Triplophysa rosa: 130563112
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Entry
130563112 CDS
T09216
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tros03009
]
130563112 (ighmbp2)
03012 Translation factors [BR:
tros03012
]
130563112 (ighmbp2)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130563112 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
130563112 (ighmbp2)
Ribosome biogenesis [BR:
tros03009
]
Eukaryotic type
Other ribosome biogenesis factors
130563112 (ighmbp2)
Translation factors [BR:
tros03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
130563112 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
DEAD
Viral_helicase1
ResIII
AAA_22
nSTAND3
Flavi_DEAD
AAA_16
UvrD-helicase
PhoH
Helicase_RecD
NPHP3_N
SRP54
AAA_7
Herpes_ori_bp
AAA_25
cobW
IstB_IS21
Zot
AAA_33
UvrD_C_2
SLFN-g3_helicase
ABC_tran
AAA
Motif
Other DBs
NCBI-GeneID:
130563112
NCBI-ProteinID:
XP_057204511
LinkDB
All DBs
Position
LG12:16869484..16875447
Genome browser
AA seq
1003 aa
AA seq
DB search
MEVEEFVSKTLELLQEEREAELEEARAWQENVSLKTLQQKGVCLLKLQVASQHTGMYGRL
LVIFEPRKSIGPSVLPSKTFGPGDIVGLYQSEGQGQPSQLGSGVVTRVTQTSLTVAFDDT
QDGINLDRDGLYNLMKLANDVTYKRLTKALKSLNSYSGGPASHLISVFFGYSEPGTISHQ
HALEFSNTGLDHSQKEAVAFAISQKDVAIIHGPPGTGKTTTVVEVILQAVKQEQKVLCCA
PSNVAVDNLVERLVRSKVKVLRLGHPARLLESIQKHSLDAVLAHSDNTNIIADIRKDMDK
ALSERRKARDKGQRSNMRREIGELRRELRSREETAITQILKRADVILATNTGAADNGPLK
HLPNDHFDMVVIDECAQALESSCWIALLKARKCILAGDYKQLPPTIKSQSAASKGLSVSL
MERMIKKYGDSVVRMLTTQYRMNSAIMQWASEQMYEGKLIAHQSVEKHLLRDLVGVADVE
DTRIPLLLIDTAGCGLSEMEDTDEQSKGNQGEVDIVALHIKALTGAGLQVKDIAVIAPYN
LQVDLLREKLSHKHAELEIKSVDGFQGREKEAVVLSLVRSNRRGEVGFLAEDRRINVAVT
RARRQLTVVCDSQTVRNHDFLKSLVDYMSEHGEVRTAFEYLEDCVPQNYTRESKDKQLGI
KDALSTKQKSKNQGKKPEQEQKKNANKSKGESQNNARSGQQNQASNSHHPEPRDAEQTQS
KRQEIKEQILDFLKDQNKKELQFSSSLNSHERLLVHEISEELGLKHESHGEGKKRHVTVS
RSQSASENPEKEPETQPAEVTASAAGVLDGEKSEKPSQSAVDLKSLHMERMRREMEKREE
RKQQKQESVKLESNLNASKSQSVKKSKGTTKGSTKMKAGAVDIAAAATGDDDFDALIEAV
VKADSVCGFVKCKASVLTLGQLCIYCNRQYCLSHHIPEVHGCGDKAKSQARMRISKEGVL
YAGSGQKDKSMDPNKKAHLQRKLDSKLKGMASHRKTKAKDKEQ
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaggttgaagaatttgtttccaagacacttgagctcctgcaagaggagagagaagcg
gagttagaagaagcacgggcatggcaggagaacgtatctctcaaaaccttacagcaaaag
ggagtgtgcctgctgaaacttcaggtcgcaagccagcacactggcatgtatgggaggctt
ttggtcatttttgaacccagaaaaagtataggaccctcagttcttcccagcaaaacattt
ggacctggtgacattgttggtttgtatcaatcagaaggtcagggtcagccgtctcagttg
ggttcaggagtggtgacacgtgtcactcagacatccctgacagtggcttttgatgacaca
caagatggtatcaacttggacagagatggactttacaatttgatgaagctggcgaatgat
gtcacgtacaagcggctcacaaaggccttaaagtctttaaattcatacagtggtggtcct
