Triplophysa rosa: 130559723
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Entry
130559723 CDS
T09216
Symbol
col17a1b
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
tros
Triplophysa rosa
Pathway
tros04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130559723 (col17a1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
130559723
NCBI-ProteinID:
XP_057198944
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Position
LG9:15410286..15429881
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AA seq
1561 aa
AA seq
DB search
MDDLGQRNYSGGSLGDKGTETRLTSLPPRGFSASSGKGMSSNSGSSSLDKNIITQNSSYF
FSSSGGGSTGGLGSALSDLLTEETSVSISRKAGGSSDGFDSAFGSGSGLRVRSSSTEGTR
RTQDSCVSPLFLEKKSKTTRSSHYDGSSSDNSSPETKRKDYGSSRGRTQSRETEIRTRLQ
SASPSTRWTELDDVKRLLKGSRSASVSPTRSPCTSPLPVPRKATIETSISTKPVIDRKMK
TAHADMMNSEQYDNTFLETDLSSFTWNTSTLPSAVSTGNAAYSFHSNTNNMSTGASLVNS
TSPSSLSVYGFQNNLGVLSSSGANTIPGYGVQKNYSSITNSPVGVSAGVSTSGYGVQKNY
SSSPNSPVGLSTGVSTSGYGVQKNYSSSPNSPVGASTGVSTSGYGVQKNYSASPNSTVGV
STGVSTSGTGTRVLNENMTKKYLTSEKENIPVKRETEELILTKDSGKQFTSSAPNGKAES
YSDVSVKKDVFTTSYSESAPVKSSSGAYYGSTAVATKDKATYAEIHKAEDEDDCTCVGGC
CGPHCCSWWKWLLGFLLGLLLLLGLLFGLIALAEEVKKLKNRVSTLEGISSSMNAHTSRL
SASNDGVHNVNNGGVRSAYENTLDLGSTDFSGNLALQRNIQQTLRAEMQSEAMRDHLMSL
VKAEGGLRGPKGDTGPQGPKGDSGFPGQSGSSGVPGHPGRDGSKGEKGEQGADGPAGFRG
RDGQPGSRGDPGPPGMGEKGERGLPGFPGIAGVHGQKGAAGLQGEQGPRGFSGEPGPKGD
RGPPGIKGDHGDKGDSGIPGVPGSAGRPGPTAEKGAKGSAGPQGPDGEKGQRGETGSIGL
PGIRGPAGPPGDAGLSGTPGLQGPPGIPGNPGQPGAKGEIGAPGRVINAAGSSSVAIPGQ
PGSPGPPGPPGHPGLSGPIGPAGLPGQPGPKGPKGDQGDQGEPGIVVRTSETVSSRRAES
VYGAQNAGVTGPPGPPGPPGRPGDSIQGPPGQPGYGRPGPKGDKGDSGSFVPNSGTFFAG
PPGPPGSPGPKGATGAQGPRGYQGEPGQPGLAGSSGRVITEYGAGQGPPGPPGPPGPPGR
DGRNGEPGIPGTAIFQRDSRGSVAVGPPGVPGPAGPPGPPGAPGHSGGSHSTADYRRYIM
EYMQSDSMRQHLSSIQGPPGPPGASVSVEEVASRVVAYLQRSGISGVSISQGPPGPPGPP
GSITAEYIISLLQRDDVRRYVIGPPGPPGAAGSIATSFNTQEVANYVIRIMREQGIINKA
GPPGPPGPPGLPGLTYSDVTTLIQKSGLSGSIGHPGLPGPPGVQGPPGLPGAPGSSSTVI
SGLKLEDIQLYLQKNGFRGPPGPPGPRGPHGPPGDVTGLVSYSGSSQAQREHIRAELQEY
FNSDAVRRYGLPGPPGPPGQKGERGEPGYNYQNVRSQYHLGTETGEALDYSNVALKVTDY
IKNQGLLQDLTEGYWRGQEQRFQGSPGPPGPPGYSRVFAAYGNVTADLVDFFRIHGAIPG
PPGRQGPRGERGYPGPKGEKGVVGSSGIPGLPGQRGPEGPRGEKGEKGDTQSGRWRRATG
V
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttaggacaaagaaactattcaggaggaagtttaggagacaaaggcactgaa
actagacttacatctctaccaccacgaggattcagtgcatcgtccgggaagggaatgtca
agtaactctggaagttctagcttggacaagaacattataacccaaaacagttcttacttc
