Triplophysa rosa: 130565286
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Entry
130565286 CDS
T09216
Name
(RefSeq) protocadherin Fat 4 isoform X1
KO
K16669
protocadherin Fat 4
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tros04515
]
130565286
Cell adhesion molecules [BR:
tros04515
]
Cadherins
Cadherin related
130565286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Cadherin_CELSR2_9th
Laminin_G_1
EGF
Cadherin_4
EGF_TEN
Cadherin_pro
EGF_CA
hEGF
EGF_2
Motif
Other DBs
NCBI-GeneID:
130565286
NCBI-ProteinID:
XP_057207886
LinkDB
All DBs
Position
LG14:complement(17386816..17403674)
Genome browser
AA seq
3015 aa
AA seq
DB search
METLGLINLCTFFLHLAVFLRFAVSDVGCTSSSDRLWTHSYEKKWSNISALPSMSITSLR
NKRFTQLSFSKSVYSFEVREDTPPGTIVGQVKALYGKEYETPIYSVLEDDGDGLFLLDPH
SGEFLLSRALDFEMERYYILTVAAQQGDGQLKRVRVYFNVIDVNDNPPVFSQNVFSDSVL
EDSPVGTCFLTLNVSDADEGLYGEVDLLVVSGDLESRFSLDQQGALCLRGVLDRETVATY
SLIIHASDRALPPDTPHTTSAHVTIHILDVNDNPPLITTPDAVIFPEDAPLHSVVSVIQA
TDADLGSNAEIVFSLENQAVETFSINSSTGVMYLQKLLDREVEDAITVLLKVKDKGVPQM
FSLFNLTVLIEDVNDHNPEFIQSFYNITIHEDVPRGTSLLKVHARDRDDGLNGEVRFHIS
ETGFVMDSVLGVLSVIDEVDREKKAFYSFTVTAVDQGHVQRSASATINITVIDVNDCMPV
FPSELLILHVFENGVDSSQHVHQLYAVDDDLEANGLLTYSVESGNEEGLFSLSPNGTFQI
VENLDRELKSQYMIKVIAVDSGFPSLTGTGTLVIVVDDVNDNIPIFDEDTFDSRVSEDSP
VETVFGRATASDKDDSSNGQLKYSLDGEDIPFSINDTSGELFTIRALNRETVAFYRFFVV
VTDRHSTQMLSSSATVSVTVEDVNDHSPSFLYGPYVANVPSGIAKGSVVCTVMAEDADAG
LNGKLNFSLHGLHAHHFSINFLTGTVFITDSVKRGNDITVDVHVQDGADVPKIDTTTLTV
RFQNNSDFPHIAVQVYKDFLSEDEPTGTLVAIVTAETLRNIPVSFYLSSGNIGDVFELHH
YTGELTVRDPLDFETNVYFHLIVEARDSGMPPYSSYAEINLNISDVNDNPPVFSQKIYRC
EVHENLAAHQVCDMSATDADSGAFGEVKYFLLAGNFEGTFKIDLNHGTLTTTKRLDREKI
SHYSLTVKAVDKDKNSLSATATIVVTVLDVNDHAPRFSQIFITEVSEDAPVGFSIIRVTA
TDDDVGVNAVIEYTILGQNNNFPFSIDKASGVVVVSEPLDREDQDHYIVKVNANDLAWSV
STDVTIYIMDINDNTPFFIQPLYSITVPEMNLPEMFLLQVNATDRDLGPNAQILYFIDPA
NERFFVNAYTGDVSTKQLISLHDSVSLNCSFTVVASDCGSVSLNSSTVLSVTLVRYNYFP
PSFLPIRPLVPILWNLEVGTEVIQLSAVDQDSLEMNDTVEYFNSGGNGSVYFQVQHESGR
VLVNQTLINNLDTILTLQVTAKDKGYPPLSTQTEVSFTVTGKNLFSPYFPDSKFTFFVPE
DLPTGSIIGKIQAKDKDAGINGLISYYFNSGNENGLFSIERSSGLIMLVKALDFEKSETH
NLNVIAKDGGWHPKMGQLNITVYVTDLNDNPPVFASAEYIVSVLENAVVGSLVVWVWATD
ADSGIHGETTYSLIAGDMSFFYLDTKNGTITTSEVFDFEQHQNFGVTVKATNLGYPYLYD
IAHVRIEVTGINEFIPAFQNHIYNFSVSEALPVRTEIGRVVTVDYDLGPDGDVFYVLAGQ
SKKAGFGVVEHTGMIYVSRDLKNRGQNYDVLHVLAKNRGSITGFNIDEALIHLQILDEND
PPEFDSMVYVVAVPEDVSVGTSITKVKAVDRDVVPEWSRFSYSIEHGNINGSFGIDPVNG
VISVHNHLDRELWPFYNLSVVAIDEGSPAVTGTTKVSITINDVNDNPPKLSITEGFIREN
QPPGTKVTTLTATDEDLPPNQGLFTYWLMRPENSFSLTSDGVLFSSRPLDRERNPSFHLH
IVVQDAGKPSLSSTTVFHIKVLDENDNAPSQRNINILVKYYGSSFPGGLIGNVRPNDEDV
LDVFNCTIRNGPLRMFSFPFGMCNLWSLPYQGEATYNISVEASDQLHPSVNNSIYVNYKG
