Triplophysa rosa: 130559367
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Entry
130559367 CDS
T09216
Symbol
hif1aa
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha a isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tros
Triplophysa rosa
Pathway
tros04137
Mitophagy - animal
tros04140
Autophagy - animal
tros04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130559367 (hif1aa)
04137 Mitophagy - animal
130559367 (hif1aa)
04148 Efferocytosis
130559367 (hif1aa)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tros03000
]
130559367 (hif1aa)
Transcription factors [BR:
tros03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130559367 (hif1aa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1
PAS
PAS_9
PAS_4
Hl_ALG44
HLH
Motif
Other DBs
NCBI-GeneID:
130559367
NCBI-ProteinID:
XP_057198366
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Position
LG9:18833358..18846890
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AA seq
686 aa
AA seq
DB search
MDAVAPGKKSRVSSERRKEKSRDAARCRRGKESEVFYELAKELPLPHSVTSNLDKASVMR
LALSYLRLRKLLGTGVLGVETELDSQWNSSVLKALDGFLMVLSVDGDMVYLSENVTKCLG
LPHVDLSGHSVFEFTHPCDHEELREMLAHRIGLSKKGKEHQTDRNFLLRMKCTLTSRGRT
VNVKSASWKVLRCSGHIHIADTLEKVVCEEISLCSTYLVVICESIPHPGNIEAPLDSRTF
LSRHTLDMRFTYCDDRITDLLGFDPGDLLEHSVYEYYHALDSDHMTKTHHNLFVKGQVCS
GQYRLLAKAGGFAWAETQATVIYNNKNNQPQCVVCVNYIFSGIEQPKEILSLQQINSTKI
KQEEVEVNAEVTLVVRKMESKKGDEEKRCLDNIDLQPAVPHENLKGEPERLTVVHSATAC
AALTLDINSTDSATSVLKDIPLYNDVMLPSSSVLLPLSPLSSSTDALCSTLDDADSSTAH
LQPDCFPVPQSSDLLFDSELSDQLKPDQVERLFSMDLDPKTTFNIQPVGLDLDMLAPYIP
MDDDFQLRTPKSLCSSPSLGFELPTSSSIQTSPSVPEALAEPVCSDTSQQNTGTSEQDSS
RVIIQDSDISSKCQTSPKLKRNLEAITLSEAIRLGSVMQVMADIPEKKIKLSDVPPSEGL
HHTTILLLPSGVSPWIPHFNFSFLSL
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
atggatgcggtcgcacctgggaaaaagagcagggtgagttcagagcgaaggaaggagaaa
tctcgggatgcggcgcgttgtcggagaggaaaggagtccgaggtgttttacgagctggcc
aaagaactgcccctcccccacagtgtgacctccaacctggacaaagcttcagtcatgaga
ctcgcgctcagttacctgcgcctgcgtaaactactgggcacaggtgtattgggtgttgaa
actgaattggactctcagtggaacagttcggttctgaaagctctggatgggtttctcatg
gttctgtctgttgatggtgacatggtctacttgtcagagaatgtgaccaagtgtcttggc
cttcctcatgttgaccttagtggacacagtgtgtttgagtttactcatccatgtgatcat
gaggagctcagagaaatgctagctcacaggataggtttatctaagaaagggaaagagcac
caaacagatagaaattttctactgaggatgaaatgtacactgactagcagagggcgtacc
gtcaacgtcaaatctgcctcctggaaggttctgcgctgctcgggccacatccacatagct
gacacacttgagaaggttgtgtgtgaggaaataagtctgtgttcgacttacctggtggtg
atctgtgagtctattcctcacccgggcaacattgaggcaccactggattctagaacattc
ctcagccgccacactttggatatgcgcttcacctactgcgatgataggatcacagatttg
ttgggttttgatccaggggatctactggagcattctgtgtacgagtactatcacgccctg
gattccgatcacatgaccaaaacccaccataacctgtttgtgaagggacaggtatgtagt
gggcaataccgtctgttggctaaagcgggaggctttgcctgggcagaaactcaggccaca
gtgatatataacaataaaaacaaccagccacagtgtgtggtctgtgtcaactacatcttc
agtggtattgaacagcccaaagaaattctgtccctccaacagatcaacagcacaaaaata
aaacaggaagaggtggaagtcaatgcagaagtgaccctggtggtacggaaaatggagagt
aaaaagggcgacgaggaaaaaaggtgtttggacaatattgatctgcagcctgcagttcca
catgagaacctaaagggggagccagagagactgacagttgtacactctgcaacagcatgc
gctgctctcacgctggatatcaacagcacggactcagcgacctctgtgctgaaagacatt
ccgctctacaatgatgtcatgttaccctcatccagtgtcctgctgcccctctcacctctg
tcttcgtccactgatgcactgtgttccacactagatgatgccgactcctcaacagcccat
ctacagcctgactgtttccctgtcccacagtcatctgatctcctcttcgattcagaattg
agcgaccagctaaaaccggatcaagtggagagactcttttccatggatttggatcccaag
acaacctttaatatacagccagtgggtttggatctggatatgttggcaccatacattccc
atggatgatgacttccagctgcggactccaaagtcattgtgttccagcccaagtttagga
ttcgaactgcccacctccagcagcatacaaacttccccttctgtcccagaagcccttgca
gagccagtgtgctcagacacatctcagcagaacactggaacctccgagcaggacagcagc
agagttattattcaagacagtgatatttcttctaaatgtcaaaccagcccaaagcttaag
aggaatcttgaggcaataactctctctgaagcaataagactggggtctgtgatgcaggtt
atggctgatatacctgagaaaaagatcaaactatcagacgtcccaccatcagaagggctc
catcacaccacgatactgctgctgccatctggtgtgtcaccatggataccacacttcaac
ttcagctttttgtcactgtga
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