Triplophysa rosa: 130561537
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Entry
130561537 CDS
T09216
Symbol
smarca4a
Name
(RefSeq) SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4a
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
tros
Triplophysa rosa
Pathway
tros03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130561537 (smarca4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130561537 (smarca4a)
03036 Chromosome and associated proteins [BR:
tros03036
]
130561537 (smarca4a)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130561537 (smarca4a)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
130561537 (smarca4a)
Chromatin remodeling factors
BAF complex
130561537 (smarca4a)
PBAF complex
130561537 (smarca4a)
GBAF(ncBAF) complex
130561537 (smarca4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
HSA
Bromodomain
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
130561537
NCBI-ProteinID:
XP_057201930
LinkDB
All DBs
Position
LG11:complement(5066310..5082896)
Genome browser
AA seq
1619 aa
AA seq
DB search
MSTPDPPMGGTPRPGPSPGPGPSPGAMLAPSPGSAHGMMGPSPGPPSSGHPLPPQGPSGY
PQDGMHPLHKPMEGMHEKGIPEDQRYAQMKGMGMRHGGHSGMGPPPSPMDQHSQGYPSPL
GGSDHAPSPVPANGPPSGPMMPSGPGALPMEGGDPQAMSQNRSVGAGVAGPSAGPPIAGG
PGVAGGATPFNQNQLHQLRAQIMAYKMLARGQPLPDHLQMAVQGKRPMPGMQQGMPNMPP
GSGQGAGPPGPGGPGPGGPNYNRPHGMVGPNMPPPGPSGVPPGLQGQPPNGPPKSWPEGP
MVSAAAPASGPQKLIPPQPTGRPSPVPPSVPPAASPVMPPQTQSPGQPPQPPPMVLHQKQ
NRITPIQKPRGLDPVEILQEREYRLQARIAHRIQDLENLPGSLAGDLRTKANIELKALRL
LNFQRQLRQEVVVCMRRDTALETALNGKAYKRSKRQSLREARITEKLEKQQKIEQERKRR
QKHQEYLNSILQHAKDFKEYHRSITGKMQKLTKAVATYHANTEREQKKENERIEKERMRR
LMAEDEEGYRKLIDQKKDKRLAYLLQQTDEYVANLTELVRAHKAVQALKDKKKKKKKKKS
EVVEGGAPALGPDGEPLDETSQMSDLPVKLIHVNSGKVLTGMDAPKAGQLDAWLEMNPGY
EVAPRSDSEDSGSEEEEDEEDEQHQPSQTSDEKKKIPDPDSEDVCCEDVRHIIDDAKQDV
DDEYGSAAFARGLQSYYAVAHAVTEKVDRQSPLLVNGILKQYQIKGLEWLVSLYNNNLNG
ILADEMGLGKTIQTIALITYLMENKRVNGPFLIIVPLSTLSNWVYEFDKWAPSVVKISYK
GSPAARRAFLPILRNGKFNVLITTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQ
VLNTHYLAPRRVLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVD
LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG
VLLTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFSGGIVQGADL
YRASGKFELLDRILPKLRATNHKVLLFCQMTTLMTIMEDYFSFRNFKYLRLDGTTKAEDR
GTLLKNFNDPSYQYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQ
QNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAGMFDQKSSSHERRAFLQAILEHEE
QDEEEDEVPDDETVNQMIARSEEEFDHFMRMDLDRRREEARNPKRRPRLMEEDELPTWIM
KDDAEVERLTCEEEEEKMFGRGSRQRKEVDYSDSLTEKQWLKAIEEGTLDEIEEEVRHKK
TTRKRKRDRDLDLPGPATPSSSGRSRDKDDDTKKQKKRGRPPAEKLSPNPLALTKKMKKT
