Triplophysa rosa: 130564106
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Entry
130564106 CDS
T09216
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tros
Triplophysa rosa
Pathway
tros03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
130564106 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130564106 (polr1a)
Enzymes [BR:
tros01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
130564106 (polr1a)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
130564106 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
HMG_box_2
Nop14
HMG_box
Motif
Other DBs
NCBI-GeneID:
130564106
NCBI-ProteinID:
XP_057205977
LinkDB
All DBs
Position
LG13:complement(1783992..1798800)
Genome browser
AA seq
1703 aa
AA seq
DB search
MLFSKETPWRRLEGMSFGMLSSEEIRKLSVKTITNSLLLDNVGNAASNGLYDLALGPADN
KEICSTCMQDFKSCPGHFGHIDLPLPVYSPLFFDKLFLLIRGSCLVCQMLTCPRAAVHLL
LCQLKLLNVGALKEVYDVENVLNQFVDANPRASGVEIQVALEKFITPILKANGDNRQADP
MKHVCEKRVSLINNFWKIHMGSKKCPHCRASRAPLRREHNSKLIVTQSLSKADSELDDED
VPMAKRGYLTPSLAREHVIKLWEKEGFFLKHLFSGFDTGGSEKRFPEVFFLELVVVPPSR
FRPINRLGDQMFTNGHTVNMQAVLKDNFIVQKLLALIAAEKTKAIEDTQTELEQSNETTE
ISQVDQSFLMDIQGQTLTDKLYNIWIRLQTHVNIVFDSEMDKMMTDKYPGVRQVLEKKEG
LFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPVTSWNVKELRQAVLN
GPNVHPGASMVINEDGSRTILNSTNLTQREAVAKQLLTPSTGQHKIPMKIVNRHIKNGDV
LLLNRQPTLHRPSIQAHCARILPGEKVLRLHYSNCKAYNADFDGDEMNAHFPQSELGRAE
AYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGSSMTLRGCFFTRDQYTALIYRGLTDKVGR
VKLLTPALIKPVPLWTGKQVVSTLLLNVIPENSIPLNLAGKAKIPSKAWVKEPPRPVPGY
NPDIMCESQVIIRQGELLLGVLDKAHYGSSSYGLVHCCYELYGGETSGKLLSCLARLFTA
YLQLYRGFTLGVEDILVKKRANKQRRKIIQESVTCGSKALRAAFNLPESAAVDEARECWQ
DAHLNTDQRDFNMVDLKFKEEVNQVNNNINKVCMPAGLHRSFPENNLQLMVQSGAKGSTV
NTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYDPQPRSGGFVTGRFLTGIKPPEFFYH
CMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLDVP
KTQFLQPRQFSFIKDNYEVIRKSKCLDDILAKMDPQTANNHFNAIKKWKSKRERDSPRGG
AFLLYSQKKLAKLKAQSMSQELSNGRDCATLQLSEQWRNLDKSNRTKYLKKSSGCPDPCL
ALHRPDICFGSVSETFDNIVESYLNQYSVKKEFQTSSDVVDTERLKVLLQLKWQRALCDP
GEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILLIASSNIKTPMMSIP
VLMNKKAIKRVKALRKKLARVCLAEVLHKVDVTETLRMEGGKRKKSRVFKLAFHFLPPER
YQQDKQLDPQQILHFMEQRFFRLLLEAIKKLNAKLASLSALDTRRATPGNDDREVAATPD
REDAEGEDPGDNRVVDDEANEGDTDATDARMKAKQDEEVDYEGEDGEDEGSDEEHAEDEH
ADDRQEEAESSELPEEGSSGSTPQSQRNSASKQLHVDSQDEEMRINSVLRFSDVIEDYKY
DTEDGLWCELTMVLPVSKVHVDLTSVVVKLARNAVVMETKGIARCLLNEVTTKQGNKELM
LNTEGINMQELFKYTNILDLNRLYSNEIHAMANTYGIEVALKVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRFGIQSNSSPLQQMTFETSFKFLKQATMLGSYDKLTSPS
ACLVVGKVVKGGTGLFDLKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgttgttttctaaggaaacaccatggaggcgattagagggcatgtcgtttggcatgttg
