Triplophysa rosa: 130565548
Help
Entry
130565548 CDS
T09216
Symbol
fdft1
Name
(RefSeq) squalene synthase isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
tros
Triplophysa rosa
Pathway
tros00100
Steroid biosynthesis
tros01100
Metabolic pathways
Module
tros_M00101
Cholesterol biosynthesis, FPP => cholesterol
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
130565548 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tros01006
]
130565548 (fdft1)
Enzymes [BR:
tros01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
130565548 (fdft1)
Prenyltransferases [BR:
tros01006
]
Terpene biosynthesis
Squalene/phytoene synthase
130565548 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
GST_C_8
Motif
Other DBs
NCBI-GeneID:
130565548
NCBI-ProteinID:
XP_057208340
LinkDB
All DBs
Position
LG15:complement(379852..388516)
Genome browser
AA seq
458 aa
AA seq
DB search
MRIGARIHVHMAGVCGKSAASLSVLKRSFSLRASPRSVLAGGRRSAQEGRLVSLPPHPFR
AHRHPAYVCFSCQDSMSDTLRTCYAYLNQTSRSFAAVIQALDGELRHAVCIFYLVLRALD
TVEDDMTIPLEQKVPLLHHFHTFLYQPDWCFTESKEKDRRVLEDFPTISVEFRNLGPEYR
DVISDICHRMGVGMADFLETKVGSMKEWDWYCHYVAGLVGIGLSRLFSASQLEDPEVGRD
TELANSMGLFLQKTNIIRDYLEDQREGRAFWPQEAWSQFTSRLEDFAHPQNLSSALSCLN
LLVTDALRHVPDVIAYLSRLRNQSVFNFCAIPQVMAIATLSACYNNPQVFQGVVKIRKGQ
AVTLMMQATNMSAVQSIITQHSQEILQKVSMTDPSREKTLCILTVIREKSLSPAALSSRA
HHLSPVYVSAAMLLAALSWQYLSATSGQPPGGADMQGH
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgcgcattggagcgagaattcatgtgcacatggccggagtttgtggcaaaagcgccgcg
tcgctgtcggtgctcaagcgctcgttctcgctgcgcgcttccccgcgctcggtgctcgcc
ggcgggcggcggagcgcgcaggaagggaggctggtgagtcttcctcctcacccgttcagg
gctcaccgacaccccgcgtatgtgtgtttctcctgtcaggactccatgagtgacacgctg
cggacctgctacgcgtatctgaaccagacgagccggagcttcgcggcggtgatccaggcg
ctggacggagagttacgacatgccgtgtgtatattttatctggttctgcgagccctggac
acagtagaagacgacatgaccatcccgctggagcagaaggttccgttactgcaccacttc
cacacgtttctgtatcagcccgactggtgcttcaccgagagtaaagagaaggacagacgc
gtgctggaggatttccccacgatttctgtggagttcaggaatctgggaccggagtatcgc
gacgtgatctcagatatttgtcatcggatgggagtgggcatggcagactttctggagacg
aaagtgggatccatgaaggagtgggactggtactgtcattatgtggcgggtctggtcggg
atcgggttgtctcgactcttctcggcgtctcagctggaggatcctgaggtgggacgggac
acagaactggctaactccatgggtctgttccttcagaagaccaacatcatcagagattat
ctggaggaccagcgagagggacgagctttctggcctcaggaggcctggagtcagttcaca
tcacgtctggaagatttcgctcatcctcagaacctgagctccgccctttcctgtctgaac
ctgctggtgacagacgcgctccgtcacgtccctgatgtcatcgcgtatctgtcccgcctt
cgcaatcagagcgtctttaacttctgtgccattcctcaggtgatggcgatagcaactctt
tcagcgtgttacaacaatcctcaggtgtttcagggtgtggtgaagatccgtaagggtcag
gctgtgactctcatgatgcaggccacaaacatgagtgctgttcagagtatcatcacacag
cacagtcaagagatcctacagaaagtgtccatgacagatccctctcgagagaagacgctg
tgtatcctgactgtgatccgagagaagagtttgtctccggccgctctgtcctcgagagca
catcacctgtcgcccgtctatgtgtcagcggccatgctgctggcggctctcagctggcag
tatctcagtgccacctcgggtcagccaccagggggcgcagacatgcagggacactga
DBGET
integrated database retrieval system
