Triplophysa rosa: 130563496
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Entry
130563496 CDS
T09216
Symbol
si:ch73-233f7.1
Name
(RefSeq) protocadherin beta-15 isoform X1
KO
K16499
protocadherin delta 2
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tros04515
]
130563496 (si:ch73-233f7.1)
Cell adhesion molecules [BR:
tros04515
]
Cadherins
Protocadherins
130563496 (si:ch73-233f7.1)
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Cadherin_tail
Motif
Other DBs
NCBI-GeneID:
130563496
NCBI-ProteinID:
XP_057205030
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All DBs
Position
LG13:22456710..22466183
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AA seq
1006 aa
AA seq
DB search
MDRWLTRKRWTLTGQVVFLLLCACALDRVLAQIRYSIPEELEHGAFVGNIAEDLGLDVAK
LSSRRFRIVSGARKQYLEVNLENGILFVNEKIDREELCEQSPVCFLYLQVVIENPLELYR
VEVEILDVNDNAPSFPWSEFNLEITESAAPGSRFPLESAQDLDVGSNSLRSYLLSSNHHF
VLDIQTRNDGSKFAELILQVPLDREKQKTHEMVLTAVDGGSPLRSGTAQITVTVLDANDN
VPVFDRSVYRVSLVENPPRGTLVLKLNATDLDEGANGEITYSFSGHAPLKVRELFSVDSH
SGEIRVKGIVDYEKASVYELYVQAKDKGPSAVAVHCKVLVDILDVNDNAPEVILTSVSTP
VQEDAPPGTVIAVISVMDRDSGENGAVDCQVPGNVPFQLHSSFKNYYTLVTSEFLDRESV
TEYNITLTARDLGSPPLSTRKTILVQVSDINDNPPRFIQPSYTVYVTENNAPGASICSVT
AFDPDSNQNAYLSYSILEGQIQGMPVSTYVSINSDNGNIYALRSFDYEQLRNFQIRVQAQ
DAGFPPLSSNVTVNVFVLDQNDNAPVILSPLPKNGSVANEVVPRSVDAGYLVAKITALDA
DAGQNSRLSYQVLQATDPGLFSVALYTGEIRTIRRLVDKDATRQRLVILVKDNGQPPLSA
TVSIILSVVDNVPESLSEFGDLSLSPQPSSNLALYLIVSLSTVSLIFLVAIIVLAAVKCY
KDRDSLGGYALSSLSAACCSFESEPPAEVFKKSNINLQISAGAKVPTNCVEVNRNTGNLS
QAYCYKVCLTPESAKSDFMFLKPCSPGTPRNNATKGADNLALSSQSRCSSVNNGATTPNE
LKQANTDWALMKNQTSSLKSCNSINMDGTVMRKAMQAEPENYSQMATGQYWTWGNRSREY
RMHSPAGGVSQRVWTPHYTPPHNPTHHPQQPTAQAPPHPPPDYQHNVYIPGTPSGFCTLR
PSYRSELDVHNSFSTFGKKRRFISPSSFDPCDDTGAEVINNDLYNE
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaccggtggctaacgaggaagcgatggacgttgactgggcaggttgtctttttgctc
ttgtgtgcgtgcgcactggaccgggttttggcgcagattcgatattccattcccgaggag
ttggaacacggggcttttgttgggaatatcgctgaagacttgggtttggacgtggccaaa
ttatcttcaaggagatttcggattgtgtccggggcaagaaaacaatatttagaggtgaat
ttggagaacgggattttgtttgtgaatgaaaagattgaccgcgaggagctctgtgaacaa
agtcctgtttgtttcttatacttgcaagtcgttattgagaaccctttggaattgtaccgg
gtagaagttgaaatcttagacgtcaatgacaacgctcccagttttccgtggagcgagttt
aatctagagatcacggagtccgctgcgccggggtctcggttcccgctggagagcgcgcag
gatcttgatgtgggctcgaactctcttcgctcgtacttgctgagctccaatcatcacttt
gtgcttgatattcagactcgtaacgacggcagcaaattcgccgaacttattctgcaggtg
ccgttagaccgagagaaacaaaagacgcacgagatggtgctcactgctgtggacggtggc