FTNVSLDNCVLFYISISTLEEFLSLKYLKFVKALDSLFNLQASKTHVFGIKSQGDKMLLL
AAVKSYNGLYVTADVASGISNIHKKLLEGQSNVTISQITSDPCTLFPCQNGATCNRNIHI
SQDVAVLESSSLIFVSPYFEIFNCSCQTGFTGEACELDLDECEKKPCENRGTCYNNPGTY
FCQCKDGFSGPHCTTVDNECQTVTCLNGGTCWNKHGGFICDCSPGYEGRFCDHIVDHCAS
SPCVHGYCSSFLTGYSCQCPFGVSGVNCEEHSYGFQELSYIEIPPLDPHYNLISLEFATL
QQNSLLLYNHGDPSTSEFLALETVDGRLWFSYDLGSGVVRLVTGKSVADGSFHNITVKRT
GNIASVEIDICSTSEPQGFCFSQNDGQKATQRTLEVTTNLTFGGIKSIDVILQRQIRTHD
FVGCMRNIQVNKIGSDAFKSLTSHNVLDRCPRSDVPPCQTAKCLNAGVCEDRWFHHQCQC
RDHFTGPNCAMNLAEQHVLFLNGESHIEFAVKESYRRNQLLQAVLDGKDGDSQGFDSIEV
KMRTVRKNGFLVVCWGPTAHLNLKILDGKPRCAFTNITSGQQLEVSVDGDVSDGQWHVLQ
LRRRGTYVTLLMDDRPEVNNTNITVTHSALLVETIFLGTASLTETRDQNLVFSGCVEYIK
FNGHVLPFKSFSEIAEAKSNPFDLQNVCISPDNCVLISCLQHSCPSVPCLSNKDCGSPSK
DDFWCICLRNMSGSSCATCSSDTMASQACSQSQKSTPLWIVAVVLPIALVLLVLVLCIVI
KSQGKLCNGQKASHAYLMPPAKQHGTDNLAFNAVDEIPQNIWNDSCQQPDLIKPKDTTRG
LKSYSKGGPPCPISSFGGSELEYYEIDSTYTVCSADVNTQTNDKPGIDPERLNGNPQIPP
CSTNQVLPSPKLQRDFHNWERQSHIFFKRKLPPDVNGPPQHLSKDEVEKLNVTWERKGDF
LVKPCRAVWSGGGIETSSESESHCSFTGSECDYCERELSLISSQDHKDEHPSADLSRGQS
ILMAPSLIRDHSMVTPACVQSLHSSFASSGVQQLEGLLNLGVNFSTYADVFEDIARLSTN
HPNACDFQSDQEEII
NT seq
9048 nt
NT seq
+upstream
nt +downstream
nt
atggagacgttaggattgataaatctctgcacatttttcctgcacttggcggtttttctc
aggtttgctgtgagtgatgttggctgcaccagctcatcagatagactttggactcacagc
tatgagaagaagtggtctaatatctccgctctgccatctatgagcataacatcccttcgt
aataaaagattcacacaactctccttttccaagtctgtatattcatttgaagtaagagaa
gacacgccccctgggacgattgtaggtcaagtgaaggcattatatggcaaagaatacgaa
acaccaatatactccgttctagaagatgatggcgatggtcttttccttctcgacccacat
tccggggaattcctcttatcccgtgctcttgattttgagatggagcgatactacatcctg
accgtcgctgcacagcagggggacggacagctcaaaagggtccgggtgtatttcaacgtg
attgacgtcaatgacaacccacctgtttttagccagaatgtgttttccgactctgtgcta
gaggactcacctgttggcacatgcttcctgacgctgaatgtttcagatgccgatgagggt
ttatatggagaagtggatttgcttgtggtatcaggagatcttgaaagcagattctcttta
gaccagcagggggcgctgtgtctaagaggggttttagatagagaaacagtggcaacctat
agcctaattattcacgccagtgatcgtgctttaccaccagacactcctcacacaacctca
gcacatgtgaccatccacattctggacgtcaatgacaaccctcccctcatcacgacaccc
gatgctgttatttttccagaagacgccccgcttcattctgttgtttcggtcatacaagcc
acggatgctgatttaggatctaatgctgaaatagttttcagtttagagaatcaagcagtg
gagacgttcagtataaacagctcgactggagttatgtacctgcagaagcttttggatcgg
gaggttgaggatgcgatcacagtcttgttaaaagtcaaagataaaggtgtacctcagatg
tttagtttgtttaacctcacggtgttaatcgaggatgttaatgaccacaatccagagttt
atccaaagcttttacaacatcacgatacatgaggatgttcctcgtggaacaagcctgctt
aaggttcacgcacgtgatcgagacgatggtttgaatggagaggtgcggtttcacatctca
gagactgggtttgtgatggactccgttctgggtgtgctatcagtgatagatgaggtggat
cgtgagaagaaggctttctacagttttacagtcacagcagtagaccaggggcatgttcaa
agatctgcatcggcaaccatcaacatcacagttatagatgttaatgactgcatgcctgtt