ttttcctcttctgggggtgggagtacgggtggattaggatctgctctcagtgaccttctg
acagaggagacctctgtgagtataagcaggaaggcaggtggctcttctgatggttttgat
agtgcgtttggatcgggctctgggctaagggtgagatccagttccactgaaggcacgagg
agaacacaagattcctgcgtctcccctttgtttctagagaagaaaagcaaaaccactcgt
tccagtcattacgatggaagctcaagtgacaattcgtccccagagaccaaaagaaaagac
tacggatcatctagagggaggactcagagcagagagacggaaatcaggacaagactgcag
agtgcatctccatccacaagatggacagagctagatgatgtgaaaaggctactgaaagga
tcacgctctgccagcgtaagccctacaagatctccctgcacctctcctctgcccgtccct
cgcaaagccaccatagagaccagcatctccaccaagccagtcattgacaggaagatgaag
acagctcatgctgacatgatgaactctgagcaatatgacaacacttttctggagactgac
ctgtcctcatttacatggaacacctccacattgccctctgcagtctccactggtaatgca
gcctacagcttccacagcaacaccaacaacatgtcaacaggagcttctcttgtcaacagc
acatccccatcttctttatcagtgtatggattccaaaacaatttaggagttttaagttcc
agtggagctaacacaattccagggtatggggtgcagaaaaattattcatcaatcacaaac
agccctgttggagtgagcgcaggtgtctcaacctcaggatatggggtacagaaaaattat
tcatcaagtccaaacagccctgttggactgagcacaggtgtctccacttcaggatatggg
gtgcagaaaaattattcatcaagtccaaacagccctgtgggagcgagcacaggtgtctcc
acttcaggatatggagtgcagaaaaactattcagcaagtccaaacagcactgttggagtg
agcacaggtgtctccacttcaggaactggcacaagggtccttaatgagaacatgacaaag
aaatacctgacatcagagaaagagaacattcctgtgaagagagagacagaagaacttatt
ttgaccaaagacagtggcaagcagtttaccagcagcgcccccaatggcaaagcagagtca
tattcagatgtttcagtgaagaaggacgtttttacaaccagctattctgaaagcgcacca
gtcaagtctagctctggtgcatactatgggtctacagcagtggcgacaaaagataaagct
acatatgcagagattcataaggctgaggatgaggacgactgtacttgtgtagggggttgt
tgtgggccgcactgctgttcctggtggaagtggctgcttggctttttgctcggtcttctt
ctgctccttggacttttgtttggactcattgctttggctgaggaggtgaagaaactgaag
aatcgtgtcagtactcttgagggaatttcctcctccatgaacgcacacacaagtcgcctg
tcagcttctaatgatggcgttcataatgtcaacaacggtggagttagatctgcatatgag
aatacactggatctggggtctacagacttttcaggcaatttagcactgcagagaaatata
caacaaactctgagagcagagatgcagtctgaagccatgagagaccatctcatgtcttta
gtcaaagctgaaggaggactgcgggggccaaaaggtgacactggacctcaagggcccaaa
ggagacagtggttttccaggacaatcagggtcttcgggagtgccaggacatccaggaaga
gacgggtcgaaaggagaaaaaggtgaacagggtgcagatgggccagcaggtttcagggga
agagatggacagcctggatcccgtggagatccaggaccgccaggaatgggagaaaagggt
gaaaggggtttacctggatttcctggtattgctggtgtacatgggcaaaaaggtgctgcc
ggtttacagggtgaacaaggtcctcgaggctttagcggtgaacctggtcctaaaggtgat
aggggtccacctggaattaaaggtgatcacggtgataaaggagacagtgggattccaggt
gttcctgggtctgcagggagacctggaccaactgctgagaaaggagcaaaaggatcagca
