Triplophysa rosa: 130560565
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Entry
130560565 CDS
T09216
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
tros
Triplophysa rosa
Pathway
tros04140
Autophagy - animal
tros04142
Lysosome biogenesis
tros04145
Phagocytosis
tros04148
Efferocytosis
tros05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
130560565 (vps39)
04142 Lysosome biogenesis
130560565 (vps39)
04140 Autophagy - animal
130560565 (vps39)
04148 Efferocytosis
130560565 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
130560565 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tros04131
]
130560565 (vps39)
Membrane trafficking [BR:
tros04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
130560565 (vps39)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
VPS18_solenoid_2nd
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
130560565
NCBI-ProteinID:
XP_057200418
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All DBs
Position
LG10:complement(3747848..3760815)
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AA seq
875 aa
AA seq
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MHDAYEPVPILEKLPLQIECLAAWDDWLLVGTKPGHLLLYRITKDAGTNRFEVTLEKSNK
NFSKKIQQLFVVSQYKILVSLLENNIHVHDLLTFQQITVVSKAKGATLFACDLQQSSSGE
AKLRMCVAVKRKIQLYYWKDRDFHELQGDVAAPDIPKSMAWCENSICVGFKRDYYLIRMD
GRGTVKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPVAME
HQPPYIIAVLPRYVEIRTLEPRLLVQSVELQRPRFITSAGSNVVYVASNHFVWRLVPVSI
ASQIRQLLQDKQFELALQLAKMKDDSDADKRQQIHHIQNLFAFNLFCQKRFDDSMQVFAK
LGTDPTHVIGLYPDLLPTDYRKQLHYPNPLPTLSGAELEKAHLALIDYLTQKRSHLVKQL
NDSDPSTTSPLMEGTPTIKSRKKLLQIIDTTLLKCYLHTNVALVSPLLRLENNHCHIEES
EYVLKKAHKYSELIILYEKKGLHQKALQVLLDQSTKANSPLKGHERTVQYLQRLGVENLG
IIFEFSPWVLKICPEDGLKIFTEDLTEVETLPRDKVLNFLKEGFKELAIPYLEHIIYVWE
EKRAEFHNVLIQLYLEKVQGLMKEYLNSLPEGVPAVSAGKEDGELGEFRNKLLSFLEISS
SYEPERLVSDFPFDGLLEERALLLGRMGKHEQALFIYVHVLKDTHMAEEYCHSHYDPDTI
SHKDVYLSLLRMYLSPPDVHFLGPIKMELCEPQANLQAALTVLQLHHGKLNTTKAINLLP
ANTQIREIQVFLENVLEEKARRKRFDQILKSLLQAEFLRVQEERIFHQQVKCVITDEKIC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSTCPSE
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atgcatgacgcctatgagccggttcctattctggagaaattacctcttcagatcgaatgt
ctggcggcctgggatgattggctccttgttgggaccaaaccgggtcacctcctgctttac
aggatcacgaaagatgcaggtacaaatagatttgaagttaccttggagaaatccaataag
aacttctcaaagaagattcagcagctgtttgtggtgtcccagtacaagattttggttagt
ctcttggaaaataacatccacgttcacgacctgctcacgttccagcagatcacagtggtg
tccaaagccaaaggggccacactttttgcctgtgacttgcagcagtccagctcaggtgag
gccaaactgagaatgtgtgtggcagtcaagaggaaaatccagctgtattactggaaggac
agagattttcatgaattacagggagatgttgccgctccagatattcctaaatccatggct
tggtgtgaaaactcaatatgtgtgggtttcaaacgagactactatctcattcggatggat
ggccgtggcactgtaaaggagctctttcccacagggaaacagctggaaccattggtcgcc
ccactggctgatgggaaggtggcagtgggtcaggatgacctcacggtggtcctgaatgaa
gaaggggtctgcactcagaaatgtgccctcaactggacagacattcctgttgcaatggag
caccagccaccgtacatcatcgcggtcctgccgcggtacgtggagatccgcacgctggag
cccagactgctggtgcagagcgtggaactgcagagaccacgattcatcacttcagccggg
tcaaatgttgtgtatgtggcaagcaatcattttgtttggcgtctggtgccagtgtctata
gccagccagatccgacagctgttgcaggacaaacagtttgagctggcgcttcagctggcg
aaaatgaaggacgactcggatgcagacaagagacaacagatccatcacattcagaacctg
tttgccttcaatctgttctgtcagaaacgctttgatgactcaatgcaggtgtttgcaaag
ttaggcacagatcctactcatgttattggactgtatccagacctgcttcccactgactat
cgtaaacagttgcattaccccaatcctctgcccacactgtctggagctgaactggagaaa
gctcatttggctctcatagactacctgacacagaaacgcagtcatctggtgaagcagctg
aacgactctgatccctccaccacatctcctctcatggagggaacaccgaccatcaagagc
cgcaagaaactccttcagatcatcgacaccacactgctcaagtgttacctccataccaac
gtggccttagtgtcgcctctcctgcgactggagaacaatcactgtcacatagaggagagc
gagtatgtgctgaagaaagcccacaaatacagcgagctcatcatcctctatgagaagaaa
ggccttcatcagaaagctctgcaggttctgctggatcagtccactaaagccaactcgcct
ctgaagggtcatgagaggacagtccagtatcttcagagactcggtgttgagaacctgggc
atcattttcgagttttctccatgggttttgaagatatgtccagaggacggcctgaagatc
ttcacggaggacctgacggaggtggagactttacccagagataaggtgctgaactttctg
aaggagggttttaaggaactggccatcccgtacctggagcacatcatatacgtatgggag
gagaaacgggcagagtttcacaacgttctgattcagctctatctggagaaggtgcagggt
ctcatgaaagagtatctgaactcactgcctgaaggagttccagccgtgtctgcaggtaag
gaggacggggagctcggggagtttcgcaacaagcttctgtcgtttctggaaatttccagc
agctacgagccagagagactcgtcagcgatttcccgtttgacggtctgctggaggagaga
gctctgctcttgggtcggatgggcaaacacgagcaggctctcttcatctacgttcacgtt
ctgaaagacacacacatggctgaagagtactgccacagtcattatgaccctgacactatc
agccataaagatgtgtatctgtctctgctgcgcatgtatctgtctcctccagacgtgcac
ttcttgggtcccatcaagatggagctgtgtgagccacaagccaatctccaggcggccctg
acagttcttcagcttcaccacggcaaactcaacaccaccaaagccataaacctcctgcca
gccaacacacagatcagagagatccaggtgtttctggagaacgtgttagaggagaaagct
cgacggaagcgctttgatcagatcctgaagagtctcctgcaggccgagtttctgcgagtt
caggaggagcgaatctttcaccagcaggtgaagtgtgtcatcacagatgagaagatctgt
cgagtgtgtaagaagaagatcggtaacagtgcctttgccaggtatcccaacggtgtggtg
gttcactacttctgctgtaaagaccgcagcacgtgtcccagcgaatag
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