc
agggcaatgcagcacctccgaactaaagctggggctactggggattctcaagatcctgga
acccgcagcgggatgtctgaagctaattccgccgaacacaagtcacggagcagctcccac
cctccccagcaggaagtggctgtccgacctaaagagaccttggtgagcaagagaaaagga
gtgtcgggggtcaacagcaccagtggtggggtgttggtgcgtctgggcggtggggttgct
ctctctcttgaggagggaggaaaaggcatgtataaatccggctcctctccatcaactggt
agcaaaaccaagctaacacaaagcaacaagggctcgtgtggaagttcaagtggcctcggt
gggaagcaccctagcgctaaacggcgaaccagcagcgaggacagttctctagagcctgat
atggcagagttgagtctggatgatggctccagtctggcacttggggcagaggccagtaac
acttttgatttccttccacctccgcctgagatgctaccttcacccagcccccttcttcgc
gagccacgcaaattcggcagcagcggcgcttcgaaggatcgcccgtttgagactaaacgt
gcaccacaatctgctcctgatggccatacctgcttttcgaaagagagctccatgacggcc
tcggttgtggtagttatggagaaagaggttgaggtagaggcagatctggatgagaatgga
ggagatgaggacccggttgatgatgctcagccctctgcgtcgaccaccggcaaggctcag
caaagccggatagagggagatgggagtggggcttcaggagggtctcctggaccacaggca
gctgaggcggtggctggtggagatgcagtgggtgatgatgactatcaagcatactacctt
agcgctgcatcggaagagggagtggagagaggggttgcggatagcaaccatgaggaagaa
ccggacatctttgctgggattaaacctctggaacaagagggcaggatggaggtgctgttt
gcctgtgctgaggctctttatgctcacggctacagtaatgaggcgtgccgattggctgtc
gaacttgctcgagatcttctggataatccacccgacctcaaggtggagcagccccagaca
aagggtaaaaagagcaaggtgtcaaccactaaacagactcaggtggccacaaacaccctg
tctaaagtagccttcctgctaactgtgctgagtgagagactggagctccataacctggcc
ttcaacactggcatgttctctctggagatgcagagacctcccgcttctactaaagccctt
gaggtaaagctggcatatcaggagtcagaggtggtggctctgctgaagaagattcctctt
gggattgtagaaatgacttccataagggacagagctgagcagctccgtgatggaaacttc
tgcgactatcggcctgttctgcccctcatgcttgctagcttcatatttgatgtgctgtgc
acgcccgtggtgtctcccacgggctctcgacctcctagccgtaaccgtaacaacgagatg
cctggcgacgaggagctgggctttgaggctgctgtagcagctcttggtatgaaaactaca
gttagcgaggcagagcatcctctcctctgtgaggggacacggagagagaaaggagacctg
gctctggcgctgatgatcacgtataaagatgaccaaagcaagttaaaaaagattctcgat
aagctccttgatcgtgagagccagacccataagcctcagactctgagctccttttacagc
aaaccagccaacagcagtcagaagagcccatccaaacattccacccatggtaccagtggt
gccacgggcggagtgtcaaagcacggcccgtcagcatcatcggccgctgtgcagggtgtg
agcagtgggggagcggcggcacagcagggaggtttaacgggtggagttcagagctcagcg
tcaggagaaggagtcggtgacaatagagatcaagagggtgcgcagtcctcctcctgtgag
cagcagagcgaggctgcacccttcaagcctgagggcactgtgcccagccgtctggcgctg
gggggccgcggggcatacagcacacgctgctggggatcacctgtacggcagaagaagaaa
cacacgggcatggcaagcattgacagtagcgctccagagaccacctcagacagctcccct
actctcagtcgacgcccacttcgagggggttggacagctgcttcctgggggagaggacag
gacagtgacagcatcagtagctcttcctccgattcactgggctcgtcatcatccagcggc
tcacgcagagccggaggaggagccagagccaagagtactgacaccagcaggtataaaggc
cgtcggcctgaatgccacgctccacatgtgcccaaccaaccatctgaggcagctgcccat
ttttatttcgagctggccaagactgtgctgattaaagctggaggaaacagctccacctcc
atcttcactcaaccctctgccagcggaggccaccaggggccccaccgcaacctgcatctg
tgtgcctttgagattggcctgtatgccctcggcctgcataatttcgtgtctccaaactgg
ctgtcaagaacttattcgtcacatgtttcgtggattacaggccaagccatggagattgga
agcgctgccctcaacatcctagtggaatgctgggacgggcacctgactcctccagaggtg
gcatcacttgcggaccgtgcatctcgagcacgggaccccaacatggtgcgtgctgcagca
gaactggccttgagctgtctgccgcatgctcacgccctcaaccccaatgagatacagaga
gctctggtccagtgcaaagaacaggataatgcaatgttggagaaggcttgcatggcggtt
gaggaggcagcaaagggaggaggcgtttaccctgaggttttgttcgaggtggcccatcag
tggtactggctgtatgagcaaacagtgggcggtggctcaggtgcccatcgagaaggttct
ggacgctgcggggccaacggtggagcagggagaacgccccccgaaggaagctgcggtatc
ctcgataaccccggagtcatggattcatcaggtgttgctgcagtgaccacgacggtgact
gcagctgccgtagtacccgtcatttctgtcggttccaccatctaccaatcgcacgcgctg
ccgggttcagccatggcgcacgcgccgggcctgcatccgtacaccaccattcaaacgcat
cttcctaccgtctgcacctcgcagtacctgggccacccgcttcagcacgtgccccgtcct
gccgtcttccctctgtctggggctgcattcccacaaggaatgcaccctgccttcatcggc
gctcaatatccattctctgtggccactggccctcatcctcctatggcagcaaccgctgtc
actttccctggagttcctgtgccttccatgactcagattgccgtccacccatatcatgct
gctgaggcagccctgcctcttaccactactgtggcaggagggatacacgcaggctccacc
atccaggccattcagggggcatctcttccaggactctcgtcccagccggcatcactggtc
agcgcggcctttcccatggaagacgagcagcacagccaaccgatcagccagcagggactg
cactatctgcactcggcctacagagtcggaatgctggccttggagatgctgggaaggagg
gcccacaacgatcatcccaacaacttctcccgcagtcccccatacacagaagacgtcaaa
tggctgctgggtcttgctgcacgtctcggcgtgaaccatgtgtaccagttctgcgtgggg
gctgcaaaaggcgttctgagtccgtttgtcctgcaggagatcattatggaggctctgcag
aggttaaacccggcacatatccacgctcacctccgcacccctgccttccatcagctcgtg
cagcgctgccagcaggcctacttacagtatatccaccataggttgatccatctgactccg
gcagactacgacgactttgtgaacatcatccgaagtgctcgcggggcgttttgcctgaca
ccagttggcatgatgcagttcaacgatgtgctgcagaacctgaaaaggggaaaacagact
aaggaactctggcaaaggatctccttggagatggccactttctcaccctga
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integrated database retrieval system
