Triplophysa rosa: 130565346
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Entry
130565346 CDS
T09216
Symbol
hif1al
Name
(RefSeq) hypoxia inducible factor 1 subunit alpha, like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
tros
Triplophysa rosa
Pathway
tros04137
Mitophagy - animal
tros04140
Autophagy - animal
tros04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
130565346 (hif1al)
04137 Mitophagy - animal
130565346 (hif1al)
04148 Efferocytosis
130565346 (hif1al)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tros03000
]
130565346 (hif1al)
Transcription factors [BR:
tros03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
130565346 (hif1al)
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
130565346
NCBI-ProteinID:
XP_057207980
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Position
LG14:complement(14541653..14557922)
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AA seq
625 aa
AA seq
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MVNSANKRPSLEQRKVRSRDAARCRRSQETEVFYELAHSLPLPRRIASHLDKAAIMRVTL
SYLRMNHLIQSGSTKTQSQDETEDPTDGFYQQALAGFILVLTEEGDMVFLSDGVSKYIGI
TQLELLGQSVYEFVHPCDQEELRDILTSRPGLTKKNSDKLTEFNFFLRMKSTLTHTGRTV
NIKSANWKVLHCTGHIQTLSSEDESSPPAGSFLTLICEPIPHPSSVEFPLDSSTFLTRHN
MDLTFTQCDGCVTELVGYQTDELIGRSAYEFFHALDFDHVTRSLRTLFSKGQVCTSHYRF
LAKNGGFVWTETQATVLYNSRTSQPEAVVCLNFILSGVEQADVVFSLEQTFDTSKPKVEV
LSVLKEVDSDTEESSTADLFLKMKENPEELLQLAPHSGDAIISQTEGVKLSFGCPPSASS
IPECPQDFCTPELRQLLSPIFDKPTKSPPAASLAEELPVEMDGVERFFALKPEESLTVKG
VTEDMDELDLDMLAPYISMDDDFQLTFLPQCPEMVTSSSEMQSNTSRKRGLEDDDIPVLA
AKWEEREMGSSNEDELLLSHSLLKNFVSEEFELPPQKRTHLLTDRDPLLGGTQSLCDTPA
LMRNSFLNRPPDLMKPIDNTVLSLT
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
atggtgaactctgcgaataaaaggccgagtttggagcagcggaaggtgcgttcgcgggat
gcggcgcggtgtaggaggagccaggaaacggaggtgttttacgaactggctcactctctg
cccctcccacgacgcatcgcttcccacctggacaaagctgccatcatgagggtgacgctc
agctatctgcgcatgaaccatcttatccaatccgggtctaccaaaacacagtcccaagac
gagaccgaggatcccactgatgggttttatcagcaggcactggctggtttcattctggtc
ttgacagaagaaggagatatggtcttcctctcagacggtgtcagcaaatacattggcata
acacaactggagctgcttgggcagagtgtgtatgagtttgttcatccatgtgatcaagaa
gaattgagagacatcctcaccagtagaccaggtcttacaaaaaaaaactctgataagttg
accgaattcaacttttttcttcgaatgaagagcactctcactcacacaggaagaacagtt
aatatcaagtctgccaactggaaggttcttcactgcacaggacacatacagactctcagc
agtgaagatgaaagctcaccccctgctggcagcttcctgacattgatctgcgagcccatt
cctcacccctccagtgttgaatttcccctggatagcagcaccttcctcacacgccataat
atggatctgactttcacacagtgtgatggatgtgtcaccgagcttgttggataccaaacc
gatgagctgattggccgatcagcctatgagtttttccacgcccttgattttgatcacgtg
accaggagtttacgcaccttgttctccaaaggccaggtatgcacaagtcactaccgcttc
ctggctaagaacggaggctttgtctggaccgagacccaagccaccgtcctctacaacagc
aggacctctcaacctgaggccgtggtctgcctcaacttcatcctcagtggggtggagcag
gcagacgttgtgttctcattagaacagacctttgatacgtcgaaacccaaagttgaggtg
ctgagcgtgctcaaggaggtcgactcggacacggaggagagcagcactgccgatctgttc
ctcaagatgaaggagaaccctgaggagttactgcagctggcacctcactctggagacgct
atcatttctcaaacagagggtgtgaagttgtcatttggctgtccaccgagtgccagcagc
atcccagaatgccctcaggacttctgtacacctgagctccgccagctcctctcaccaata
ttcgacaaacctaccaaatccccaccagctgcgagcctagctgaagagctgccagtggag
atggatggggtggagagattctttgctcttaaacctgaggagagcttaactgtgaaaggc
gtgacggaggacatggatgagcttgatctagacatgcttgctccatatatctcaatggat
gatgacttccagttgaccttcctgccccagtgtcccgagatggttacatcatcttcagaa
atgcaaagcaacacttcaaggaaacgaggtttagaagatgatgacattcctgttctggct
gccaaatgggaggagagagaaatgggcagctccaatgaggatgagcttctgctaagccac
agcttactgaaaaactttgtgtcggaggagtttgagttaccacctcaaaagcgaactcac
cttttgaccgacagagatcctttactgggaggaactcagtcgttgtgtgatacaccagct
ctgatgaggaacagctttctgaaccggccaccggatttaatgaaaccaattgataacacg
gtgttgtcgctcacttga
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