VDAVIKYKDGNGRQLSEVFIQLPSRKELPEYYELIRKPVDFRKIKERIRSHKYRGLNDLE
KDVMLLCQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKEEESEGEDSEEEEDELDEGS
ESESRSVKVKIKLSRKEKVERGKGRRRTGRSSRPKPVVSDDDTEEDQEEEHSASGSDDD
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atgtccacccctgacccacctatgggcgggacgcctcggccgggcccttccccaggccct
gggccatctccaggagctatgttagcaccgtcacctggctctgcccacgggatgatgggc
cccagccctggtcccccctcctcaggtcatcctctacctccgcagggcccctcaggttac
cctcaggatggcatgcacccactgcacaagccgatggaaggcatgcatgagaaaggcatt
cctgaagatcagcgttacgctcaaatgaagggtatgggcatgagacatggtgggcacagt
ggcatgggaccaccacccagccctatggaccaacattcccaaggttacccctctcctctg
ggaggatctgatcacgccccaagtccggtgcctgccaacggtcctccctctggtcccatg
atgccatccggccctggcgctttacccatggagggtggtgacccacaggccatgagtcag
aaccgaagcgtaggtgcgggtgtagcgggacccagtgcgggacctcccatcgcaggagga
cctggtgttgctgggggagccacaccttttaaccagaaccaactccaccaacttcgggct
cagatcatggcttataagatgcttgcgcgtgggcagcctcttcccgatcatttgcagatg
gcagtacaggggaaaagaccgatgccgggtatgcaacagggaatgcccaacatgccccct
ggctcaggacaaggagcaggccctcctggaccgggtggcccaggacctgggggtcccaat
tataatcgaccacatggaatggtcggaccaaacatgcctcctccgggaccctcaggggtt
ccccctggcctgcagggacaacctcctaatggaccacctaaatcatggcctgaagggccc
atggtgagcgctgctgctcctgccagtggcccacaaaagctgatacctccacagcccact
ggccgcccctctccagtgccaccttcagttccacccgctgcctcgcccgtcatgccccct
caaacccagtctccagggcaaccgccccagccgcctcctatggtgctgcatcagaaacag
aaccgcatcacgcccatccagaaaccccgtggccttgatccggtggagatccttcaagaa
agagagtacaggctacaggctcgtattgcacatcgcattcaggacctggagaaccttccg
ggttctctagctggagacttgaggaccaaagctaacattgagctgaaggcactgaggctc
ctgaactttcaaagacagcttcgtcaggaagtggtggtgtgcatgagacgtgacacggcc
ctcgaaacggcgctgaacggcaaggcctacaaacgcagcaagagacagtccctccgtgag
gctcgtatcactgagaaactagagaaacagcagaagatcgagcaggaacgcaagcgcaga
cagaaacaccaggagtatctcaacagcatcctgcagcacgcaaaggacttcaaggaatac
catcgctccatcaccggaaagatgcagaagttgaccaaagctgtggccacgtaccacgcc
aacactgagagggagcagaagaaggagaacgagaggatcgagaaggagagaatgaggcgc
ctgatggctgaggatgaggagggttacaggaagttgatcgaccagaagaaggacaaacgt
ctggcctacttgctgcagcagacagatgagtacgtggccaacctcaccgagctcgtgcgt
gcccacaaagccgtgcaggccctcaaggacaagaagaagaagaagaaaaagaagaagtct
gaggttgtggagggcggagctcccgctttgggtccagatggagagcctctggacgagacc
agtcaaatgagcgatctgcccgtgaagttgattcacgtgaatagcggaaaggtcctgacc
ggcatggatgctcctaaagccggacaactggatgcttggctggagatgaatccagggtac
gaggtggccccacggtcagacagtgaagatagtggctcagaggaggaagaggatgaagag
gatgaacagcatcagccttctcagacctcagatgagaaaaagaagatcccagatccagac
agcgaagatgtgtgctgcgaagatgtccgtcacatcatcgatgacgccaagcaggatgtc
gatgatgaatacggtagcgcggccttcgctcgcggcctgcagtcatactacgccgtggct
cacgcagtcactgagaaggtggatagacagtcgcccctgctggtgaacggaatactcaaa
cagtaccagatcaaaggcttggagtggctggtgtctctgtataataataacttgaatgga
