Triplophysa rosa: 130566524
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Entry
130566524 CDS
T09216
Name
(RefSeq) collagen alpha-1(XIV) chain isoform X1
KO
K08133
collagen type XIV alpha
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tros00535
]
130566524
Proteoglycans [BR:
tros00535
]
Extracellular matrix (ECM) proteoglycans
Others
130566524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
VWA_2
Collagen
Pur_ac_phosph_N
DUF4959
FN3_Tor_3rd
Fn3_nematode
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
130566524
NCBI-ProteinID:
XP_057209976
LinkDB
All DBs
Position
LG16:69588..112258
Genome browser
AA seq
1779 aa
AA seq
DB search
MRGRALLIVILTSVLCTHAQVSSPRRLRLKELSPSMLSVTWKEPKGQFDVYKLVYSTDPG
GFERELSVSKKESKAVIQGFDPSKEITVRITAVRGTEQSKPLMATYTGSGSEVSEVSVRQ
DPSDSEDDNQITEVDIFMCKTPAVADIVILVDGSWSIGRINFRLVRMFLESLVKAFSVGS
EHTRIGLAQYSGDPRIEWHLNTHRTKESVIDAVKNLPYKGGNTLTGLALMYILENSFKPE
SGSRTDVPKIGILITDGKSQDDVQFPAQSLREAGIELFAIGVKNADENELRAIASPPEDT
HVYNVADFSVMSSIVEGLTRAVCERVSELSKEISGETVPHSSRSLDVPSNLVTSEVTARS
FRVSWTHAAGQVEKYRVVYYATKGSKPEEVVVNGDENSVVLSYLNSLTEYEIAVFAVYSN
RASEALRGSETTLVLPTVNNLELYDLTHSTMRVRWREAEGASGYMILYAPLTRGDAADEK
EVKVDDSVTQVELEGLTPDTEYTVTVYAMYGEEASDPMTGQQTTLPLTPARNLRISDVSH
SSAKLSWDSASRKVKGYRIVYVKTDAVETNQVEIGPVTTLLLRNLTSLTEYTVAIFPVYD
EGQADPLTDSFTTNVVPQPVNLRSSDVSSDRFKVMWQHAASDVSFYRLIWRPAAGGETKE
FLMNGNSNWYVITGLRPLTEYEVSLSGVYRDESESDPVEISESTVARTTTAATTTTSTAT
AVVRQVVRNIRLSDATTFSMRVSWDSAGPNVRQYRVSYISTRGDRAEQLSMVPAGQMSVV
LQPLLSDIEYRVSVSAVYSDGEGPVLTRVARTLPLSAPSNLRVSEEWYNRFRITWDTPPS
PTMGYRIVYQPTSVLGRALETFVGDDVNTMLILNLLSGTEYSVKVIATYTTGSSDALTGR
AKTLYLGVNNLNTYQVRVTSMCAQWQPHRHANQYRVIIESQLNGEKQEVRLGGSASRYCF
NDLTPNTLYKISIHAQLQDAEGPAVTTTQRTFPVPTVPPTRAATSPPATLPATKEVCRAA
KADLVFLVDGSWSVGDENFQKIIRFLYSTTGALDRIGPDGTQVALAQFSDDPRTEFKLNS
YDKKETLLDAIQRITYKGGNTKTGRAMKHVKDAVFTAVGGARRGVPKVLVVLTDGRSQDD
VLLVSQELQVEGYIVFAIGFSDADYGELVSIASKPSERHVFFVDDLDAFRKIEEKLVTFV
CEAASATCPSVPMSGSTLPGFRMMEMFGLVVHTYSSVNGVSMQPGTFNSYSSYRLSSDNL
ITQPTRLIHPEGLPSDYTITMLFRLLPETPKEPFALWAILNSNNEPLVGVILDNEGKTLT
FFNTDYNGDFQAVTFEGAEIQKLFYGSFHKLHIAVSKTSALVMVDCKSVGEKSINAASNI
STDGLEVLGRTVRSRGSKVNSAPFQLQSFDIVCSTSWARRDKCCELPNLRKESDCPALPR
ACTCTQDSKGPPGPTGPPGGPGIRGARGDRGEPGPGGPVGLVGDAGVPGAQGPPGPPGPS
GRSIRGPQGAAGETGQKGEAGSPGPQGVPGTPGPAGRDGPPGHRGLTGKDGPQGREGPRG
TIGGPGAPGAPGENGPPGPTGHQGPPGILGAKGEKGERVSALFSLIWSQQGCDFLTSLGS
PAVMCSQQRPFRPSPDKCVSNSFRVTWHVTTPFSITFPVSRSLSAPCPALQESPDDQEPQ
DLRESRARLGDLDFLAVMERTASPEPEVLRVRKERKGVQVWVCRDSEELLGLQDRPVKGE
QEVLELLVVPVTPVLPADLEFQDPWVRPDRPDIVTRTLA
NT seq
5340 nt
NT seq
+upstream
nt +downstream
nt
atgcggggtcgagcgctgttgattgtgatcttgacatcggtcctttgcacacatgctcaa
gtgtcgagccccaggaggctgcgattgaaagagttgagtcccagcatgctcagcgtaacc
