Triplophysa rosa: 130564841
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Entry
130564841 CDS
T09216
Symbol
scaf4b
Name
(RefSeq) SR-related and CTD-associated factor 4b isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130564841 (scaf4b)
03041 Spliceosome [BR:
tros03041
]
130564841 (scaf4b)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130564841 (scaf4b)
Spliceosome [BR:
tros03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
130564841 (scaf4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
SR-25
AAA_11
RRM_occluded
RNA_bind
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
130564841
NCBI-ProteinID:
XP_057207237
LinkDB
All DBs
Position
LG14:19284630..19299398
Genome browser
AA seq
666 aa
AA seq
DB search
MDMDAVNAFNGEMLSMMDMPPPISRAKMMSVTKAGIKAIKLYKHAVQIVEKFIKRCKPDL
KVAGLYVVDSIIRQSRHQFGADKDVFGPRFLKNFSVTFQNLYECPVDDKEKILRVLNLWQ
KNDVFGMDIIQPLLDMATAPVLPVFENGTTVGVSLATPMSVPQLASASATAVTLPALQNP
VSPPTLHNPVAPPHLQNFIASPTVQNPVAPPALQNPGALAAVAQLLQGTQGLEQLLQSLQ
QSGGAGLSQSTAPPTEQKTSLAKSLLDRFDYDDDPEPVEENPEPAPTAPHALNLTLELQQ
ALQAHLLSQLANQSQEQVALQSLPAMVPNQIPNTLQNTVHTLDESSVPPSFQQPHVQNRF
QTTPLPEESAVKMDHSADDRDRRHRRSRSRSPQRSSTSRSRRSPSGSRSHRSRYHRTRSR
SKERRARSEERREREKERERRQKGLPSIRKEHLSVCSTTLWIGQLDKKTQKQDIMSLMEE
FGQVESINMIPPRGCAYVVMVHRQDAHTALNKLSRGTVKVNQKSIKIAWALNKGIKAEFK
KFWDVERGVTYIPWNKVKRDDIQSYRGGGMLDAETLKPEWNISVANPAVPVTGGPEGGQG
NGASLLTVSQSPTVQPVASGNIPPGPPPNMRLPPPAMITGAPLLAFPPPGFNPAKMPAGT
TTDLSS
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggatatggatgcggtgaacgcctttaacggggagatgttgtccatgatggacatgcca
cccccaatatctcgagccaaaatgatgtctgtaactaaagcaggaatcaaagctatcaag
ctttataagcatgctgttcaaattgtggagaagttcatcaagaggtgtaaaccagatctg
aaggtcgctggtctctatgtggtcgattcgatcatcagacagtctcgccaccagtttggc
gcagacaaagatgtgtttggtccaagattcttgaaaaacttttccgtgacgttccagaac
ctgtatgagtgccctgtagatgacaaggagaagatattacgtgtgctgaatctgtggcag
aagaacgatgtgtttggaatggacatcattcagcctctgctggatatggccacagctcca
gtgcttcctgtctttgagaatggaactacagtgggcgtctccctcgctacaccaatgtca
gtaccacagctggcatcagcttctgccacagcagtaaccctgcccgctctacagaaccca
gtgtctccacccactctacataaccctgtggctccaccccacctacaaaactttatagct
tcacccactgtacagaaccccgtggctccacctgctcttcagaacccaggtgccctggct
gcagttgcccagttgctccagggcacacagggcttagagcagctgcttcagagtctgcag
cagagcggaggggcggggctttcacagtccactgccccgcccaccgaacagaagacatca
ctagctaagagtttgctggatcggtttgattacgatgatgatccagaaccagtggaggaa
aaccctgaacccgcccctactgctcctcatgcgttgaaccttacactagaattacagcaa
gccctgcaggcccaccttctaagccaactagctaaccagtcgcaggagcaggtggcactt
cagagtttgccagcgatggtgccgaaccaaataccaaacacactacaaaacacagtacac
acactggatgagagcagcgtgccgcccagtttccagcagccacatgtgcaaaaccgcttc
cagacaacacctttacctgaggagtcagctgtgaagatggatcactcagcggatgatcga
gacagaagacacagaagatcacgatccaggtctccacaaagaagttcaacgtctcgttca
cgaagatcgccgtccggttcgcgctcccatcgatcgaggtatcatcgcacacgatcccga
tccaaagagcgccgagcgcgatcagaggagaggagggagagagagaaggagagagagcgt
agacagaaaggacttccgtccatcaggaaggaacatctcagcgtgtgcagcactacgtta
tggatcggccagctggacaaaaagacacaaaaacaggatatcatgagtctgatggaggaa
ttcggacaggttgagtctatcaatatgattcctcctagaggttgtgcatacgttgtcatg
gtgcacagacaggacgcacacacagccctgaacaaactcagcagagggactgttaaagtc
aaccagaaatctataaagatcgcgtgggcgttgaataagggcattaaagcggagtttaag
aagttttgggatgtggagcggggtgtcacgtatatcccctggaacaaagtgaaacgtgac
gatattcagagttatcgaggaggtggtatgctggatgctgaaactctcaaaccagagtgg
aacatttctgtggccaatccagcagtgccagtcacaggaggacctgaaggaggacaggga
aatggagcttcactcctaacggtatcacagagtcccacagttcagcctgtggcctctggg
aacatcccgccgggacctcctcctaacatgagactacctcctcctgccatgatcacagga
gctcctcttctagcgttcccacctccaggattcaaccccgcaaagatgcctgcaggtaca
accacagacctctcctcctga
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