tttccctcggaattgctaattttacatgtgtttgagaatggggtagattcttctcagcat
gtccatcagttatatgcagttgatgatgatctggaggcgaacggtctgctgacatactca
gtagaatcaggaaatgaagaaggtcttttttcactttctcccaacgggacttttcaaatc
gtagaaaatcttgaccgggaattgaaaagccagtatatgatcaaagtgattgcagttgat
tcaggtttcccatcactgacaggcacggggaccctggttattgttgttgatgatgtcaat
gacaatattccaatctttgatgaggacacgtttgattctcgtgtatcagaggattctcct
gttgaaactgtgtttgggagagctacagcctcagataaagatgatagttccaatggacaa
ctaaaatattctttagatggagaagacattcctttttctatcaatgacacatctggagag
ttgttcaccattcgtgccctgaacagagagacggtggctttctacaggttctttgtggtc
gtcactgatagacattcaacacagatgctctccagctcagctactgtttcagtaactgtt
gaggatgtaaatgatcactccccatcatttctatatggaccatatgtggccaatgttcct
tctggaattgccaaagggtcggtcgtctgcacggtgatggctgaagatgccgatgccgga
ttgaatggaaaactgaatttttctctacacggcctacacgcccatcacttttctattaac
tttctcacgggaacggtgttcattacagattctgtaaaaagaggaaatgacatcacagtt
gatgttcatgtgcaagatggagcagatgttccaaaaatcgacacaacaaccctcactgtc
agatttcagaataactcagactttcctcatatcgcagttcaagtatacaaggactttctc
tcagaggatgaaccaactgggactctggtggctatcgtgactgcagaaactttgaggaac
atacctgtgtccttttatctgtcctctggaaacattggtgatgtatttgagcttcaccac
tacaccggtgaactgactgtgagggaccctttggattttgagaccaatgtgtattttcat
ctgatagttgaagccagagactctgggatgccaccttattcatcctatgctgaaataaat
ttaaacatcagtgatgtgaatgataacccacctgtcttttcacaaaagatctaccgatgt
gaagttcatgagaacttggcagcacaccaggtgtgtgacatgtcagcaaccgatgctgac
tctggagcgttcggagaggtgaagtactttcttttggctggtaactttgagggcacattt
aaaatagacttaaatcacgggactctcaccacaacaaagcgtttggatagagagaagata
tcacattatagtctcacagtcaaagctgttgataaagacaaaaacagtttatctgccact
gcgacgattgttgtcacagttctcgacgtgaatgatcacgcgcctcgattctcacagatt
tttatcacggaagtttctgaggatgctcccgttggcttttcgatcatccgggtaacggca
acagacgatgatgttggtgtaaatgctgttattgagtatacgatccttggccaaaataac
aactttcccttcagtattgataaagctagtggtgttgtagtggtgagtgagcctttggac
agagaagatcaagatcattatattgtaaaagtgaatgccaatgatttagcttggagtgtt
agtacagacgtcaccatttatattatggacatcaacgacaacacaccgttctttattcaa
cctctatactctataactgttcctgagatgaacctgcctgaaatgttccttctacaagtt
aatgctaccgaccgcgatcttggtccaaatgctcagattttgtacttcattgacccagca
aatgagcgtttttttgtgaatgcttacactggggatgtttcgaccaaacaactcatttct
cttcatgattctgtctcattaaactgtagtttcacggttgtagcttctgattgtggtagt
gtttcattaaacagctctaccgttctctctgtgacgttagtacgatacaattatttccca
ccttcatttttacccatcaggccattggtccccattctgtggaacctggaggtgggaact
gaggtgattcagttatccgcagtagatcaagactctcttgaaatgaatgacactgttgag
tacttcaatagtggtgggaatggatctgtttattttcaggtacagcatgaaagcgggaga
gttctggtgaatcagactttaataaataacctggacaccatcctaactcttcaagtcact
gctaaagataaaggctaccctcctctttccacccagactgaagtcagtttcacagtcaca
ggaaagaatctcttctcgccgtatttccctgacagtaaattcacattttttgttcctgaa
gatttgcccacgggttcaatcatcggaaagattcaagccaaagataaagatgctggcatc
