Triplophysa rosa: 130561851
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Entry
130561851 CDS
T09216
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tros01001
]
130561851 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tros04054
]
130561851 (ciita)
Enzymes [BR:
tros01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
130561851 (ciita)
Protein kinases [BR:
tros01001
]
Serine/threonine kinases: Other
TAF1 family
130561851 (ciita)
Pattern recognition receptors [BR:
tros04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
130561851 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
LRR_4
NLRC4_HD2
LRR_8
nSTAND3
AAA_25
DUF87
Pox_A32
AAA_22
AAA_7
Motif
Other DBs
NCBI-GeneID:
130561851
NCBI-ProteinID:
XP_057202439
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All DBs
Position
LG11:complement(9887216..9899449)
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AA seq
1184 aa
AA seq
DB search
MSTSHSCYPVMVPFEDVLFQVRKALQVGPSLLYGLLEELHEARVFSTPFYRSLFKDGGQS
LAEILFNDEEDLARRLSLPIWQKWDVSQVILDSALNIEEDLSAFLNSPDAESQDMIDTID
SGLDLLPDQLVSDIIDSILSEDYFEDILADPSILEDDFNFPCDADTACTLTSENAAILDQ
NITRKRKGKDASKSNKTPTKRNRKATACLESPPNRSTPTIASEGNFHSFNSFQHVLQLSS
IPPITNITAFDSPPFLSPSGGSALQIIQTSGSLARPLISTVVPFRHTYVIVSPQPVSPVT
QILPVSPAVGTVAPPELTVAVLPVGTLSDSASKGLPSHPVDTLSPTKVDSSNTCVLADGK
PRKNIDSPPPKPAAKVRPEAPKCVKDFIHRAKPYIRNVCSAMRGGLGMESHYIDMHLIPR
KLLIKSGKNANKCLEKELVVLSDSERKKSQLDRSQVFQNNLPRPKHSIAILGKTGVGKTA
MIQRLCLDWASGSLSQFQFVFLLDCKNLDLKKSSYSLKHLLFDLSVSPRCEESDAVFKHV
LSSPEDVLIIFDSFDDIKDFEGLLQAPAKSPKDTKYTVKQLFSGLFQKEILPGCTLLIAT
RPKEVLNQVLRKMDSLLELCHFSPEDIELYTTKYFRDSSIQEKALQKIQNKKYIFSICSN
PLLCWTTCFLLEHQDGNGEALPSTLTELYQKVTSKHLQLASRENSSLSNPKRKEIPQLCK
TAWEGFKNHNTHINIDGSPELVDYCLKSGILASYGRENHFEDLYIQNLLGALHSVQSKQV
NEKMLLAHSVVQQKKRKVQGESQDVMQSFVTGLLFQKARPDGVSILDGNVDVQAKRKAVE
THLLNLKLNELNPARLLELFHCVYETSNAKFARLLLKKLPDNLSFCGTQLCSSDVYVICH
LLQHSTTLKRTFSINLQETSIPISDLRELVELKCITSFWAHTGDTIALWEDLHHSNNELN
LKGAIEKFTLNPLKATQGHHIENLPLLVHIHREKKLPMSDFVPTLNEGVPALRHLQKLEF
ELGVQNGPEMFPKLIEVLPSLQSLQHLDIEKNKIGDSGAEKLAGVLHFLASLKWLNLSQN
CIGDAGVKKLAKALVRVPSLQSLSLYGNLIADNGAEELALVLPDMKLLQDLDVKFNKFTD
IGAKKLSAALKNCTGMKSLELWNNCIPWGVFEHLHQQDPRIRSL
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctctcacagctgttatccagtcatggttccttttgaggatgtgctgtttcag
gtgagaaaagctttgcaggttggccctagcctcctgtatggactcctcgaggagctgcat
gaagccagagtcttctccacgccgttctaccggtctctcttcaaggatggaggacaaagt
ttggccgaaatcctttttaatgatgaagaggatctggccaggagactgtctttacctatt
tggcaaaaatgggatgtcagccaagtcatcttggattcggcattgaatattgaggaggat
ttaagtgcatttctgaacagtcctgatgctgaatcgcaagatatgatagataccatagat
tcagggttggatctactacctgaccagcttgtttctgacattattgactccattctaagt
gaagactattttgaagacattttggcagatcccagtatccttgaagatgattttaatttt
ccatgtgacgcagacacagcctgcacactgacatcagaaaatgctgctattttagaccaa
aatataactagaaaacgaaaaggtaaagatgcttccaaatccaacaaaaccccaactaaa
cgcaacagaaaagcaacagcgtgccttgaaagtccccctaacagaagtactcccaccatt
gcctctgagggaaatttccactcattcaactcattccagcatgtattacaactgtccagc