attctggctgatgaaatgggtttggggaaaaccatccagaccatcgcgctcatcacctac
ctcatggagaacaagcgagtcaacgggcccttcctcattatcgttcctctctccactctg
tccaactgggtgtacgagtttgataaatgggctccgtctgtggtgaaaatttcttacaag
ggctctccagctgctcgccgagcgttcttgcccattttgcgtaacggcaagtttaatgtg
ctgatcactacttacgaatatatcatcaaagacaagcaagtgctagccaagctgcgttgg
aagtacatgatcgtggacgaggggcatcgtatgaagaaccatcattgcaaactgactcag
gtgttaaacacgcactatctggcgccgcggcgtgtactgctcaccggcacgccgctgcag
aacaagctgcccgagctctgggcgctgctcaacttcctgctgcccaccatcttcaagagc
tgcagcacctttgagcagtggttcaacgctccgttcgccatgactggagagaaggtggac
ctgaacgaggaagagaccattctgattatccgacgtctgcacaaagtgctgcgccccttc
ctgctcaggaggctgaagaaggaagtggaggcccagctgcctgagaaggtggagtatgtg
atcaaatgtgacatgtcggccctgcagagagttctgtatagacacatgcaggctaaagga
gtgctgctcaccgacggatcagagaaggacaagaagggtaaaggaggcacgaagactctg
atgaacaccattatgcagctgaggaagatctgtaaccacccttacatgttccaacacatc
gaggaatccttctcggaacaccttgggttcagcgggggcattgttcagggagctgatctg
taccgggcctctggtaaatttgagctgctggaccgtatcctgcccaaactccgagccacc
aaccacaaagtgctgctcttctgtcagatgaccactctcatgaccatcatggaagactac
ttctccttccgcaacttcaagtacctgcgcttggacggaaccactaaagctgaagatcgc
ggcacgttgctgaagaactttaatgatccatcctatcagtacttcattttcttgctgagc
accagagcgggaggtttgggtttgaacctgcagactgccgacaccgttatcatctttgac
agtgactggaaccctcaccaggatctgcaggctcaagatcgagcccatcgcatcgggcag
cagaacgaggtgcgtgtgctgcgtctctgtaccgtgaacagcgtggaggagaagatcttg
gccgctgccaaatacaaactcaacgtggaccaaaaggtcatccaggccggtatgtttgac
cagaagtcctccagccatgagcgcagagctttcctgcaggccatcctggagcacgaggag
caggatgaggaggaagatgaggtgcctgatgatgagaccgtgaaccagatgatcgccaga
agcgaggaagagttcgatcacttcatgcgcatggatctagaccgtcgccgcgaagaagct
cgcaacccgaagcgcagacccagactgatggaggaggatgagctgcccacgtggatcatg
aaggacgatgcagaagtggaaaggctgacctgcgaggaagaggaggagaagatgttcggc
cgtggctcccgtcagaggaaggaagtggactacagcgactcgctcacagagaagcaatgg
ctaaaggctatcgaggaaggaacccttgatgaaattgaggaggaagtgcgccacaaaaag
acaacccggaagaggaagcgcgaccgtgaccttgaccttccagggccggccacgcccagc
tccagtgggcggagcagagataaagatgatgatactaagaagcaaaagaaacgtggccgt
cctcctgctgaaaaactttcgcccaaccctctggcactcaccaagaagatgaagaagacc
gtggatgccgtaatcaaatacaaagacggtaacggaaggcaactgagtgaagtgtttatt
cagcttccctctcgcaaagagctgcccgaatattacgagctcatccgcaaacctgtggac
ttcaggaagatcaaggagcgtataaggagccacaagtaccgcggtctaaatgacctggag
aaggacgtcatgcttctgtgccagaacgctcagaccttcaacctagagggatcgctgatc
tacgaggactccatcgtgctgcagtccgtgtttaccagcgtgcgacagaagatcgagaaa
gaggaagagagcgagggagaggacagtgaggaggaagaggacgagcttgatgagggatcc
gagtcggaatctcgttcggtgaaggtgaagattaagctgagtcgaaaggaaaaggtggag
agagggaaaggcaggcgacgaaccggccggagctcacgccctaaacctgtcgtcagtgac
gatgacactgaggaggatcaagaagaggagcattcagctagcggcagcgacgatgattaa
DBGET
integrated database retrieval system