tctcctttgcgctcgggcacggctcagataacggtcactgtgctggatgcgaatgataac
gtaccggtgttcgaccggtccgtatatcgggtcagcttggtggagaatccaccgagaggc
acgctcgtgctcaaactgaacgccacggacctggacgaaggagccaacggtgagattacc
tattcgttcagcgggcacgcgcctctgaaggtgcgagagctgttcagcgtggactctcat
tcgggcgagattcgggtgaagggaatagtggactacgaaaaggccagtgtgtatgagctc
tacgtgcaggcaaaagacaaaggtccttcagctgtggctgtgcactgtaaagtactggtc
gatattctagacgtgaacgacaatgcgcccgaggtcatattaacctctgtgtcaacacct
gttcaggaggacgcgccaccgggcacggtgatagccgtaataagcgtaatggaccgtgac
tctggtgagaacggggctgtcgattgccaggttcccggtaacgtgcctttccagctgcac
tcctcttttaaaaactactacacacttgtaaccagcgagtttctggacagagaatctgtc
accgagtacaacatcaccctgaccgctcgagatctgggctcgccgccgctgtccaccagg
aaaacgattttagttcaagtgtctgatattaatgacaaccctccgcgtttcatccagccg
tcctatactgtgtatgtgaccgagaataacgccccgggcgcatccatttgctcggtgacc
gcattcgatccagactctaaccaaaacgcctatttgtcctactccatactggagggtcag
attcagggcatgcctgtgtccacttatgtctcgatcaattcagataacggaaacatatac
gcgcttcgctctttcgattacgaacagctccgaaacttccagatacgcgtacaggcgcaa
gacgcgggcttccctccgctcagcagcaacgtgaccgtcaacgtctttgttttggatcag
aacgacaacgcacctgtcatcctctccccgctaccgaaaaacggtagcgtagctaatgag
gtggtgcccaggtcggtggacgcaggttatcttgtggctaaaatcacggcactagacgcg
gacgcagggcaaaactctcgcctatcatatcaggtgctccaggcgaccgatcccggactg
tttagcgttgcgttatacaccggcgagataaggacgatccgccgcttagtggacaaagat
gccaccaggcaaagacttgttatacttgtcaaggacaacgggcagcctccgctctcggcc
accgtgtccatcattttgtcggtggtggacaacgtgccggagtcgctgtccgaattcggt
gacctctcgctcagcccgcagccgtcgtctaatctagcactctatttaatcgtgtcactg
agcacggtctcgctcatcttcctggtggccataatcgttttggcggctgtgaaatgctac
aaggatcgagattcgctcggcggttacgcgctctcctcgctcagcgccgcctgctgcagc
tttgaatcggagccgcccgctgaggttttcaaaaagtctaacatcaacctgcaaatctcc
gccggcgcgaaagtacccacgaactgcgtggaggtaaacagaaatactggaaatctctct
caagcttactgctacaaagtgtgtttgacgcccgaatctgcaaagagcgactttatgttt
cttaagccttgcagtcccggcacgccgagaaataacgcgacgaaaggagcggataacctg
gcgctgagctcacagagccgctgctcgtccgtgaacaacggtgcgactacaccaaacgag
ctgaagcaagcaaacacagactgggccctcatgaagaaccaaacctcttctctgaaaagc
tgtaactctataaacatggacggcactgtaatgcgtaaggccatgcaggcagaaccagaa
aattatagccaaatggccacaggacagtattggacatggggaaaccgctcaagagagtac
cggatgcattctccagcaggtggggtctctcagagggtgtggacccctcattacacgcct
ccacataaccccacccatcatccgcagcagcccacagcgcaggcacccccgcaccctccg
ccagactaccagcataacgtctatatccccggcacgccatccggcttctgtaccctgcgc
ccaagttaccgcagcgagcttgacgtccacaactcattctccacctttggaaagaaacga
aggttcatctcacccagcagctttgacccgtgtgacgacacaggggcagaggtcatcaac
aatgacttatataacgaataa
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