Triplophysa rosa: 130564037
Help
Entry
130564037 CDS
T09216
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tros
Triplophysa rosa
Pathway
tros03040
Spliceosome
tros04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130564037 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130564037 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tros03041
]
130564037 (prpf19)
04121 Ubiquitin system [BR:
tros04121
]
130564037 (prpf19)
03400 DNA repair and recombination proteins [BR:
tros03400
]
130564037 (prpf19)
Enzymes [BR:
tros01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
130564037 (prpf19)
Spliceosome [BR:
tros03041
]
Complex B
Other components
Prp19 complex
130564037 (prpf19)
Complex C
Prp19-CDC5 complex
130564037 (prpf19)
Ubiquitin system [BR:
tros04121
]
Ubiquitin ligases (E3)
U-box type E3
130564037 (prpf19)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
130564037 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_EML
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_HPS5
PEP5_VPS11_N
WDR90_beta-prop_4th
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_Vps41
U-box
Beta-prop_SPT8
WD40_RFWD3
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF12
Nucleoporin_N
zf-Nse
Cytochrom_D1
Cep57_MT_bd
ATG16
Motif
Other DBs
NCBI-GeneID:
130564037
NCBI-ProteinID:
XP_057205891
LinkDB
All DBs
Position
LG13:complement(2932294..2976928)
Genome browser
AA seq
505 aa
AA seq
DB search
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGADPINGQPLSEEQLIDIKVYHP
IRPKAPSATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAAPASQPAAVGAGSEPMEISELVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVATHAGLHSASIPGILCLDLCPTDTNKVLT
GGADKNVVVFDRREEQIVATLKGHTKKVSSVICHPTQSVVFSASPDSTIRVWSVTGANCV
QLIRAHEAGVTGLSLHATGDYLLSSSEDQYWAFSDIHTGRVLTKVTDETAACALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTAIAFSENGYYLATGAQDSSLKLW
DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GVAFGEHAQFLASTGMDRSLKFYSL
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgtctcttgtttgtgcgatctcaaatgaggtaccggagcacccctgcgtctctcctgtg
tccaaccaagtgttcgagagacgtctgattgagaagtacatcgcagagaatggagccgat
cccatcaatggacaaccgttgtctgaagaacagctcatagacataaaggtctatcacccc
attcgaccaaaggctccatctgccacaagtattcctgctatccttaaatctctgcaggat
gaatgggatgctgttatgctgcacagtttcactctgaggcagcagttgcagaccacgcgt
caggagctgtctcatgctctctaccagcacgatgcggcctgcagagtcatcgcgcgtctt
acaaaagaggtcactgcagccagagaggccttggctacactcaaacctcaggctggactt
gttgctccgcaggctgctcctgcttcgcagcctgctgctgtgggtgctggtagtgagccc
atggagatcagtgagctagttggaatgactccggagatcatacagaagctccaagacaag
gccactgtcctgaccacggaaagaaagaagagaggaaagactgtgccagaggagctggtc
agagcagaagatctcagcaagtatcggcaagtggccactcatgctggtcttcacagtgcc
agtatcccaggaatcctctgtctggatctttgcccaacagacaccaacaaagtcctcact
ggtggagcagataagaacgttgtggtgtttgaccgtagagaggagcagattgttgccacc
ctcaaaggacacacaaagaaagtatcgtctgtcatctgccaccccactcagtcggtggtg
ttctcagcatctccagacagcaccatccgtgtgtggtctgttaccggggccaactgtgtg
cagctgatccgggctcacgaagcaggtgttaccggtctctctctgcatgctaccggagac
tatctactgagctcatctgaggaccagtactgggccttctctgatattcatactggccgt
gttctgaccaaagtcaccgatgagactgctgcatgtgcactgacctgtgctcagttccac
cctgacggtctgatttttggcactggcacagctgattctcagattaaaatctgggatctg
aaggaacggactaatgtagccaatttccctggtcattctggtcctgtgacagccattgct
ttttcagagaatggatactatctggccactggtgctcaggacagttcactgaaactgtgg
gatttgaggaagctcaagaattttaagacaattactttggataacaattatgaggtgaaa
tctctggtctttgatcagagtgggacgtatctggctgttggtgggtcagacattagagtt
tatatctgtaaacagtggtctgaggtcctcaacttttctgatcactctggtctggttact
ggtgtggcttttggtgaacatgcccagttcctggcttccactggcatggacagaagtcta
aaattctacagcctatag
DBGET
integrated database retrieval system
