Triplophysa rosa: 130560038
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Entry
130560038 CDS
T09216
Symbol
pnn
Name
(RefSeq) pinin
KO
K13114
pinin
Organism
tros
Triplophysa rosa
Pathway
tros03013
Nucleocytoplasmic transport
tros03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130560038 (pnn)
03015 mRNA surveillance pathway
130560038 (pnn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130560038 (pnn)
03041 Spliceosome [BR:
tros03041
]
130560038 (pnn)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130560038 (pnn)
Spliceosome [BR:
tros03041
]
Complex C
Other components
EJC/TREX
130560038 (pnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pinin_SDK_N
Pinin_SDK_memA
Motif
Other DBs
NCBI-GeneID:
130560038
NCBI-ProteinID:
XP_057199462
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Position
LG10:complement(22817775..22830123)
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AA seq
668 aa
AA seq
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MAVVVRSLQDQLEKAKESLKSVDENIRKLTGRDPGELRPGQNRRQTITGPGGGRGRGINI
LRRGLSDSGVGPPAKQRDIEGALLRLAGDQRARRESRHDSDAEEDDDVKKPALQSSVVAT
SKERTRRDLIQDQTMDEKGKQRNRRMFGLLMGTLQKFKQESTVSTDRIKRRQEIEQKLEV
QAEQERKKVECERRELFDERRAKQTELRLLEHKVELAQLQEEWNAHNSKLIKFIRTKTKP
PIFYLPGKMCSATQKLMEESQKKLNGTFNERREAFAEQLNKMEARPRRQSQRAGDREMED
SRRAEEAKNEDQKEGKAGIGPSGDRHDVEMEEEEDVVVEGVEENSEVRESGVDQEQEPGE
EKEKQEESERRVVAEEDEEEDDEDDDEEDVGAGESREDEEQMEVQEVSREVEEQGKLQVE
SPQATVEEVGSDQREKEQEIKESSQEDITTDSQKSPENHMGTLAMESKEPLLEVPAPNAV
EPDAKLKDPALESQPSPPEPDPEVPSQEQIEEPSVQPEAPKSDTKEASGGVDNTRGRTKV
KAKRSKSRSSSSSSSSSSSSSSSSGSSSSSGSSSRSSSSSSSSRSRSHGRDRDARDRKSH
RRPPDRERRKSGSERGHKSSKSSGRESKSSKDKGSKPDRKRTSPEVSRSGRRPSRSERDR
KSDRKDRR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggtcgtgcgaagtttgcaggaccagctggagaaagccaaggaaagcttgaaa
agcgtggatgaaaatatccggaaactaacaggcagagatcctggcgaattaagaccgggt
caaaacagaaggcagaccatcacaggccctggtggaggtagagggcgtggaatcaacata
ttgaggcgtggtctctcagatagcggtgtaggacccccagccaaacagagagacattgaa
ggggccctcttgaggctggcaggggatcagcgagccaggagagagtcacgccatgacagc
gacgctgaggaagatgacgatgtcaaaaaaccagcgttgcagtcatctgtggtagctacc
tccaaagaacgtacgcgccgagatcttattcaggatcagaccatggacgagaaaggaaaa
caaagaaatcggcgcatgtttggtctgttgatgggaaccttacagaagtttaaacaggag
tcaacagtgtccacagacaggataaaaagacggcaagaaattgagcagaaattggaagtg
caggcagaacaggaacgtaaaaaagttgagtgtgaaaggcgagagctctttgatgaaaga
cgtgccaaacaaacagagctacgacttctggagcataaagtggagctcgctcaactgcaa
gaggagtggaatgcacacaattctaagctcatcaagttcattcgcactaagaccaagccc
ccgatcttttacctgcctggcaaaatgtgttcagccactcaaaagctcatggaggagtcg
cagaaaaagttaaatggtacgtttaatgagagacgtgaagcctttgcagaacaactgaac
aaaatggaagctcggccaaggcgtcagtcccagagggcaggggacagagaaatggaggac
agccgtcgggctgaagaggcgaagaacgaagatcaaaaggagggtaaggctggaatagga
ccgtcaggtgacagacatgatgtggagatggaggaggaggaggatgtagttgtggaggga
gtagaggaaaactcagaggtgagggagagtggggtagatcaagagcaggagcctggggag
gagaaagagaaacaagaggaaagtgaaaggagggtggtggcggaggaggacgaggaggaa
gatgatgaggatgatgatgaggaagatgtgggagcaggtgagagtagggaagatgaagaa
caaatggaggtccaagaagtttccagggaggttgaagaacagggtaagttgcaggttgag
agtccacaagctacagtagaagaggtaggtagtgaccagagggagaaggagcaggagata
aaggagtcgtctcaggaggacatcacaacagactcgcagaaatcccctgaaaatcacatg
ggaacactggccatggaatctaaagagcctctgctggaggtcccagcccctaatgcagta
gaacctgatgccaaactgaaagaccctgctcttgaatcccaaccgtcaccacctgaacct
gatccagaagtaccttcccaggagcagattgaagagccatcagtccagccagaagcacca
aagtcagacacaaaggaggctagcggaggggtagataacactcggggtcgcaccaaagtt
aaagccaagaggagcaagagtcgaagcagcagtagctcctcttccagttcatcttcaagc
tcctcttccagtggatccagttcttccagtggctccagcagcaggagcagctcctcttca
tccagttcacgctctcgaagtcacggcagggatagagatgcccgagaccgcaaaagccac
cggagaccgccagacagggagcgtaggaaaagcgggagcgagaggggacacaagtcctcc
aaaagcagtggccgcgagagcaaaagttcaaaagacaaaggctctaaacccgacagaaag
aggacgagtccagaggtgagcaggtcagggagacgcccctcccggagtgagagagatcgc
aagtctgatagaaaagatcgacgttga
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