tggaaagaaccaaagggacagtttgacgtctacaagctggtgtacagcactgacccggga
ggatttgagcgtgagctgtcagtgagtaaaaaagaatctaaagccgtcatccaagggttt
gaccccagtaaagagatcacagtgaggatcacagctgtcagaggaacagagcagagtaaa
ccactgatggccacatacaccggttcagggtcagaggtgagtgaggtcagtgtgcggcag
gaccccagtgattctgaagatgacaatcagatcactgaagtggatatcttcatgtgtaag
actccagccgttgctgatattgtcattctggtggatggatcgtggagtatcgggcggatt
aatttccgtttggtgcggatgtttctggaaagtcttgtgaaggccttctctgttggatca
gaacacactcgcatcggcttggctcagtacagtggagatcccaggattgagtggcattta
aacactcacaggactaaagaatctgtgatcgacgctgtcaagaatctaccttacaaagga
ggaaacacactcacaggtcttgctttgatgtatattttggagaacagctttaagcctgaa
tctggatccagaactgatgttcctaagattgggattctgatcactgatggcaagtcacag
gatgatgttcagtttccagctcagagtctcagagaagcaggaattgagctgtttgctatc
ggtgtgaagaacgctgatgagaacgaactgagagccatcgcttctccaccagaagacact
cacgtttataatgtggctgacttcagtgtcatgagctccatcgtggagggactcaccaga
gccgtctgtgagcgggtcagtgagctcagcaaagagatcagcggtgagacggtaccgcat
tcctcgaggtctcttgatgtacccagtaatcttgtgacgtctgaggtcacagccaggagt
ttccgtgtgtcgtggactcatgctgcagggcaggtggagaagtacagagtggtttactac
gctactaaaggatctaaaccggaggaggtggtggtaaacggagacgagaactctgtggtg
ttgagctatctgaactctctgacagagtatgagatcgctgtgtttgccgtctacagcaac
cgggccagtgaagctctgaggggcagtgagaccaccttggtgttgccgacggtgaataac
ctggagctgtatgacctcactcacagcacgatgcgtgtgcgctggcgagaggctgaaggg
gcttctgggtacatgatcctgtacgcccctctgacacgaggagacgccgccgatgagaag
gaggtgaaggtggatgactctgtgactcaggttgaactggaaggtttgactcctgatact
gaatacacagtgactgtatatgccatgtatggagaagaggccagtgaccccatgacagga
cagcagaccacacttcctctgactccggctcgtaacctgcgcatctctgatgtcagtcac
agctcagctaaactttcctgggactcagcgtctcgtaaggtcaaaggttaccgtattgtt
tatgtgaagactgatgctgttgagaccaatcaggttgagataggtccggttaccacactg
ctcctccgcaacctgacctctctgacggagtacaccgtcgccatcttccctgtgtatgac
gagggacaagctgaccctctgacagacagctttaccaccaatgtggttcctcagccggtg
aatctgaggagcagtgacgtgtcctctgatcgttttaaagtgatgtggcagcacgccgca
tctgatgtctctttctacagactcatctggagacctgcagctggaggagaaacaaaagag
tttctcatgaatgggaactcaaactggtacgtgatcacgggtctgaggcctttgactgaa
tatgaagtttctctgtctggggtgtaccgagatgaatctgagagtgatccagtggagatc
agtgaatctacagtggccagaacaacaacagctgctacaaccaccacaagcacagcaaca
gccgttgtgcgacaggtggtcaggaatatcaggctgagtgatgcgacgaccttcagcatg
cgcgtgtcatgggattctgcagggccaaacgtgcgtcagtacagagtgtcttacatcagc
acaagaggtgaccgcgctgaacagctgtcgatggttcctgcgggtcagatgtcagtcgtg
cttcagcctcttctgtcagacatagagtatcgtgtcagcgtgtcagcggtgtacagtgat
ggcgagggtcctgtactcacacgcgtcgcacgcacactgcctctgtctgcacccagcaac
ctccgggtgtcagaggaatggtacaatcgcttccggatcacctgggacacacctccttct
cccaccatggggtacaggattgtgtaccagcccacctcagtgctgggtcgtgcgctggag
acgtttgtcggtgatgatgtgaacacgatgttgatcttgaatctgttgagtgggacggag
tacagcgttaaagtcatcgccacatataccacaggatccagcgatgcgctgaccgggcgc
gccaaaacactttatctgggagtgaataatctcaacacataccaggtgcgggtgacaagc
