Triplophysa rosa: 130559560
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Entry
130559560 CDS
T09216
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6 isoform X1
KO
K10841
DNA excision repair protein ERCC-6
Organism
tros
Triplophysa rosa
Pathway
tros03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
130559560 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tros03036
]
130559560 (ercc6)
03400 DNA repair and recombination proteins [BR:
tros03400
]
130559560 (ercc6)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130559560 (ercc6)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
130559560 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SesA
Motif
Other DBs
NCBI-GeneID:
130559560
NCBI-ProteinID:
XP_057198697
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All DBs
Position
LG9:18382137..18397753
Genome browser
AA seq
1375 aa
AA seq
DB search
MPAEGNTDQALPPFSSPVSVQEDNGFSIPRSSKEEPAATCPEGVGAQNSRKSQALLQINR
QEIRSVDQSSQAAELQGLGVDVYDQDVLEQGVLQQVDRAIQEANQAAAKAEAEKEYESVL
DDVRSCTSALKHINKILEQLSPHAASSKDISRKLESVKRQKENKEKQLKKIRAKQKRLQA
FLDGENIQKLEAELLIEDDEEPGPSTLGSMLMPSQESEWEELIRTGHMTPFGSRIPQKQE
KKEPRKVMLSEDSSFDKYLTDQALLAESRKKPILKKPTKKLTTNPKDVKEQKNSILSSKD
KKLQKRMRKLQRTALRAHPKARPKVEKEPTRGKRKSLGEQASDSEASEYVPSDELMDPEE
PERDDEFRVDEDEEYELKPYKKKHQVKTRKAKEEESDEYIPSSSEDEDSQRDGKVKKCKD
DGDIECYRQRIRKWKRQRLREKEAKREAGKEESEESDAEFDEGFKVPGFLWKKLFKYQQT
GVRWMWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLKTRGSNYRYAGLGPTVIVC
PATVMHQWVKEFHTWWPPFRVAVLHDTGSFTSKKEKLIPEIVASHGILITSYSYIRIMQD
YIQKYDWHFVILDEGHKIRNPNAGVTMACKQFRTPHRFILSGSPMQNNLKELWSLFDFVF
PGKLGTLPVFMEQFSVPITMGGYSNASPVQVQTAYKCACVLRDTINPYLLRRMKADVKAN
LCLPDKNEQVLFCRLTEDQRQVYQNFLDSKEVYQILNGDMQVFSGLIALRKMCNHPDLFT
GGPRLLRGIPDDQLTEEEHFGYWKRSGKMIVVESLLRLWFKQGHRVLLFTQSRQMLEILE
VFVKDNGYSYFKMDGTTTIASRQPLITQYNQNKDIFVFLLTTRVGGLGVNLTGANRVVIY
DPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQ
RRFFKSNDVYELFTLSTPDGLQGTETSAIFAGTGSDVHIPKRHKTSHPSQETSGPSQPHS
SSVEEQKTTSLSNNRHAATSFNGHSNNIDRSRLPNNADLPTNDASLANSPQKHREKKKHH
ATTEKNTDEHKRKHKKPKQDARFEGHRISHLVKKRGYKKEDNEEKEENKDERKSDDYVLA
KLFKKSGIHSVMKHDTIMEASNPDYVLVEAEANRVAKDALKALKISRQRCRVPFSRGSTP
ASPAPVKKRFGQKKNTLLSQAPGTTAKASEKCKDANIIKKSGIKKPGSAAHFSGEGAQEE
SASLSSSSLLAMMRARNHISQPQSQDNEEEEESNPAPAVPPAPTEQDELLVDLRNFVAFQ
AQVDGQASTKEILEYFTPRLNSTQTPVFRELLRNICEFHRLPGQEGMWKLKADYR
NT seq
4128 nt
NT seq
+upstream
nt +downstream
nt
atgccagcagaaggaaacacggaccaggcccttcctcccttctccagccctgtcagtgta
caagaagacaatggcttttccatcccaagaagcagtaaggaagagccagcggctacctgt
ccagaaggtgttggagcacaaaactccagaaagtcacaggcgctgctccagatcaaccgt
caggagatccgctcagtggaccagagctctcaagctgctgagcttcagggtttgggagtg
gatgtgtatgaccaggatgttctggagcaaggtgtgttgcagcaggtggacagagctatt
caggaggccaaccaggcagcggccaaagcagaggctgagaaagaatatgaatctgtgttg
gatgatgtcaggtcatgtacaagtgctttgaaacacatcaacaaaatcttggagcagtta
tctccccatgctgcttcgagcaaggacataagtcggaaattagagtctgttaaacggcaa
aaagaaaacaaggagaagcagttaaagaagatccgagccaagcagaagagactgcaggcc
tttcttgatggagagaatatccagaagcttgaggcagaattattgattgaagatgacgaa
gaaccaggtccttccacgctgggcagcatgctcatgccctctcaggagtctgaatgggaa
gagctcatccgcacaggtcacatgacccccttcggttcacggatccctcagaagcaagag
aaaaaggaacctcggaaggttatgctcagcgaggactccagctttgacaagtacctcaca
gatcaggcacttttagctgagagcaggaagaaacccatcttaaagaagcccaccaagaag
ctaacaacaaaccccaaagatgtcaaagagcaaaagaacagtatcttatccagcaaagat
aagaaactccagaagcgtatgcgtaagcttcagaggaccgctctgagggctcaccccaaa
