KEGG   Triplophysa rosa: 130564587
Entry
130564587         CDS       T09216                                 
Symbol
atg16l1
Name
(RefSeq) autophagy-related protein 16-1 isoform X1
  KO
K17890  autophagy-related protein 16-1
Organism
tros  Triplophysa rosa
Pathway
tros04136  Autophagy - other
tros04140  Autophagy - animal
tros04621  NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:tros00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    130564587 (atg16l1)
   04136 Autophagy - other
    130564587 (atg16l1)
 09150 Organismal Systems
  09151 Immune system
   04621 NOD-like receptor signaling pathway
    130564587 (atg16l1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:tros04131]
    130564587 (atg16l1)
   03029 Mitochondrial biogenesis [BR:tros03029]
    130564587 (atg16l1)
Membrane trafficking [BR:tros04131]
 Autophagy
  Autophagosome formation proteins
   Atg12 conjugation proteins
    130564587 (atg16l1)
 Others
  Specific organelles associated proteins
   Auto phagosome
    130564587 (atg16l1)
Mitochondrial biogenesis [BR:tros03029]
 Mitochondrial quality control factors
  Mitophagy factors
   Autophagy-related proteins
    130564587 (atg16l1)
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st WD40 ATG16 Beta-prop_THOC3 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd WDR55 WD40_Gbeta EIF3I Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_EIPR1 Beta-prop_ACSF4 Tricorn_2nd Beta-prop_NWD2_C eIF2A Beta-prop_IFT140_1st Beta-prop_WDR19_1st Ge1_WD40 Beta-prop_VPS8 Beta-prop_WDR41 Beta-prop_DCAF12 Beta-prop_SPT8 PUMA_CC KASH_CCD DUF6049 DUF4200 ADIP NET2A HALZ
Other DBs
NCBI-GeneID: 130564587
NCBI-ProteinID: XP_057206752
LinkDB
Position
LG14:complement(4283530..4296660)
AA seq 621 aa
MAGRRVECLWKRHVVEQLKQRDRVQRQAFEEIIHQYNRLLERSDLQAVFSERLQTDKYEQ
QNRHDLSPGVDGGRCDSLQQEMAQMRIKHQEELTELHKKRGELAQSVIELNNQIQHKDKE
IQSNEAKMLEYQQQISHLEGECRELRNSLADLERANQTLKDEYDALQITFNALEEKLRKT
TDDNQELVTRWMAEKAQEANKLNAENEKDSRRRQAKLQKELADAAKEPLPIEPDDDIEVL
SEDAGKGTGETSPSRQPSRTPSKRTSQPLPPAGLLDSITNIFGLSDSVHSGFIPSESRRR
RSVNSFGTSPETAEAPSMCTEVRVPSTALHIFDAHDGEVNAVRFSPGSRLLATGGMDRRV
KLWEVISGHCEPKGALTGSNAGITSIEFDSAGSYLLAASNDFASRIWTVDDFRLRHTLTG
HSGKVLSARFLLDNARIVSGSYDRTLKLWDLRSKVCMKTVFAGSSCNDIVCTEQCVMSGH
FDKKVRFWDIRSESIVRELELLGRVTSLDLNQDRSELLACSRDDLVKIIDLRSNAVRQTF
SAQGFKCGSDFTRVTFSPDGSYVAAGSADGVLYIWNVLTGKLDKTLDKGHSSAINSVSWS
PSGAYVASVEKGSKAVLWSDM
NT seq 1866 nt   +upstreamnt  +downstreamnt
atggcgggacgcagagtcgagtgcttgtggaagcggcatgtcgtagagcagctgaagcag
agagatagagttcagcgacaggccttcgaggagatcatacaccagtataaccgacttttg
gagaggtctgatcttcaggctgttttctctgaacgtctccagacggacaaatatgaacag
cagaacagacatgacctcagtccgggcgttgacggcggtcgctgtgattctctgcagcag
gagatggctcagatgagaatcaaacatcaggaggaactgacggagctacacaagaaacga
ggagagttggcccagagtgtcattgaactaaataaccagattcagcacaaagacaaagag
attcagagtaatgaagccaagatgctggaataccagcagcaaatctcgcatttggaagga
gagtgtcgtgagttgcgaaactctctcgccgacctggaacgagccaaccagacgctgaaa
gacgaatacgacgccctgcagatcacgttcaacgcgctggaggagaaattacggaaaaca
acagatgacaatcaggagctggtgacgcgctggatggcggagaaagctcaggaggccaac
aaactcaacgctgagaacgagaaggactccagacgcagacaggccaaacttcagaaggaa
ttagcagatgctgccaaggagcctcttcctatagagccagatgatgacatcgaggttctc
tcagaggatgctgggaagggaacaggcgaaacatcaccgagtagacagcccagtcgcaca
cccagtaaacggacgtctcagccgcttcctcctgcagggctgctggactccatcactaat
atctttggcctgtctgattctgtccactctggtttcatcccatctgagtccagaagacga
cgttctgtgaattcgtttgggacatctcctgagaccgccgaagcgccgtcgatgtgcaca
gaggtccgcgtgccctccactgcgctgcacatctttgacgctcatgatggtgaagtgaac
gctgtgaggtttagtcccggatctcgactgctcgccacaggaggaatggaccgccgagtc
aaactctgggaggtcatatcagggcactgtgaacccaaaggagctctgaccggaagcaac
gcggggatcaccagtatagagtttgacagcgcgggttcgtatcttctggccgcatctaac
gattttgctagtagaatctggactgtagatgacttcagactgcggcacacgctcacagga
cacagcgggaaggttctgtctgctcgttttcttctcgacaacgctcggatcgtctctggc
agttacgaccggacgctgaagctttgggacttacgcagtaaagtctgtatgaagacggtg
tttgcaggatccagctgcaatgacatcgtctgcacagagcagtgtgtgatgagcggacat
ttcgataagaaagttcgtttctgggacataaggtcagagagtatcgtgcgtgagctggag
ctgctgggccgcgtgacgtctttagacctgaatcaagaccgctcggagcttctcgcctgt
tcccgtgatgacctggtgaaaataatcgacctgcgcagtaacgcagtgcgacagacgttt
agtgctcaaggttttaagtgtggatctgactttaccagagtaaccttcagtcctgatggc
agttatgtggcagccggttctgcagatggagttctgtacatttggaacgttctaacagga
aaactagacaaaactctcgataaaggtcacagttctgccatcaattcagtgtcctggtct
ccgtcgggcgcgtacgtggccagcgttgagaaaggcagcaaggctgtgctttggtctgat
atgtga

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