Triplophysa rosa: 130559100
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Entry
130559100 CDS
T09216
Symbol
pdlim1
Name
(RefSeq) PDZ and LIM domain protein 1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
tros
Triplophysa rosa
Pathway
tros04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
130559100 (pdlim1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tros04990
]
130559100 (pdlim1)
Domain-containing proteins not elsewhere classified [BR:
tros04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
130559100 (pdlim1)
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Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
CASP_C
Motif
Other DBs
NCBI-GeneID:
130559100
NCBI-ProteinID:
XP_057197974
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Position
LG9:complement(15888209..15892792)
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AA seq
322 aa
AA seq
DB search
MPLRVVLQGPGPWGFRLVGGKDFDQPLTISRVTPGSKAAQANLCIGDMILSIDGESTDGM
THLEAQNKIKGCMEEMVLSIDRSDAKMWSPLVTEEGKTNPYKMNLANTEAQEVKHIGSAH
NRSALPFSSGSPRVVTNQYNNPAGLYSNENIKSFNNTVDDVKTSVTSSEPSRNSDASRPS
QPKPPLPAESEVYKMLQENQESQEPPRQSASFKVLQEILETDDSEKPSGFRSVKPPTTKI
GASVGNAEKLSVCDKCGSGIVGMMVKVRDRFRHPECYVCTDCGINLKQKGHFFVEDKIYC
EKHARERVTPPDGYDVVTVFPK
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgccattacgtgttgttttacaaggtcctgggccgtggggattccgtctggtcggaggt
aaagacttcgaccaacctctgactatctcgagggtgaccccaggaagtaaagcagcacag
gccaatctatgcatcggggacatgattctgtccatagatggagagtccacagatggcatg
actcacctggaagctcagaataaaatcaagggctgcatggaggaaatggtgctttccatt
gaccgatcagatgcaaaaatgtggtcccccctggtcacggaagaaggaaagaccaatcca
tacaagatgaatctggccaatacagaagcgcaggaggtgaaacatataggctctgctcat
aacaggagtgccctgccattcagctctggcagtccaagggtggtcaccaaccagtacaat
aaccctgctggcctgtactccaatgagaacataaaaagcttcaacaatactgtagatgat
gtcaagacctctgtcacctccagtgaaccaagtaggaattcagatgcttctagacctagc
cagcctaagcctccattacctgcagaatctgaggtttacaaaatgctgcaggagaatcag
gagtcccaagagccgcctcgccagtctgcctcttttaaagttctgcaagagatcctggaa
actgatgattcagaaaaaccctctggcttcaggagtgtgaaacccccgactacaaaaatt
ggagcttctgtaggaaatgctgaaaaactgtcagtttgtgacaaatgcggatcagggatt
gtgggaatgatggtcaaagttcgagaccgatttcgtcacccagagtgctacgtctgcaca
gactgtgggatcaacctgaaacagaaaggacacttttttgttgaggacaagatttactgt
gagaaacatgctcgtgaacgcgtcactcctccagatggttacgatgttgttactgtcttt
ccaaagtag
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