gccaggcccaaggtggagaaagagccaactcgtggcaagaggaaaagtctcggggaacag
gcatcagacagtgaggcctccgagtatgttcctagtgatgaactgatggatcctgaggaa
ccggagagagatgatgagttcagggtggatgaagatgaagaatatgagcttaaaccttac
aagaagaaacaccaggtgaaaaccaggaaggccaaggaggaagagagtgatgagtatatt
cctagcagttcagaggatgaggactctcagagagatggaaaagtgaagaaatgtaaagat
gatggagatatcgagtgttaccggcaaaggattaggaagtggaaaaggcaaagacttcgg
gaaaaagaggcaaaaagagaagctggcaaggaggagtcggaggagagtgacgcagagttt
gatgaaggatttaaagtgcctgggttcctctggaaaaaactcttcaagtatcagcagaca
ggtgtcaggtggatgtgggaactgcactgccagcaggcaggaggcattctgggagacgag
atgggcctgggcaagaccatccagataattgccttcctggcaggcctcagctatagcaaa
ctaaaaacacgtggatccaattacaggtatgccggcctcggcccaacagtaattgtgtgt
ccagccacagtcatgcatcagtgggtgaaagagtttcacacatggtggcctccattccgt
gtggctgttctccacgacacgggctccttcaccagcaaaaaggagaagctcatcccggag
atagtggccagtcacggcatcctcatcacttcctactcgtacatacgcattatgcaggac
tacatccagaagtacgactggcatttcgtcatcctggacgagggccacaaaattaggaac
cctaatgctggggttactatggcgtgcaagcagtttcggacaccacacagattcatcctc
tctggctcacctatgcagaacaacctgaaagaactgtggtcgctctttgactttgtgttc
ccagggaagctggggactctgcctgtcttcatggagcagttctctgtgcccattactatg
ggcggatactcgaacgcatctccagtgcaggtccagacagcctataaatgcgcttgtgtt
cttcgtgacacgattaacccctacctgctgagaagaatgaaggctgatgtgaaagcaaac
ctctgcttacctgacaaaaacgaacaggtcctgttctgcaggttgacagaagatcagcgg
caggtctaccagaacttcttggactccaaagaagtttatcagattctgaatggagacatg
caggtcttctcgggcctcatagctctgaggaagatgtgcaaccacccggacctgttcacc
ggcggcccacgcttgctccggggcatcccggacgatcagctcactgaggaggagcacttt
ggttactggaagcgctcggggaagatgatcgtggtggagtctctactgcgcctgtggttc
aaacagggacacagagttctgcttttcacccaatccagacagatgctggagatcttggag
gtgtttgtgaaagacaacggctactcctatttcaaaatggacggtactaccaccattgca
tccaggcagcctctcatcactcagtacaaccagaacaaggacatttttgtctttctcctg
acaacgagagttggagggctaggcgtcaacctgaccggggccaatagggttgtaatctac
gaccccgactggaaccccagcacagacactcaggcacgtgagcgcgcctggaggattggg
cagaaacagcaggtgactgtttacaggctgttgacagctggaaccattgaagagaagatt
taccacaggcaaatcttcaaacagtttcttaccaatcgagtgctgaaagatcctaaacag
aggcgctttttcaaatctaacgacgtttatgaacttttcacactgagcactcctgacggt
ttgcagggaacagaaaccagtgcgatatttgcaggcacaggctcagacgtgcatattcca
aaaagacataagacctcccatccgtctcaggagacatcaggaccatcacagcctcattcc
tctagcgttgaagaacaaaagaccacatctctgtcgaacaacagacatgctgctacctca
ttcaatggtcactcaaacaatatagacagatctaggttaccaaacaatgctgatcttcca
acaaatgatgccagtttggcaaacagccctcagaaacacagagaaaagaaaaagcaccat
gcaacgacagaaaagaatacagatgaacacaaacgtaagcataaaaaacccaagcaggac
gctagatttgagggccaccgtatttctcatctggtaaagaaaagggggtacaaaaaagaa
gacaatgaagagaaagaggagaataaagatgagagaaagagtgacgattacgtcttagcc
aaactctttaagaaatcgggaatccacagtgtcatgaagcacgacactatcatggaggcg
tcaaacccggactatgtgcttgtggaagccgaagccaacagggttgccaaggatgcgctg
aaagctctaaagatctcgagacagcgttgcagagtgcctttctcaagagggtccacacca
gcaagcccagctccagtcaagaaaaggttcgggcaaaagaaaaacactctactttctcag
gcacctgggacaacggcaaaagcatcagagaaatgcaaggatgcaaatattataaagaag
tcgggaataaagaagccaggatctgctgctcacttcagcggcgaaggagcacaggaggaa
tctgcttctctctcatcctcctctctcctcgctatgatgagggccaggaatcacatcagt
caaccccagagtcaagacaatgaggaagaagaggaaagcaatccggctcctgccgtacct
cccgctcctactgaacaagatgagcttctggtcgatctgaggaactttgtggccttccag
gctcaggtggatggccaggcaagcaccaaggagattctggagtacttcaccccaagactc
aactcaacacagacaccagtgtttagagaactgctaaggaatatctgcgagttccacaga
cttcctgggcaggaagggatgtggaagcttaaagctgactacaggtaa
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