atcccacccataaccaacatcactgccttcgacagccccccttttctatcccctagtggt
ggttctgcgctgcaaatcatccagacctccggttcccttgcgcgcccattgatcagcact
gtggttccatttaggcacacatatgtgattgtgtcaccgcaacctgtaagtccagtgact
caaatacttcctgtttcacctgctgttggcacagtcgctcctccagaactcaccgttgcc
gtgcttccagttggcacattatcagacagtgcaagcaagggcttgccatcacaccctgta
gatactctctctcctacaaaagtggacagtagcaacacctgtgtgttagcagatggaaag
ccacggaagaacattgattccccacctcccaaaccagccgccaaagtccgtccagaggca
ccaaaatgtgttaaggattttattcatcgtgcaaagccttacatcaggaatgtctgcagt
gctatgcgtgggggactgggaatggagtcgcactacatcgacatgcatctgatcccgagg
aaactcctaatcaaatctggcaagaatgctaacaagtgtctggagaaagaactggttgtg
ctcagcgactcagagcgaaagaagagccagctggatagaagtcaagttttccaaaacaat
cttcccagaccaaaacactcaatagcaatccttggaaaaaccggagtgggaaaaaccgcg
atgattcagcggttgtgcttggactgggcgagcggtagcctgtctcaatttcagtttgtg
tttttgttggactgtaaaaatttggacctcaagaaatcgagctacagcttaaaacattta
ctgtttgatttgtctgtgtctccccgctgcgaggaatcggacgctgtgttcaaacacgtt
ctctcttctcccgaagacgttctcattattttcgatagctttgatgacattaaagacttt
gaggggctccttcaggctcccgctaaatcacccaaagacactaaatacaccgtcaaacag
ttgttctcaggtctgttccagaaggaaattctcccgggttgcacgcttctcatcgccaca
cgacctaaagaggttttaaaccaggtgctgcgaaaaatggacagccttttggagctttgt
cacttctcccccgaggacatagagctctacacgaccaaatatttcagggactcctccatc
caggagaaagcgctgcaaaaaatccaaaataaaaaatacatctttagtatatgctccaac
ccgctgctctgctggactacgtgtttccttctggagcatcaagacggcaacggtgaagct
ttaccttcaactctcacagagttgtatcagaaagtgacctccaagcatttgcagctggct
agccgggaaaacagctcattatctaacccaaaacggaaggaaatcccgcaattgtgcaaa
accgcttgggaaggattcaagaatcacaatacgcacataaatatcgacggttcaccggag
ttggtggactactgtctcaagagtggcatacttgcgtcatacggtcgagagaaccacttt
gaagacctttacattcagaaccttctaggtgccttgcactcggtacaatccaaacaagtg
aatgaaaaaatgctgttggcccacagcgtggtccagcagaagaaacggaaagttcagggg
gagtcgcaggatgtgatgcagagcttcgtcacgggcctgcttttccagaaggctcgacct
gatggagtttccatcctggatggcaacgttgacgtacaggccaaaaggaaagctgtagaa
acccatctgctgaacctgaagcttaatgaattgaatcccgccaggctgctcgaactcttt
cattgcgtttatgagaccagcaatgccaaatttgccagactgctgttgaagaaactcccc
gacaatctgtcgttctgtggaacgcagctctgctcatcagatgtgtatgtcatatgccat
cttcttcaacattctaccacattgaaacggaccttctcgattaatctgcaagaaacatca
attcctatcagtgacctgagagagctggtggagctgaaatgtataacgtcattctgggca
catacaggggacaccattgcattgtgggaggacttacatcacagcaacaatgagttgaac
ctgaaaggtgccattgagaaattcaccttgaacccactgaaagcaacacaagggcatcac
atagagaacctgcctctccttgttcacattcacagagagaagaagttaccaatgagtgat
tttgtgcctacactcaatgaaggtgtaccagccctcaggcatcttcagaaactagaattt
gagcttggagtccaaaatggtcctgaaatgtttcctaaacttatagaagtcctgccttct
ttgcagtctctacagcatctggacattgagaaaaacaaaattggcgactctggagctgag
aagcttgctggtgttctgcactttctggcatcgttgaaatggttaaatctgtctcagaac
tgcattggagatgctggagtgaagaaactggctaaagctcttgtaagagtcccttcatta
cagagcctcagcctgtatggaaatcttattgctgacaatggagctgaagaactggcatta
gttttaccagatatgaaacttctgcaggacctggatgtgaagtttaacaagttcacagac
ataggagctaaaaagctcagcgctgctctgaaaaactgcactggcatgaagtctttggag
ctgtggaataactgcattccgtggggagtttttgaacaccttcatcaacaggacccacgg
attagatcactatga
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