gcatctcacctgatcagcgtcttctttggttactcagaaccagggaccatatcacatcaa
catgcattggaatttagcaacacagggttagatcattctcagaaggaggctgtagcgttt
gcaatttctcagaaagatgtggcaatcatacatggaccaccagggactggcaaaaccacg
acagtggttgaagttatcctgcaggcagtaaaacaagaacaaaaggtcctttgctgtgcc
ccatctaacgtggctgttgataacttggtggagcgtctggtgagaagcaaggtcaaagtt
ttaagattgggtcatccagcacgcctgcttgagtctattcagaaacactcactggatgcc
gtgcttgcgcacagtgacaacaccaacatcatcgctgatattcgaaaggacatggacaaa
gctttgagtgaaaggaggaaggcccgtgacaagggccagcggagcaacatgaggcgagaa
atcggggagctgcgtcgagagctcaggtccagagaggaaacagcgatcactcagatcctg
aagagagcggatgttattctagcaactaacactggagcagctgataatggtcctctgaaa
catcttcctaatgatcattttgacatggtggtgatagatgagtgtgctcaggcgttagag
agcagctgctggatcgctcttctcaaagcacgcaagtgcatactggccggggattacaag
cagctgccacccaccatcaaatcacagagcgctgcatctaaaggcctctctgtgagttta
atggagcgtatgattaagaaatacggagattcagtggtccgaatgctgaccactcagtat
cgtatgaacagtgccatcatgcagtgggcttcagagcagatgtatgagggcaaactgatc
gcacaccagtcagtggagaaacacttgcttagagacctggttggggttgctgatgttgag
gacaccagaattcctcttttgcttattgacacagcaggctgtggccttagtgagatggaa
gacacggatgagcagtccaaagggaatcaaggagaagtagacattgtggctcttcatata
aaagctcttactggggctggacttcaagtcaaagacattgcagttattgcaccatataat
ctccaggtggatcttttgagagagaaactgtcccataaacatgccgagctcgagatcaag
tctgttgatggcttccagggccgagagaaagaggcagtggtgttgtcattggtcagatcc
aaccgtaggggtgaggttggatttcttgctgaagacagaaggatcaacgtggctgtgact
cgtgccagacggcaactcacagtagtgtgtgattctcagactgttcgaaaccatgacttc
ctcaaatccctcgttgactatatgtctgaacacggggaagttcggaccgcattcgagtac
ctggaagactgtgtgccacagaattacacccgtgaaagtaaagacaaacagctcggcatt
aaagatgctttatctacaaagcagaagtccaaaaaccagggcaagaaaccagagcaagaa
cagaagaaaaatgcaaacaagagcaaaggagagagtcagaacaatgctcggtctggtcaa
caaaatcaagcttccaactcacaccatcctgaacccagagatgctgagcagacccagagt
aagagacaagagatcaaggagcagatactagacttcctaaaggatcaaaacaagaaagaa
ctacagttttcttcctcgctcaattcccatgagcgtctgctggtccacgagatctctgaa
gagctgggattaaagcatgaaagtcacggagaggggaagaaacgtcatgtcactgtctcc
cggtcacagtcagcctcggaaaatccagagaaagagccagagacccaaccagcagaggtg
actgcaagcgctgcaggggtgctggatggagaaaaatcagagaaaccctcacagtcggcc
gttgatctgaaaagcctgcatatggagcgcatgcgtcgagagatggagaaacgagaagag
agaaaacagcaaaaacaagagagcgtgaaactggagtcaaatctcaatgccagtaaaagc
cagtcggttaagaaatctaaaggcacaaccaaaggaagtactaagatgaaagcaggagca
gtggatattgctgcagctgccacaggagatgatgattttgacgctcttatcgaagctgtg
gtgaaggcagacagcgtatgcggctttgtcaagtgtaaagccagcgtcctcacattagga
cagctctgcatctactgtaacagacaatactgtctgagtcatcatatacctgaggttcac
ggatgtggcgacaaagcaaaatctcaggctagaatgaggatcagtaaggagggggtgctg
tatgccggaagtggacagaaggacaagtcaatggacccaaataaaaaagcacacctgcag
agaaaacttgactccaaactcaaaggaatggcatctcacagaaaaaccaaagctaaggac
aaagaacaataa
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