gggcctcaaggacctgatggtgaaaaaggccaaagaggtgagacagggtcaattggccta
ccaggaatccgaggaccagctgggccacccggtgatgctgggctttcaggaactcctggt
ctacaaggacctccaggcattcctggcaatcctggtcaacctggggctaaaggtgagatc
ggtgcacctgggagagtgattaatgcagctggctctagctcagtggctatcccaggccaa
ccaggcagccctggacctcctggcccacctggacaccctggactctcaggtcccatcggc
cctgctggacttcctggacagcctggtcctaaaggtcccaagggagatcaaggagatcaa
ggtgaacctggtattgtagtcagaactagtgagactgtgagttcaaggcgagcagaaagt
gtttatggtgcacagaatgctggtgttactggaccacctggtcccccagggcctcctgga
cgtccaggagattctatacaaggaccaccgggtcaaccaggatacggcagaccaggtcca
aaaggagacaagggagattcaggaagctttgtgccaaattcaggaacgttctttgccgga
ccacctgggccacctggttctccaggacctaaaggagcaacaggtgctcaaggaccaagg
ggataccaaggtgaaccgggtcaacctggccttgcggggagttccggtagagttatcact
gaatatggtgcgggtcaaggaccaccaggtcccccaggtcctccaggaccacccggacgg
gacggacgtaatggggagcctggaataccaggtacagcgatattccaaagagactcaaga
gggtcagttgcagtcgggcccccaggggtgcctggtcctgctggtcctcccggacctccc
ggtgctccaggccattccggtggatcacattcaactgcagattatcgtcgttacatcatg
gagtatatgcagagtgacagcatgaggcagcatttgtctagtattcaagggccaccagga
ccacctggggcttcagtgtctgtggaggaagtggcatctcgggtcgttgcctaccttcag
cgttctggaatcagtggtgtcagtattagtcaaggtccaccgggtcctccaggcccacct
ggaagcataactgctgaatacattatttctctgttacagagagacgatgtgaggcgatat
gtgattggccctccaggaccaccgggagcagctggcagtattgctactagcttcaacaca
caggaagtagcaaactatgtcatcagaataatgagagagcagggaattataaataaggct
ggaccaccaggccctcccggcccccctggcctaccaggcttgacctacagtgacgtaacc
actttaattcagaaatcagggctcagtggaagcattggacatcccgggctccctggtcct
cctggcgtacagggacctcctggtctacccggtgctccaggaagcagctcaactgtgatc
tcaggtttaaaactggaggacatccagctctacctgcagaaaaatggttttagaggaccc
ccaggcccacctggtccacgaggaccccatggacctccaggagatgttacaggcctggta
tcatatagcggatcttcccaagcccagagagaacacatccgtgctgagctgcaggagtac
ttcaacagtgacgctgtaagacgctacggtctccctgggcctcccggaccccctggacag
aaaggtgaacgtggtgaaccaggatacaattatcagaatgtgagaagccagtatcatttg
ggcactgagacgggtgaagcactggactattctaatgttgcactgaaagtgaccgactac
ataaagaatcagggtctactgcaggatcttacggaggggtactggagaggacaagaacaa
cggttccaagggtccccggggccccctggtcctcccgggtacagccgcgtgtttgctgcc
tatggaaacgtgactgctgaccttgtggacttctttagaatacacggggccattccagga
ccccctggtaggcagggacctagaggagagagaggatacccaggaccaaaaggagagaaa
ggggttgtaggaagctcaggaatacctggcctgccgggacaaagaggacccgaaggacca
agaggagagaagggtgaaaaaggtgatacccagtctggtagatggagaagagccactggt
gtataa
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