tcctctgaagaaataaggaaactgagtgtgaaaaccatcaccaattccctgcttttggat
aatgtgggcaatgcggcatcaaatgggttgtatgatctggctctgggtccggctgacaac
aaagagatctgctccacctgcatgcaggactttaagagctgtcctggacacttcggacac
atagatctgcccctgcccgtctacagccctctgttctttgataaattgtttttgctcatc
cggggttcgtgcctggtgtgccaaatgttgacgtgtccgcgggcagccgtccatttactg
ctgtgccagctgaagcttctgaatgtgggagctttgaaggaggtttacgatgtcgagaac
gtcctcaatcagtttgtggatgccaaccctcgggcgtctggagtagaaatccaagtagct
ctggagaagtttattactcccatcctcaaagccaacggagacaatcggcaagctgacccg
atgaaacatgtctgtgaaaaaagagtctctctcataaacaatttctggaaaatacacatg
ggctcaaaaaaatgtccccactgcagagccagtcgagcgccgttgcgcagggaacataac
agtaaactgatcgtcacacagtcactttccaaagcagactcagaattagacgatgaggac
gtgccgatggccaaacgaggatacctgactccaagcttggcccgagagcatgttatcaaa
ctctgggagaaagaaggttttttcctcaagcatctgttctcagggtttgacacgggcggc
tcagagaaacgcttccctgaagttttcttcttagagctggtggtcgtccctccgtccagg
ttcaggcctataaatcggttgggagatcagatgttcaccaacggtcatacagtgaacatg
caggcagtgttaaaggacaatttcattgttcagaagttgctggcgctcatcgctgctgag
aagaccaaggctatagaagacacacagacagagctggagcagtccaatgagactacggag
atcagtcaggtagatcagtcctttctaatggacatccagggacagactctaacggacaag
ctctacaacatctggatccgtctacagactcacgtcaacattgtgtttgacagcgaaatg
gacaaaatgatgacagacaagtatcctggagtgcgtcaggtcttggagaagaaagaaggt
ttgttcaggaagcacatgatgggaaagcgtgtggattacgccgctcgctccgtcatttgt
cccgacatgtacatcggaaccaatgagattggaataccaatggtgtttgccaccaagctg
acgtacccgcagccagtgacgtcgtggaatgtgaaggaactcagacaggctgtgctgaac
ggacccaacgttcaccccggagcctccatggtcatcaatgaggacgggtcccgaacgatt
ctcaacagtaccaacctgacccagagagaagccgtagccaaacagctcctgacgcccagc
accggccaacacaagatccctatgaagatcgttaatcgacacatcaagaacggcgacgtg
ttgttgttgaaccgtcagcccactctccacagaccgtctattcaggcccactgcgctcgc
atcctgccgggagagaaagtgctgcgcttgcattactccaactgtaaagcctacaatgcc
gactttgatggagacgagatgaacgctcacttccctcagagtgaactgggaagagctgaa
gcttacacactagtgagcacagaccagcagtatttagtgcctaaagatgggaagccgttg
gctggtctgattcaggatcacatggtgtccggcagcagcatgactctccggggctgtttt
ttcacgcgggatcagtacacagcattgatctacagagggctgacagacaaggtcggcaga
gtaaagctcctcacccccgcgctcattaaacccgtgccactctggacgggcaaacaggtt
gtgtcaacccttttgctgaatgtcattcctgaaaacagcatccctttgaacctggcggga
aaggcaaagattcccagtaaagcctgggtgaaggaaccccccagaccagttccaggatac
aatccagacattatgtgtgaatctcaggtgatcattcggcagggtgaacttctgctgggt
gttttggataaagctcattacggcagctcttcttacggtctggtgcactgctgctatgag
ctgtacggaggagagaccagcgggaaactgctcagctgtctggctcgcctcttcaccgca
tacctgcagctgtaccgcggcttcacgctgggggtggaggacattctggtcaaaaagaga
gccaacaaacaaagaaggaaaataattcaagagtcagtcacatgtggttccaaggctctg
cgggcggcgtttaacctgcccgagtctgctgctgtggatgaagccagagaatgctggcaa
gacgctcatctgaacacagaccagagagatttcaacatggtggacctgaagttcaaagag
gaggtcaatcaagtcaacaacaacatcaacaaggtgtgcatgccagcgggtctccaccgc