atgtgtgcccagtggcagccccatcgtcatgccaaccagtaccgtgtcatcattgagtca
cagctgaatggtgagaaacaggaagtgaggttgggtggctccgcctccaggtactgcttt
aatgacctcacaccgaacacattgtacaagatcagcattcacgctcagctgcaggacgcg
gaagggcctgcggtcaccaccacacagagaacatttcctgtgcccacagtcccccccacc
agagccgccacctcccccccggccactttacctgctactaaagaagtgtgtcgagcagct
aaagctgacctggtgtttctggtggacggttcgtggagtgttggagatgaaaacttccag
aagatcatccgttttctgtacagcacaacaggagctctggacaggatcggacctgatgga
acacaggtggctctcgctcagttcagcgacgatcctcgtacagagtttaaactgaactcc
tatgacaaaaaagaaactcttctggacgctattcagagaatcacttataaaggaggaaac
acaaagacaggcagagccatgaagcacgtcaaagatgctgtgttcactgcggtgggcggg
gctagaaggggcgtgcccaaagtcctggtggtgctgacggatgggcgttcccaagacgat
gtccttctcgtgtcccaggagctccaggtggaaggttatatcgtgtttgccatcggtttt
tctgatgccgattacggcgagctggtgagtattgccagcaaacccagtgagagacacgtg
ttcttcgtggacgatctcgacgccttcagaaagatcgaagagaagctcgtcacctttgtg
tgtgaggccgcatcagcaacctgtccatctgtacctatgagtggcagcacattaccaggc
ttcaggatgatggagatgtttggtttggtggttcacacgtacagcagtgtgaacggtgtc
tccatgcagcccggcacctttaacagttacagcagctacagactgagtagtgataatctc
atcacacaacccaccaggttaatccatccggagggtctgccatcagactacaccatcaca
atgcttttccggctgcttccagaaacccccaaggagccatttgcattgtgggcaatcctg
aacagcaacaacgagccattagtgggtgtgattctggacaatgaagggaagactttgacc
ttcttcaacacagactataacggtgatttccaggcggtgacgtttgagggggcagaaatt
cagaaactcttttacggcagttttcataagctccacatcgcagtgagtaagacctcggct
ctggtgatggttgactgtaagtcagtgggtgagaaatctattaatgctgccagtaacatc
agcactgatggtttggaggtgctgggcaggacggttcgatccagaggatccaaagtcaac
tctgcaccgtttcagctgcaatcgtttgatattgtttgtagcacatcatgggccagacgg
gacaaatgctgtgagctgcccaacctgagaaaggaatcagattgtcccgcactgccccgt
gcctgcacctgcacacaggacagcaagggaccccctggccccacgggaccccctggaggt
cctggtatcagaggagctcgaggagatcgaggagaacctggaccagggggtcctgttggt
ctagtaggtgatgctggagttccaggtgctcagggtccccccggacccccagggcccagc
ggacgctccatcagaggccctcagggggccgccggtgagacggggcagaaaggtgaggca
ggctctccagggcctcagggtgttccaggcactccagggccagcaggacgtgacgggccc
ccaggacaccggggcctgacgggtaaagatgggcctcagggaagagagggaccccgggga
accataggaggtccgggggctccaggagccccaggagaaaacggccccccaggacctaca
ggacaccagggtcctccgggtatcctaggagctaaaggagagaagggtgagagggtgagt
gctctcttctcactgatctggagtcagcagggatgtgactttttgacctcgctgggatca
cccgcggtgatgtgcagtcaacagcgtccgttcaggccatcgccagacaagtgtgtgagc
aactcattcagagtcacatggcacgttacaactccattctcaatcacgttcccagtcagc
cggtctctatccgcaccgtgcccggccctccaggagagtccggacgaccaggagccccag
gacctcagggagagcagggcccgtctgggcgacctggatttcctggcagtaatggagaga
acggccagcccggagccagaggtcctccgggtgagaaaggagagaaagggagtccaggtg
tgggtgtgcagggactccgaggagctgctgggcctccaggaccgcccggtgaagggagaa
caggaagtactggagcttctggtcgtcccggtaaccccggtactcccggcagacctggaa
ttccaggacccgtgggtccgcccggaccgcccggatattgtgaccagaactcttgcttag
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