aatggtctcatttcctactattttaacagcgggaatgaaaatggactgttttccattgaa
cgctcttcagggttgatcatgctggtcaaagcccttgactttgagaaatcagaaacccat
aatctaaatgtcattgccaaggatggaggctggcatcctaaaatgggtcaactcaacatc
acagtatatgttacggatttaaatgataaccctcctgtttttgcatctgcagaatacatt
gtctctgttttagagaatgctgtagttggaagtctggttgtgtgggtttgggccactgat
gcagattctggaatacatggagaaaccacatattcgctcattgcaggagacatgagtttc
ttttacttagacacaaaaaatggcactataaccacttctgaggtttttgactttgagcaa
catcagaattttggagttacagtcaaggctaccaacctaggctatccatatttgtatgat
atagcgcacgttcgcatagaggtcaccggcatcaatgaattcatccctgcttttcaaaat
catatctacaacttctctgtgtctgaggcgttgcccgtacggacggaaataggtagagta
gttaccgtagactacgacttggggcctgatggggatgtgttttatgtacttgcaggtcaa
agtaaaaaagccggctttggggttgttgagcatacgggtatgatatacgtctccagagac
ttgaaaaaccgaggtcaaaattatgacgtcctccatgtgttggcaaaaaaccgaggcagt
attactggatttaatattgatgaagctttgatacatctacaaatattagatgaaaacgac
ccacctgagtttgattcaatggtctacgtggtagcagtgccagaagacgtctccgttggg
acctccatcaccaaagtcaaagcggtggaccgtgatgtggtaccagaatggagcaggttc
tcgtacagcatagaacatgggaatataaatggttctttcggtatagatcctgttaatggg
gtcatctcagttcacaatcacttggatagggaattgtggcctttctataacctctcagtt
gttgctattgatgaaggctcgcctgctgtaacaggaaccaccaaagtaagcattaccatc
aatgacgtcaatgataacccacccaaactctccatcacagagggctttattagggaaaac
caacctcctggaactaaggtgactactttaacagcaactgacgaagatcttcctccaaat
caaggtctgttcacctactggctgatgagacctgaaaacagtttttctctcacatccgat
ggggttctattttcatcaaggcctcttgatcgggaacgcaacccttcctttcatttgcac
atcgtcgttcaagatgctggtaaaccgtcgttgtcatccaccactgtgtttcacattaaa
gtcctggatgagaatgacaatgcaccatcgcagaggaacatcaatattttagtgaagtat
tacggaagctccttccccggaggtcttatcggaaacgtacgaccgaacgatgaggatgta
ctggatgtgttcaactgcactattagaaacgggccactccgcatgtttagtttcccattc
ggaatgtgtaatttatggtccttgccatatcaaggggaggcgacatataatatatcagtc
gaggcgagcgatcagctccacccttctgtcaacaacagcatctatgtcaattacaaaggc
ttcactaacgtctctttagacaactgtgtgttgttctacatttctatatctacacttgag
gaattcctgtctttgaagtatttaaaatttgttaaagcactggatagcttgtttaatcta
caagcgtccaaaacgcatgtgtttgggataaagtcacaaggagataaaatgctgcttctg
gctgccgtaaaaagttacaacggactgtacgtaaccgcagatgtggcaagtggaatatca
aacatacataaaaagttactggaaggacaaagcaatgttactatatcccagataaccagc
gacccatgtacactttttccttgccaaaatggcgccacatgcaatagaaacattcacatc
agccaagacgttgctgtcttggaaagttctagtctcatattcgtatctccatattttgag
atcttcaactgttcctgccaaacgggtttcacgggagaggcatgtgagctggacttggat
gaatgtgagaagaaaccttgtgaaaatagaggaacctgttataacaatccagggacgtat
ttttgccagtgcaaagatggattctcagggccgcactgtactactgtcgacaatgagtgt
caaactgtgacgtgtctaaatggtggaacgtgttggaacaaacatggagggttcatctgt
gactgcagtccagggtatgaaggacggttttgtgatcatattgtggaccactgtgcttcc
tctccttgtgttcatggttactgctccagttttttaactgggtattcttgtcagtgtcca