tctttcccggagaataacctgcagctcatggtgcagtcaggagcaaagggttccactgtt
aacaccatgcagatctcctgtttgctgggtcagatcgagctggagggccgccggccgccg
ctgatgccttctgggaaatccctgccctgctttcagccctacgatcctcagccacgctcg
ggcggatttgtcactggtagattcttgacgggcatcaaacctcctgagttcttttatcac
tgtatggctggtcgtgaaggtctcgtggacacggctgtcaaaaccagtcgatctggttat
cttcagaggtgtgttatcaagcatctggagggtctggtggttcagtacgatctgacggtg
agagacagtgatggaagtgtggtccagtttctctacggggaggacggactggatgttccc
aagactcagttcttacagccgcgtcagttcagtttcatcaaagacaactatgaggtcatc
agaaaatccaagtgtttggatgacattttggctaagatggacccacagactgccaacaat
cattttaatgccataaagaaatggaaatccaaacgtgagcgtgattcaccccgaggcggg
gcgttcctgctttactcgcagaagaaactggccaagttaaaagctcaatcaatgagccaa
gaactgagcaatggaagagactgcgccactctacagctttcggagcagtggaggaatctg
gacaagtcgaaccggacgaagtatttgaagaagagctctggttgtccagacccgtgtttg
gctctccaccggccggacatctgcttcggttcagtatccgagacgtttgacaacattgtc
gagtcctatctgaatcagtacagtgtaaagaaagaatttcaaacgtcatctgacgtcgtt
gacacagagcgactgaaggttctgctgcagctcaagtggcagagagctctgtgtgatcca
ggtgaagctgtaggtctgctggccgctcagagcatcggagagccatccacacaaatgacc
ctcaacaccttccattttgccggcagaggcgagatgaacgtcacgctgggtattcccaga
ttacgtgagatcctcctgattgccagctctaacatcaaaacacccatgatgagtattcca
gttctgatgaacaagaaagccataaagcgggttaaagcgctgcggaagaaactagcccgt
gtgtgtttggcagaggtgcttcacaaggtggacgtgacagaaaccttgcgtatggagggg
ggaaagagaaaaaaatcaagggtcttcaaactcgccttccactttctgccccccgagcga
taccagcaggacaagcagctcgatcctcaacagattcttcatttcatggagcaaaggttc
tttcgtctgctcttagaggccattaagaagctgaacgctaaacttgcgtctctcagcgct
ctggacacgcgcagggccacgccgggtaatgacgatcgtgaagtggccgccaccccggac
cgagaggatgctgaaggtgaggatccaggtgacaacagggttgtggatgatgaggcgaat
gaaggagacactgacgcaacagatgccaggatgaaagctaaacaagatgaagaggtggac
tacgaaggtgaggatggggaggatgagggcagcgacgaagaacatgctgaagacgaacat
gctgatgacagacaggaagaggcggagtcttcagagctcccggaggaagggtccagtgga
agcacaccacagagccagagaaacagcgcttctaaacagctacatgttgattcacaagat
gaggaaatgcggatcaattcagtgctgcggttcagcgacgtcattgaagactacaaatat
gacacggaagatggactgtggtgtgagctgaccatggtccttcctgtcagtaaggtgcac
gttgacctgacatcagtggtggtgaaactggctcggaacgctgtggtcatggagaccaag
ggcatcgcacgctgcttactgaacgaggtcaccaccaaacagggtaataaagagctgatg
cttaacacggaggggatcaacatgcaagagctcttcaaatataccaatatcctggacctg
aatcgattgtactccaacgagatccacgccatggccaacacgtatggcattgaggtggcc
ctcaaggtcattgagaaggagatcaaagatgtgtttgccgtctatggcattgaggtggac
ccacgtcacctctctctagtggctgactacatgtgttttgagggagtttacaagcctctc
aaccgcttcggtatccagtccaacagttcacccctgcagcagatgacctttgagaccagt
tttaagttcttgaaacaggccacaatgctaggttcctacgataaactgacttcgccttca
gcttgtttggttgtagggaaagttgtgaaaggaggaacgggactcttcgatcttaaacag
ccattacagtaa
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integrated database retrieval system
