Triplophysa rosa: 130564496
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Entry
130564496 CDS
T09216
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
tros
Triplophysa rosa
Pathway
tros04382
Cornified envelope formation
tros04510
Focal adhesion
tros04512
ECM-receptor interaction
tros04518
Integrin signaling
tros04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130564496 (col4a3)
04518 Integrin signaling
130564496 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130564496 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
130564496 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
130564496 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tros04147
]
130564496 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130564496 (col4a3)
Exosome [BR:
tros04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
130564496 (col4a3)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130564496 (col4a3)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
130564496
NCBI-ProteinID:
XP_057206557
LinkDB
All DBs
Position
LG14:complement(21498322..21524729)
Genome browser
AA seq
1637 aa
AA seq
DB search
MTDGGCSCSGKSRCDCHGIKGDAGASGFPGLDGVQGVQGHRGKEGPPGIPGPKGNMGIPG
PPGIKGSRGSPGEAGYFGSPGLPGLHGKEGPRGTPGLPGCNGTKGEPGSPGIAGLKGYPG
QQGKPGIQGPKGDTLYFSPSEQVKGLCGFPGKEGVKGKPGSLGLLGPVGPGGPIGTPGIR
GTPGLQGEKGIEGRSIGIPGPRGQKGDRGLSGIPGDKGVKLFASGPKEPKGDLGDPGDPG
CIGLCGPPGPPGPEGEKGETGDPGGLGKNGLDGLEGEVGQPGVRGDPGYQGDIGIAGETG
LKGDTGPPGLPGEFIEVNGNVKGPKGFLGPPGRCGLRGSEGFLGFPGNPGPPGTAKPGPQ
GHPGPPGLRGVKGEQGEPAPYVSGPKGYDGPPGERGPLGDRGSPGTPNVFAHVGQGGLQG
EKGLKGPEGFHGDPGKPGKRGDLCMSCVIIDADPGHPGPRGDAGQPGDPGVVGNQGIKGS
QGDRGPEGQSGPQGSLGPQGLPGPPGSKGDMGSVIETGENGQKGNSGAAGPSGIHGRDGT
PGNPGYKGPPGAKGNLGPPGPKGNRGDPGLDGGPGIAGPTGNQGPVAVGQPGPSGEKGSL
GVVGQPGNPGERGEKGSPGLLQSMPGDPGMPGRRGTPGLPGSPGNTGDNGFQGFPGLAGL
KGVKGLSILGACGPTGPKGDKGVKGSSGPPGLGYIGRPGPPGSPGLPGTKGDTTFGSPGP
MGRQGLPGEEGTLGDSGDCGSPGPRGCPGQNGRDEPPGEHGAQGFDGLPGVEGLPGCCTA
GDIGDEGPLGLKGEDGHTGLKGPKGPQGETGQPGQGLPGPTGEVGIPGRNGETGLIGNQG
QKGFKGRDGLPGVPGQRGHQGSPGSTGPCGSDGNPGPPGPPGSKGLIGSNGVPGNIGQCG
TPGDRGAVGPKGEPTSMVSSGDPGDSGLPGILGLPGSKGDQGITGNYGACGKNGLQGDPG
PPGPPGDPGIRGLPGNPGIDGSCGNPGITGFPGLKGSKGSPGGHGEAGTPGWPGSDGPKG
IKGEPSQPGLGLPGVPGEQGEPGCPGNKGGKGDKGIFGNTGLQGLPGRPGEKGKTGVPGD
PGPPGPPGDNGLDGLPGAPGYRGPSGAPGIPGPCGDPGAPGPRGDQGRDGIPGPVGTKGD
RGPTVNANPGPPGYMGEKGNKGEPGPQGLCGPPGPCGPVGDLGPPGLPGDPGPRGCKGLA
GICIPGPKGDRGPMGPPGRQGFKGTGGPPGPPGPGMKGDKGVFGPLGHGGLPGCIGERGF
PGTPGRDGDPGYRGVKGEMGPLGCMGPNGQQGNCGPPGPPGSKGFKGSPGSKGPKGYDVV
PEVIRIPGDPGLPGLVGEKGPQGISGPQGLHGPPGTQGSRGDTGLVGLPGWPGNPGPRGD
FGPPGQEGAPGLSGEVGRKGAVGPQGPLANGTSDGFLFTKHSQKINVPPCPNGSRRLYDG
YSLLFIHGNNRGHGQDLGTLGSCMQRFSTMPFVVCNPDNTCRYASRNDYSYWLSTDKPIS
