KEGG   Triplophysa rosa: 130562778
Entry
130562778         CDS       T09216                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
tros  Triplophysa rosa
Pathway
tros03420  Nucleotide excision repair
tros04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:tros00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    130562778 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    130562778 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tros04121]
    130562778 (ddb1)
   03400 DNA repair and recombination proteins [BR:tros03400]
    130562778 (ddb1)
Ubiquitin system [BR:tros04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     130562778 (ddb1)
DNA repair and recombination proteins [BR:tros03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      130562778 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      130562778 (ddb1)
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd CPSF_A Beta-prop_RSE1_1st Beta-prop_RIG_2nd
Other DBs
NCBI-GeneID: 130562778
NCBI-ProteinID: XP_057204005
LinkDB
Position
LG12:complement(1922498..1946844)
AA seq 1140 aa
MSYNYVVTAQKPTAVNACITGHFTSADDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVQFLYGCQAPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGAVVLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLSVDSNDQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSESGRD
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFFCGKVAHQQLIQITSVSVRLVT
QDTKALVSEWKEPQGRNISVASCNSTQVVLAVGRVLYYLQILTGELKQISSTEMEHEVAC
LDITPLGDSGGESSICAVGLWTDISARLLKLPCFSPLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDIQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PKRICYQEVSQCFGVLSSRVEMQDASGTTAAMRPSASTQALSSSMSSSKLFPSSTAPHET
SFGEEVEVHSLLVVDQHTFEVLHGHQFLQNEYALSMVSCKLGRDPAVYFIVGTAMVYPEE
AEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGSFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFSHGSLVLQNLGES
STPTQGSVLFGTVNGMIGLVTSLSESWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLGRAKMQEVVSTLQIDDGSGMKREATVDEVIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtggtgacggcgcaaaagcccacggctgtgaacgcgtgtatcacg
ggtcacttcacatcagccgatgatctgaacctgttgatcgcgaagaacactcgtctggag
atctatgtggttaccgctgagggtctgcggcctgtcaaggaggtcggcatgtacggcaag
atcgcagtcatggagctcttcagaccaaagggcgagagtaaagatcttttgttcattttg
actgccaaatacaacgcctgcatcctggagtacaagcagaatggagacagtatcgatatc
atcacccgtgctcatggcaatgttcaggaccggattgggcgtccatcagagacaggtatc
attggtatagtggatccagaatgtcgtatgatcggcttgcggctctatgacggcctgttt
aaggtcatcccactggatcgtgacaaccgtgagctgaaagcgttcaacatccggctggag
gagctacaggtcatagatgtacagttcttgtacggatgtcaggcgcccacagtctgtttt
atataccaggatccccagggtaggcatgtgaagacgtacgaggtctctctcagggagaaa
gaatttaacaaagggccctggaaacaggagaatgtggaagcggaagcatcaatggttatt
ccagtccctgagccgtttggtggtgctataattattggacaggagtcgatcacttatcat
aatggagacaaatacttagccatcgctcctcctactattaagcaaagcaccattgtttgt
cataaccgtgtggatcccaatggctcgcggtacctgctgggagatatggagggccgactc
ttcatgctgctgttggagaaagaagagttgatggatggagctgtagtgcttaaagacctg
cgagtcgagctgttaggagagacctctatcgctgagtgtctgacatacttggataatggt
gtggtgtttgtgggttcgaggcttggagattctcagttagttaagctgagtgtggacagt
aatgaccaaggttcatatgtggctgtcatggagaccttcactaacctgggacccatagtg
gacatgtgcgtggtggaccttgaaagacaaggacaaggccagttggtgacctgctccgga
gcgtttaaggaaggctcgctgaggattattcgcaatggcataggaatacatgagcacgcc
agcatcgacctgcctggaatcaaaggactgtggcctcttcgctcagagtcaggcagagac
actgatgacatgcttgttctgtcttttgtgggtcagaccagagtgctgatgttgagtgga
gaggaggtggaggagactgaacttccagggtttgtggataatcagcagacgttcttctgt
gggaaagtagcacaccagcagctcatacagatcacgtcggtgtccgtgcggctggtcact
caggacacaaaggctctggtgagcgagtggaaagagcctcagggcaggaacatcagcgtg
gcgtcctgtaacagcacacaggtggtgctggccgtgggccgggtgctctattatcttcag
atactaacaggagaactcaaacagatcagctctacagagatggagcacgaggtggcatgt
ttggacatcactcctctgggtgacagcggaggagagtccagcatttgtgctgtgggactt
tggacggacatctcggcacgtctgctcaagttaccctgcttcagcccgctgcataaagag
atgctgggtggagagatcatacctcgctctatcctcatgaccacatttgagggcagtcat
tacctgctgtgcgctctgggagacggggcactcttttactttggattggacattcagaca
ggtgttttaagtgaacggaagaaagtgactctcggcacacagccaacggttctgcgcacg
tttcgctctctctccacatccaatgtgtttgcctgttcggacagacccaccgtcatctac
tccagtaaccacaagttggtcttttctaatgtcaatctgaaggaggtgaactacatgtgc
ccgctcaactctgagggctaccctgacagtttggctctggctaataacagcactctgacc
atcggcaccattgatgagatccagaaactccacatccgaactgttcctctctacgagtca
cccaagcggatctgttatcaggaggtgtctcaatgttttggagttttgtccagcagagta
gaaatgcaggacgccagtggaaccacagcagccatgcggcccagcgctagtacacaggca
ttgtccagcagcatgagctccagtaagctgtttcccagcagcactgctcctcatgagacg
tcttttggagaggaagtggaggttcacagtttactggtggttgatcaacacacatttgag
gtgctgcatgggcatcagttccttcagaatgaatacgctctgagcatggtctcctgtaag
ctgggcagagatcctgctgtttatttcatagttggcacagcaatggtgtatccagaggag
gcggagcctaaacagggccgcatcatcgtctttcactatacagacggtaaactgcagacg
gttgcagagaaggaggtgaaaggagctgtttactcgatggtggagtttaatggcaaactg
ttggccagcatcaacagcactgtgcgtctgtacgagtggactgcagagaaggagctgcgc
actgagtgtaatcactataataacatcatggccctgtatctgaagactaaaggagatttc
atactggtgggcgacctgatgcgctccgtgctgctgctggcctataaacccatggaggga
agctttgaggagattgcacgtgactttaatccaaattggatgagtgccgttgaaatcttg
gatgatgacaacttccttggagcagagaatgcgttcaacttgtttgtctgccaaaaagac
agtgcggcaactacagatgaggagagacagcacctgcaggaggtcggcttgtttcatctg
ggagagttcgtcaatgtgttttcacacggatctctggttctacagaacctgggcgagagc
tctactcctacccagggttctgtgctcttcggcactgttaacggaatgattggtttggtg
acgtcactttcagagagctggtacagtttactgctggacctccagaacagactcaacaag
gtcatcaagagtgttggcaagattgagcacagcttttggaggtcattccatacagagcgc
aagactgagcaagccacaggtttcatagatggagatcttattgagagcttcctggatttg
ggtcgtgccaagatgcaagaggtggtcagcacactgcagattgatgacggtagtggaatg
aagcgggaagctacggtggacgaggtcattaagattgtagaggagctcacgcggatccac
tag

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