Triplophysa rosa: 130561499
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Entry
130561499 CDS
T09216
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tros
Triplophysa rosa
Pathway
tros03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130561499 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130561499 (xab2)
03041 Spliceosome [BR:
tros03041
]
130561499 (xab2)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130561499 (xab2)
Spliceosome [BR:
tros03041
]
Complex B
Other components
Prp19-related factors
130561499 (xab2)
Complex C
130561499 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_2
Suf
TPR_12
TPR_8
TPR_15
NRDE-2
ARM_TT21_C
ARM_TT21
TPR_16
ATG1-like_MIT2
TPR_1
Tcf25
LTN1_E3_ligase_6th
Motif
Other DBs
NCBI-GeneID:
130561499
NCBI-ProteinID:
XP_057201871
LinkDB
All DBs
Position
LG11:complement(19927705..19933847)
Genome browser
AA seq
845 aa
AA seq
DB search
MPTLSGKTDVIFEEDDLAYEEEIIRNPYSVKCWMRYIEHKQNAPKSVLNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCVTDPANEEVNNCHERALVFMHKMPRIWIDYCQFMVSQCK
ITRSRRTFDRALRALPVTQHCRIWPLYLRFGRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRTVGHLDEAALRLAAVVNDENFVSKEGKSNYQLWHELCDLISQNPDKVTSFNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTSELGQDEDEDIDLELRLARFEQLITRRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGQPRQIINTYTEAVQTVDTMKATGKPHMLWVSFGRFYEDNEQLDDARTIFEKATKVI
YKQVDDLAAIWCEYGEMELRHENYDQALRILRKATAIPARKAEYFDSSEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEDSFKAYERGI
ALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPVKYAKTIYLLYAKLEEE
YGLARHAMAVYERATSAVESEERHQMFNIYIKRAAEIYGVTHTRAIYQKAIEVLPDAHAR
DMCLRFADMESKLGEIDRARAIYSYCSQICDPRMTAHFWQNWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQIIKATTGTVSDLAPGQSGVDDMKLLEQKAQQLAKEAEQDKP
KPKDKILFVRSDTSRSELAELAKQANPDEIDIDDDDEDADDGEPDEVQLEQKSVPTAVFG
GLKED
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgccaactctcagcggaaaaacagacgtgatattcgaagaagatgatttggcttatgaa
gaagagatcatcaggaatccatattcagtcaaatgttggatgcgttacattgagcacaag
cagaatgctcccaagtctgtgctcaatatgatctatgaaagagctttaaaagaactgcct
ggcagttataagttatggtacaattacctgagagagaggaggaaacaggtgaaaggcaag
tgtgtcacagatccagccaatgaggaggtcaacaactgtcacgagagagctctagtgttt
atgcacaagatgccgaggatatggattgattactgtcagttcatggtgtctcaatgtaaa
attacacggagcagacggacgtttgatagggctttaagagcgctgcccgtaacccagcat
tgtcgcatctggcccctgtatcttcgttttggccgtaacttacctctcccagaaacggct
atccgtgtttaccggcgttacctgaagttatctcctgagaatgcagaagaatacattgat
tacctacgaacggtcggacatctggatgaagctgcgcttcggttggcagctgtcgtcaat
gatgaaaactttgtttctaaagagggaaagtcaaattatcagctctggcacgagctctgc
gacctcatctcacaaaacccagacaaggtgacgtcattcaacgtgggagccattattcga
ggaggtctcactcgctttactgaccaacttggcaagctctggtgttctctggctgattac
tacatccgcagtggccactttgagaaggctcgagatgtatacgaggaagccatcctaacc
gtagtcacggtgcgagatttcacccaggtgttcgacagctacgcacagtttgaggaaagc
atgatcgccgccaaaatggagaccacgtctgaactgggacaggatgaagatgaggacatt
gacttggagttacggttggcacgattcgagcagctgataactcgacggccgctcttgttg
aacagcgtgctgctgcgtcagaatcctcacaatgttcacgagtggcacaagagagttaaa
ctctacgagggtcaaccacgacagataatcaacacgtatactgaggctgtgcagacagta
gacacaatgaaagccacaggaaagcctcacatgctctgggtttccttcggcagattctat
gaagataatgagcaactggatgatgctcggaccatctttgaaaaggccaccaaggtgatt
tacaaacaggtggatgatcttgctgcaatatggtgcgagtatggagagatggagctgaga
catgaaaattatgatcaggctctacgcatactaaggaaagcaactgcgattccggcaagg
aaagcagagtatttcgattcatctgaaccggtgcagaatcgagtgtacaaatcccttaaa
gtctggtccatgcttgcagacttagaggaaagtctgggcacattccagtctacaaaggca
gtgtatgatcgcatcattgatctcaggatcgccacacctcagattattataaactatgcc
atgttccttgaggaacacaactactttgaggacagcttcaaggcatatgagcgtggcatt
gccctctttaaatggcctaatgtccatgatatctggaacacatatctcacgaagttcatc
gatcgatatggaggcaagaagctggagagagcacgagatctgtttgagcaagctctggac
gggtgccctgttaaatacgccaaaacgatctacctgctgtatgctaagctggaggaggaa
tacggtcttgcacgtcatgccatggctgtgtatgagagagccacctctgctgtagaatcg
gaggagcgccatcaaatgttcaacatctacatcaagcgggcagcagagatttatggggtc
acacacacaagagccatctatcagaaagccattgaggtcctgccagatgcgcacgccaga
gacatgtgtctgcgctttgctgatatggaaagcaaacttggagagatcgaccgagcaaga
gccatctattcctactgctctcagatctgtgatccaaggatgactgctcatttctggcaa
aactggaaagagtttgagattcgccacgggaacgaggacacaatccgtgagatgctgcgt
attaaacgcagtgtgcaggccacttataacacacaggtcaacttcatgtcctctcagatc
ataaaggccaccactggaacagtgtcagatctcgctccagggcagagcggggtggatgac
atgaagttgttggagcagaaggctcagcagctggcaaaagaggccgagcaggacaaaccc
aaacctaaagacaagatccttttcgtcaggagtgacacctctcgcagcgagctcgccgaa
ctggccaaacaagccaatccagatgagattgacattgatgatgatgatgaggatgcagac
gatggagaacccgatgaggtccagctagagcagaagtctgtccccactgctgtcttcgga
ggactaaaggaagactga
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