RDKPFISGDILEEYISRCAVCEAPANVIAVHSQTTKIPQCPAGWLSLWKGYSFVMQTGAG
AEGSGQSLVSPGSCLEEFRRIPFIECHGRGTCNFYPDSYSYWLASLDPDKMFSVPVRRTT
PQPTIISRCRVCMKLQP
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgactgatgggggctgttcttgcagtgggaaatcccggtgtgactgtcatggaattaaa
ggcgatgcgggtgcgtctgggtttcctgggctggatggtgtacaaggagttcaagggcat
cgaggaaaagaaggccctcctggaatccctggtccaaaaggaaatatgggaattccaggc
ccacccggaattaaaggttctaggggaagtccaggggaagcaggatactttggctcacca
ggccttcctgggctccatgggaaagaggggcctagggggactccgggtctcccaggatgc
aatggcacaaagggtgagcctggttccccaggcattgctggattgaagggatatcctggc
caacagggaaaacctggcatccaaggacctaagggagatactttatacttctctccgtct
gagcaagtgaagggactttgtgggtttccagggaaagaaggagtgaagggaaagcctggg
tcactggggttacttggaccagttggaccaggaggccctataggtacaccaggaatacgg
gggactccagggttgcagggagagaagggtatcgagggtcgaagcataggaatacctggg
cccagaggtcagaagggggacaggggtctgtctggcataccaggagacaaaggtgtcaag
ttatttgcatcaggtccaaaggagcctaagggtgacctgggtgatcctggagaccctggc
tgcattggactatgtggtcctcctggccctcctggtcccgagggggagaaaggggaaaca
ggggatcccggcggcctgggtaaaaatggtttggatggactagagggcgaggtcggccaa
ccgggtgtgcgtggagatcccggatatcaaggagatattgggatagctggggaaacgggt
ctgaagggtgacactggtccccctggtctccctggagagttcattgaagtaaatgggaat
gttaaaggtccaaaaggttttctcgggccaccaggacgttgtggcctcagaggaagtgaa
ggtttccttggctttccaggaaatccaggaccaccagggactgctaaacctggacctcaa
ggacatccaggtcctccagggttaaggggtgtaaagggggaacaaggagaaccagcacct
tacgtcagtggacctaaaggatatgatggaccaccaggagaacggggacccctcggtgac
cgtggatctccaggaacaccaaatgtttttgcccatgtgggacaaggagggcttcagggt
gagaaaggcctaaaaggccctgagggtttccatggagatcctggaaaaccaggtaagaga
ggagatctgtgcatgtcgtgtgtcatcattgatgctgaccctggacatccgggaccacgt
ggagatgctggtcaacctggagaccctggcgttgttgggaatcaaggtatcaaaggatct
caaggcgatcgaggcccagagggtcaatctggccctcagggttcattaggtcctcaaggc
ttaccagggcccccaggatccaaaggagacatggggtcagtaattgagactggggagaat
ggccagaaaggtaactctggtgctgcgggaccatctgggatacatggaagagatggcacg
cctggaaaccctggctataaaggcccaccaggagcaaaaggaaacctggggcctccagga
cctaaaggaaaccgtggagacccaggacttgatggaggacctggtatcgcaggtccaaca
ggcaaccagggacctgtggctgtgggccaaccaggcccatctggagaaaaaggaagcttg
ggagtcgtgggccaaccgggaaatccaggagaacgaggtgagaaaggatctccaggatta
ttacagtcgatgcccggagacccgggaatgcctggacgccgtggtacacctggtctacca
ggatctccaggtaatacaggtgacaacggatttcaaggattccccggactagctgggcta
aaaggagtgaaagggctgtcaatactgggagcttgtggacctactggtcctaaaggtgat
aagggtgtgaaggggagttcaggtccacctggtttaggatacataggccgccctggccca
ccaggatccccagggctgccaggaacaaagggtgacacaacattcggcagtccagggccc
atgggtcggcaggggctgccaggagaagaagggacccttggggattcaggagactgtggc
agtccaggaccacgtggatgtccaggtcaaaatggaagggatgagccaccaggagaacat
ggtgcgcaggggtttgatggcttgcctggagtggaagggcttccaggatgctgtactgca
ggggacataggtgatgaaggccccttaggactgaaaggagaagatggacacacagggctg
