Triplophysa rosa: 130565801
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Entry
130565801 CDS
T09216
Symbol
cpsf2
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
tros
Triplophysa rosa
Pathway
tros03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130565801 (cpsf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130565801 (cpsf2)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
130565801 (cpsf2)
U7-dependent histone pre-mRNA processing factors
130565801 (cpsf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
130565801
NCBI-ProteinID:
XP_057208862
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Position
LG15:complement(1361107..1366645)
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AA seq
788 aa
AA seq
DB search
MTSIIKLTALSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDSLKRYVHQVDAVLL
SHPDHLHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYDLYQSRHNTEDFSLFTLDDVD
TAFDKIQQLKYSQIINLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCSLESISRPSLLITDSFNAAYVQPRRKQRDEQLLTNVLETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLSRVPSPKVVLCSQPDLESGFSRELFIQWCQDARNSVILTYRTT
PGTLGRYLIDNPGEKRIELEIRKRCRLEGRELEEYAEKEKMKKEAAKKLEQAKEEDLDSS
DESDMDDDLEQPAVVKTKHHDLMMKGEGGRKGSFFKQAKKSYPMFPTHEERIKWDEYGEI
IRPEEFLVPELQATEDEKSKLEFGLTNGDEPMEQDLSDVPTKCNSITQTLDIRARVTYID
YEGRSDGDSIKKIINQMKPRQLIIVHGPPEDSQDLAESCKAFSGKDIKVYTPKLQETVDA
TSETHIYQVRLKDALVSSLQFCRAKDTELAWIDGVLDMRVEKVDTGVVAEVGDVKDDGED
GDPAMEVTTSDLTTEPSSVANQRAMKTLFGEDEREISEESDVIPTLEPLPVQEVSGHQSV
FINEPRLSDFKQVLLREGIQAEFVGGVLVCNNLVAVRRTEAGRICLEGCHCDDYYRIRQL
LYQQYAVI
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgacgtccatcatcaaactgacggctctgtccggcgtacaggaggaatctgctctgtgt
tacctgttacaggtggatgagtttcgcttcctgctggactgtggctgggatgagagtttc
tccatggacatcatagattccctgaagcggtatgtgcatcaggtggacgcggtgctgctc
tctcaccctgatcatctgcacctgggagctttgccgtacgctgtgggtaaactgggactc
aactgcaccatctacgccacaatccctgtctacaagatgggccagatgttcatgtacgat
ctctatcagtcccgtcacaacactgaagattttagcctcttcacgctagacgatgtagat
acagcatttgacaaaatccagcagttgaaatactcgcagatcatcaacctgaaaggcaaa
ggtcacggtctgtccatcaccccgctgcctgccggtcacatgatcggtggcactatctgg
aaaatcgtgaaagatggagaggaggagattgtgtatgctgtggatttcaaccacaagagg
gagattcatctgaacggttgctcgctggagtcgatcagcaggccgtctctcctcatcacc
gactccttcaacgccgcatacgtgcagcctcgcaggaaacagcgcgacgagcaactgctc
actaatgtcttggagacgctccgcggtgacgggaacgtgttgatcgctgtggacaccgcg
gggagagtgctggagctggcacagctcctggatcagatctggaggaccaaagacgcaggg
ttaggcgtctactcgctcgccctgctcaataacgtcagctacaatgtggtggagttctca
aagtctcaggtggagtggatgagcgataaactcatgcggtgcttcgaggacaaacgcaac
aaccccttccagttccgtcacctctccctctgtcacagtctggcagatctgtcccgcgtg
ccgagcccgaaggtggttctgtgcagccagccagacctggagtccggtttctcacgagag
ctcttcattcagtggtgccaggacgcgagaaactcggtgatcctcacgtacaggaccacg
ccgggaactctgggacgctacctcatcgataacccgggagagaagaggattgagctggag
ataagaaaacgctgcagactggagggtcgtgaactggaggagtacgcggagaaagaaaag
atgaagaaagaagctgccaagaaactggagcaggcgaaagaggaggatctggactcgagc
gatgaaagcgacatggacgatgacctggaacagcctgccgtagtgaagaccaaacatcac
gatctgatgatgaaaggagagggaggcaggaagggcagcttcttcaaacaggccaaaaaa
tcctaccccatgtttcccacacacgaggagaggattaaatgggacgagtatggagaaatc
atcaggccggaggagtttctggttcctgaacttcaagccactgaagacgagaagagcaag
ctggagtttggattgaccaacggagacgagccgatggagcaggacctgtccgacgtgccc
accaaatgcaacagcatcacacaaacgttagacatcagagctcgagtcacgtacatcgac
tacgagggccgatctgacggcgactccattaagaagattataaaccagatgaaaccccga
cagctgatcatcgttcacggtccccccgaggacagtcaggatctggctgagtcctgtaag
gccttcagtggaaaagacatcaaagtttacacccccaaacttcaagagaccgtggacgcc
accagcgaaacacacatttaccaggtgaggctgaaggacgcgctggtcagctctctgcag
ttctgtagagccaaagacacagagctggcctggatcgacggcgtcctggacatgcgtgtg
gagaaagtggacacgggggttgtcgcggaggtcggggatgtgaaggatgacggggaggac
ggcgatccggccatggaagtgacgacgtcagacctgacgactgaacccagcagcgtggct
aaccagcgcgccatgaagaccctgtttggagaggacgagcgagagatctcggaggagagt
gatgtcatacccacgctggaaccgctgcctgttcaggaagtgtcaggtcatcagtctgtg
ttcatcaacgaaccgcggctgtcggactttaaacaggttcttctgcgtgaagggatccag
gcggagtttgtgggaggagttctggtgtgtaataatctggtggccgtgaggagaacggag
gctggtcgaatctgtctagagggctgtcactgtgatgattattacaggatccgtcagctg
ttgtatcagcagtacgccgtcatttag
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