tttggtgtgagcggagtcaattgtgaagaacacagttatggctttcaagagctttcttat
atcgaaattcctccattagatccccattataacttaatctcgttggaatttgcaaccctt
cagcaaaactctttacttttgtacaaccacggtgacccatcaacctcagagttcttggca
cttgaaactgtagatgggagactgtggttctcttatgatcttggatctggggtggtaaga
ttggtcacagggaaatcagtggctgatggaagttttcacaacatcactgttaaaagaact
ggaaacatagcttctgtagaaatagacatctgctctaccagtgaaccgcaaggcttttgc
ttctcacaaaatgatgggcaaaaagcaactcaaaggaccttggaagtgaccactaatctg
acttttggtggaataaagtccattgatgtcattttgcagaggcaaatcaggactcatgac
ttcgttggatgtatgagaaacatacaagtgaacaaaattggttcagatgccttcaagtct
ctgacatcccacaatgtacttgatcgatgtccacgatcagatgttcctccatgtcagact
gcaaagtgtttgaatgcaggagtgtgtgaagaccgatggtttcatcatcagtgccagtgt
agagatcatttcacaggacctaactgtgccatgaatttggctgagcagcatgtattattt
ctcaacggggaatcacacattgaatttgctgtcaaagaaagctacaggagaaaccagctc
ctgcaagcagttctagatgggaaggatggagactctcaggggtttgacagcattgaggtc
aagatgaggaccgtgagaaaaaatggtttcttggttgtgtgctggggtccaacagcacat
ctaaatcttaaaattttagatggaaagcctcggtgtgcgttcacaaacatcacatccggt
cagcagctggaggtgtctgtagatggggatgtgtcagatggacagtggcatgttcttcag
ctgcgcagaagggggacgtatgtaactctgttgatggatgatcgacctgaggtgaacaac
accaacatcactgtaactcactctgcactcttagtagagaccatatttctaggaacagct
tcgttaacagaaaccagagatcagaacttagttttcagcggctgtgtggagtacattaaa
ttcaatggccatgtcctgccttttaagagctttagtgagatagccgaggccaaatccaac
ccatttgacctccaaaacgtatgcatttctccagacaactgtgttctcatttcatgcctt
caacattcctgtccctcagtgccatgcttaagtaataaagactgtggatctccttctaaa
gatgacttctggtgcatttgtttacgcaacatgtctggttcttcatgtgcaacctgctca
tctgatacaatggcgagccaagcctgttctcaatcccaaaagagcacccccttatggatt
gttgcagttgttcttcccattgctcttgttctgctggtccttgttctgtgcattgtaatc
aaaagtcaaggcaaactctgcaatggccaaaaggcaagtcacgcctacctcatgccaccg
gccaaacagcatggcacagataacctggcatttaatgcagttgatgaaattcctcagaac
atctggaatgatagctgccagcagccggatttgataaagccgaaggacacgacacgtgga
ttgaaaagttacagcaaaggtgggccgccttgtcccatttcaagctttggaggaagtgaa
ctggagtattatgagattgatagcacttatacagtctgtagcgcagatgttaatacacaa
acaaatgacaaaccaggtatcgatcctgagagactgaatggaaatccacaaatccctcca
tgcagcacaaatcaggtgcttccttcacctaaacttcagagagattttcacaactgggaa
cgtcaatctcatatcttctttaagcgaaaactgcctcctgatgtgaacgggcctccacaa
catctctcaaaagatgaggttgagaaactgaatgtgacgtgggaacgtaagggagatttt
ctagtaaagccttgcagggctgtctggtcaggaggcggtatagagacttcatctgagagc
gaaagtcactgctcatttacaggctctgaatgtgattattgtgagagagaactttccctc
atcagctcacaggaccacaaagatgaacatccatctgcagatttgtccagaggacagtct
atcctgatggccccttctctcatcagagatcattccatggtcacacctgcatgtgtccag
agtctccacagctcctttgcctccagtggtgttcagcagttagagggtcttttaaatcta
ggagtcaatttcagcacctatgcagatgtgtttgaggacatagcccgcttatcaaccaat
catccgaatgcatgtgattttcagagtgatcaggaggaaatcatttaa
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integrated database retrieval system