aagggtcctaaggggccacagggtgaaactggacaacctgggcaaggtttacctggtcca
acaggtgaggttgggatacctgggagaaatggagagacaggcttgattggtaaccaggga
cagaaaggtttcaaaggtcgagatggcttaccaggtgtcccaggtcaacggggacatcag
gggagtcctggaagcactggcccatgcggatcagatggaaatcctggacctcctggaccc
cctggatctaaaggtttaattggaagcaatggagtgccaggtaatataggacaatgtgga
acaccaggagaccgtggtgccgttggtcccaaaggagagccgacaagcatggtgtcttca
ggggatcctggtgactccggcttaccaggtattcttggtctccctggttctaaaggcgac
cagggaatcacaggcaactatggagcatgtggaaagaatggacttcagggtgatcctggt
ccaccaggtcctcctggtgaccctggcataagggggcttcctggaaatccgggtattgat
ggcagctgtgggaatccagggattacagggtttccgggcttgaaaggtagcaaaggttca
cctggtggtcatggggaggctgggactcctggttggccaggatctgatggaccaaagggg
atcaaaggtgaacccagccagcctggtctcgggcttccaggagtacctggtgaacagggt
gagccaggttgtccagggaataaaggtggaaagggtgacaagggtatatttgggaatact
ggtctccaaggtttaccggggcgtcctggggaaaaaggcaaaactggagttccaggagat
ccaggacctccaggacctcctggtgataatggtttagatggtcttccaggtgcacctgga
tatcgagggccgtctggtgcaccaggtattcctggtccgtgtggggatcctggagctccg
ggaccccgtggagatcaaggaagggatggtattcctgggccagttggaacaaaaggagat
agaggccccactgtcaatgcgaatcctggtccacctggttacatgggtgagaaaggtaat
aaaggcgaacccggacctcaaggattatgtgggccaccaggaccctgtgggccagttgga
gatcttggtccccctggtctgcctggagatccggggccacgtggatgtaaaggtttagct
ggaatctgcattcctgggccaaaaggggatcgaggaccaatgggaccacctggtcgacaa
ggtttcaagggaacaggtgggcctcccggtcctcctggtccaggaatgaagggagataaa
ggcgtctttgggccactgggccatggagggctgcctgggtgcattggtgagcgggggttt
ccaggaacaccaggtagagatggagatcctggctacaggggtgtgaaaggagaaatgggg
cctttgggttgcatggggccaaatggtcaacaaggaaattgtggcccacctggccctcct
gggtcaaaaggttttaaaggatctcctggatctaaaggtcctaaaggttatgatgtggtg
cctgaggtcatccgaattccaggagaccctggtttacctggcctagtcggtgagaaagga
ccacaaggaatatctggacctcaaggattacatggtcctccaggaacacaagggagtagg
ggagacacaggcctagttggtttacctggatggcctggaaaccctggcccgagaggagac
tttggtccaccaggacaggaaggtgctcctgggttgtctggcgaagtgggtcgcaagggt
gcagttggtccccagggaccattggcaaacggcacaagtgatgggtttctttttaccaag
catagtcagaaaataaatgtgccaccctgccccaatggatcgagacgtctgtatgatgga
tattctcttctcttcatccacggcaataaccgtggacatgggcaagatttaggaacgctg
ggaagctgtatgcagaggttttccaccatgcctttcgtggtgtgtaatcctgacaacacc
tgccgctatgcctctcgaaatgattattcctattggctgtctacagacaaaccgatatcc
agggacaaaccgtttatctctggtgacatactggaagagtacatcagcagatgtgcagta
tgtgaagcaccagctaatgtaatagcagttcacagccagacaacaaaaatcccgcaatgc
cctgcaggatggctgtctctgtggaaaggttactcctttgtaatgcaaacaggcgcaggt
gcagaaggttccgggcagtcactggtctctccaggttcgtgtttggaagagtttcggagg
attccctttatcgagtgtcatggccgtggcacctgtaacttctacccggattcttacagc
tactggctggcgtcgcttgaccccgacaaaatgttcagtgtaccggtccgtcggacaaca
ccacaaccaaccataatcagccgctgtcgggtctgtatgaagctgcaaccttaa
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integrated database retrieval system
