Triplophysa rosa: 130562826
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Entry
130562826 CDS
T09216
Symbol
ctcf
Name
(RefSeq) transcriptional repressor CTCF isoform X1
KO
K23195
transcriptional repressor CTCF
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tros03000
]
130562826 (ctcf)
03036 Chromosome and associated proteins [BR:
tros03036
]
130562826 (ctcf)
Transcription factors [BR:
tros03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
130562826 (ctcf)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130562826 (ctcf)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-H2C2_2
zf-C2H2
zf-C2H2_4
zf-C2H2_16
zf-H2C2_5
zf-C2H2_jaz
zf-C2H2_REST
zf-met
zf-C2H2_7th_ZNF462
zf-C2H2_ZN142
zf-C2H2_6
Zf-C2H2_ZNF451_C
zf-C2HE
Zf-C2H2_ZNF451
zf-C2H2_15
Motif
Other DBs
NCBI-GeneID:
130562826
NCBI-ProteinID:
XP_057204082
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All DBs
Position
LG12:complement(16144341..16153139)
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AA seq
859 aa
AA seq
DB search
MRNSRSRPPFCAEPTLQKRERIKTAGGEGRSFTPSRTEGRTNPELSVEFNARINHQTQVI
PMEEGPIEAVVEEAGDAFKAKECKTYQRRREDEEVGAQLLQAAELEQAQAEAEAVVEAQQ
QLVEGVVNVNSMMVMESLDPALLQMKTEVMEAAVGAPVGVAGAAHEATVTTVDDTQIITL
QVVNMEEQQLGLGELQLVQVPVSAVPVTAATVEELQGTLMDDATAMPKDGEPVICHTLPL
PEGFQVVKVGANGEVETVEQDELQAQEEQPQQQVEEEMAEAQADDPTWAKDPDYTPPVKK
IKKAKKSKLRYNTEGDKDMDVSVYDFEEEQQEGLLSEVNAEKVVGNMKPPKPTKIKKKGV
KKTFQCELCSYTCPRRSNLDRHMKSHTDERPHKCHLCGRAFRTVTLLRNHLNTHTGTRPH
KCTDCDMAFVTSGELVRHRRYKHTHEKPFKCSMCDYASVEVSKLKRHIRSHTGERPFQCS
LCSYASRDTYKLKRHMRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHC
DTVIARKSDLGVHLRKQHSYIEQGRKCRYCDAVFHERYALIQHQKSHKNEKRFKCDQCDY
ACRQERHMVMHKRTHTGEKPYACNQCDKTFRQKQLLDMHFRRYHDPNFVPTSFVCTKCGK
TFTRRNTMARHADNCTGMESADGENGTPPKRGRVGRKRKMRSRKDDDDDSDEHGEPDLDD
IDEEDEDEEIFDDDDDDHMDVEQAPPSVPIPAPAEPPVKRKRGRPPKNAPKFSPATPSPK
TTAATAAIIQVEDESTGAIENIIVKKEPEGTDPVPVPAQPVVEELEAVEAGVETVQIAVP
EAAPNGDLTPEMILSMMDR
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaacagccgctcaaggccgccattttgtgcggagcctactctgcaaaagcgggag
aggattaaaaccgccggaggtgaaggacgcagttttactccgtctcgtactgaaggaaga
acaaaccctgagctttctgtcgaattcaacgcgagaataaatcaccaaacgcaggtaata
cccatggaagagggaccgattgaggcagtggtggaagaggcaggggatgctttcaaggca
aaagaatgtaagacataccaaaggcggcgagaggatgaagaggtgggagctcaactgctg
caggctgccgagttagagcaagcccaggctgaagcagaagctgtagtggaggcccaacag
caactggttgaaggtgtagtgaatgtcaacagcatgatggtgatggagtccctggaccct
gccttgcttcagatgaagacagaagttatggaggccgctgttggagcaccagttggtgtg
gccggtgctgcccatgaagccactgtcaccactgtggatgacactcagatcatcaccctg
caggtggtaaacatggaagagcagcagttggggttaggagagctgcagctggtgcaagtg
cctgtttctgctgtgcccgtcaccgcagccactgtggaagagctacagggaacgctgatg
gatgatgctactgccatgcctaaagatggagagcctgtcatctgtcacaccctgccgctg
cctgagggttttcaggtggtcaaggtgggtgcaaatggagaggtggagactgtggagcag
gatgagctccaggcccaagaagagcagcctcaacagcaggtggaggaggagatggctgaa
gcccaagctgatgaccccacctgggctaaagatccagactacacaccccctgtcaaaaag
atcaagaaggcaaagaaaagcaaactgcgctacaacacagagggagataaggacatggat
gtgtctgtttatgactttgaggaggagcagcaggaaggactgctgtctgaggtcaatgct
gagaaagttgtgggcaacatgaaaccacccaaaccaactaaaatcaagaagaagggtgtt
aaaaagacattccagtgtgagctgtgtagttacacttgcccacgacgctccaatctggac
cgccacatgaagagccacacggatgagagacctcacaagtgccatctgtgtgggcgagcc
tttaggaccgtcaccttgctaaggaaccacctcaacacccatacaggcaccagaccacat
aagtgcactgactgtgacatggcctttgtcaccagtggagagttggtgcgacacagacgc
tacaagcacactcacgagaaaccattcaagtgctccatgtgtgactatgccagtgtggag
gttagcaagctgaagcgccacattcgctcacacaccggagagcgtcccttccagtgcagc
ctgtgcagttatgccagcagagatacctataaactgaagaggcacatgaggacccactct
ggagagaagccctatgagtgctacatctgtcatgcacgtttcacccagagtggtaccatg
aagatgcacatcctgcagaagcacacagagaacgtggctaagtttcactgcccccactgt
gatacagttattgcccgcaagagtgatctcggtgtacatctccgtaagcagcattcctac
attgagcagggcaggaagtgccgttactgcgatgcagtgtttcatgagcgttatgccctc
atccagcatcagaaatcccacaaaaatgagaaacgattcaagtgtgaccagtgtgactat
gcatgccgccaggagcgtcacatggtcatgcataaacgcacccataccggggagaagcca
tacgcgtgtaaccaatgtgataagacattcaggcagaaacagctcctggacatgcacttt
aggcgctaccatgaccccaactttgtaccaacgtccttcgtatgcaccaagtgtggcaag
actttcactcgccggaataccatggccaggcatgcagataactgcactgggatggaatct
gctgatggagaaaatggaactccacccaagagaggtcgtgttggcagaaagaggaagatg
cgctctagaaaggatgacgacgatgacagtgatgagcatggagagcctgatctggatgat
attgatgaagaggatgaggatgaagagatttttgatgatgatgatgatgatcacatggat
gtggaacaggctccacccagcgttcccatccctgctcctgctgaacctcctgtcaagagg
aaacggggcagaccccccaagaatgcacccaagttttctcctgccacgcctagtccaaaa
accactgcagctaccgctgccataatccaggtggaggatgaaagcacaggggccattgag
aacatcattgtgaaaaaggagcctgaaggcactgatccagttcctgtacccgcccagccg
gtggtggaggagctagaggcggtcgaggctggtgtagaaacagtgcagatagccgtccct
gaagctgcacctaacggtgacctaactcctgaaatgatccttagcatgatggaccggtga
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