Triplophysa rosa: 130566706
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Entry
130566706 CDS
T09216
Symbol
cnot3b
Name
(RefSeq) CCR4-NOT transcription complex subunit 3b isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130566706 (cnot3b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130566706 (cnot3b)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130566706 (cnot3b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130566706 (cnot3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
Motif
Other DBs
NCBI-GeneID:
130566706
NCBI-ProteinID:
XP_057210370
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Position
LG16:complement(5053167..5063893)
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AA seq
884 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWKKLHNAANANQKEKYESDLKKEIKKLQRLRD
QIKTWVASSEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQKE
KEEVGQWLTNTIDTLNMQVDQFESEVESLSVQTKKKKGDKEKQDRIEELKRLIERHRFHI
GMLETILRMLDNDSIQVDSIRKIKDDVEYYLDSSQDPDFEENEFIYDDIDFEEIPQPIVA
TSPPGNTEDDIFQHSSSTPTSTTSSSPIPPSPATCTTNSEDEKKRGRSTDSEISQSPVKT
NPAFLFQSPIKNGNPSSSLSSSSSLSSSSGASSNSLISMATITSGASSTSGGSSLLGHVM
ASHQNSGSYSSATQQQSQQSTHQHQPKNSSQSNANSASNNSILILTPTSTSPPNTSTTGP
VTPVSQSQTGFGSSLGLGKGTPTSGANQIPGLVLSGMPASLSSMAGFLSPAPYAQAAAAG
ALSVGFSGANVSSTNSSGVVTSMTANGSLSSTSLLGSGPGVLGLGLTQSSVEPLVVLSPV
GGGLTSGSSVGVIGSNIGTSGSGSAPAMGSAGLPRPPSGPKQNGGTSYSAVVADSTSDSI
LNSATQLQNSQSTSLNSSANQPKDTGSSLLGSMMLPPSSPSPSYSESKPAGGSLLNGPHS
YTQAVDTIKEPPSSLKSMAERVAHGSGLEEELSALHITSDIFPNSTTSSGTPAAPQSSVS
EVNIPPSLGVCPLGPAPLSKEQLYQQAMQESAWTHMPRPSDSERIRQYLMRNPCPILPFH
HQMPPTHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRH
EEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2655 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagacagatgtttgaaaaaagttgcggaa
ggagtagagcagtttgaggacatttggaaaaagctccacaatgcagccaacgccaaccaa
aaagaaaaatatgagtctgacctcaagaaagagataaaaaaattacagaggcttcgagac
cagattaagacgtgggttgcctccagtgagattaaagataaaagacagctagtagaaaac
cgaaaactcatagaaacgcaaatggagcgatttaagattgtggaacgggagaccaaaacg
aaagcgtactctaaagagggactcggtctagctcagaaagtcgatcccgcacaaaaagag
aaagaagaggtcgggcagtggctaacgaacacgatagacactttgaacatgcaagtggat
cagtttgagagcgaggtagaatcactctctgtccagacgaagaagaaaaaaggagataaa
gagaagcaggatcggatagaagaacttaagcgcctgatcgagcggcaccgctttcacatt
ggcatgctcgagaccatcctcagaatgctggacaacgattcgatacaggtggattccatc
cgcaagattaaagatgacgtcgaatactaccttgattcatctcaggacccagactttgaa
gagaacgagttcatctacgatgatattgattttgaggagatcccccagccaatagtggca
acatctccaccaggtaacacggaagatgacattttccagcactcaagttctacgccgacc
tcaacgacgtcgtcttcacccatccctccctccccagctacttgcactacgaattcggaa
gatgaaaagaaaagaggtcgttcgacagacagcgaaatcagtcagtcgccagtcaagaca
aatcctgctttcttatttcagtcacctatcaagaacggaaatccatcttcatctctatcc
tcctcgtcctcattgtcatcgtcctcgggagcgtcttcaaactctttgatctccatggca
actataaccagcggtgcaagctcgacatcagggggcagcagccttttaggccatgtgatg
gcctcccatcagaactctggcagctacagttcagcaacccagcaacaatcgcaacaaagc
acgcatcagcaccagcccaaaaactcctcccagtccaacgctaactccgcctccaacaac
agtatcttaatcttgacaccaacatcgacctcaccgcctaacaccagcacaaccggccct
gtgacacccgtctcccagagccagacgggtttcggttccagtctgggcctggggaaaggt
acaccaacaagtggcgcaaaccagatccccggcctggtcctctcagggatgccggcatcc
ctgagcagcatggctgggtttttgagtccggcaccttatgctcaagcggccgcagcaggt
gctttgagcgtcgggttttcgggagcaaatgttagtagtaccaactccagtggagttgta
acatcaatgactgctaacggaagtctgagctccacgagcctcttgggttcggggcctggt
gtgttgggtctcgggttgacgcagtcttctgtggagcctctggtggttttaagccctgtg
ggaggtggactgacctcagggagcagtgtgggagttataggaagcaacatagggacctct
gggtcaggaagtgcaccggctatgggaagtgccgggttaccccgaccacctagtggaccg
aaacaaaatggcggtacaagttatagtgccgtggtagcggacagcacatctgactccatt
ctcaacagtgccacccaattgcaaaatagccaatctacatccttaaattcctcagcaaat
cagccaaaggacactgggtccagccttctggggtcgatgatgctgccgcccagctcgccc
tccccgtcatacagtgagagtaaaccagctggtggaagcctactgaatggacctcactcc
tatacacaggctgttgacaccatcaaggagcctccgagctctttaaaatccatggcagag
agggtagctcatggctcagggttagaagaagagctgtctgcactacatatcactagtgat
atatttcccaactccacgacttcatcgggcactcctgcagctcctcagtcatctgtatca
gaggtgaacatcccaccatcgttgggcgtgtgtccgcttggccctgcccccctttccaaa
gagcagctctaccagcaagccatgcaggagtctgcctggacgcacatgcctcgcccatct
gattcggagaggatcaggcagtacctgatgaggaatccttgcccaatactgcctttccac
caccagatgccacctactcactctgacactgtggagttctaccagagactgtccacagag
accctcttcttcatcttttattatttagagggtacgaaggcacagtatctagcagccaag
gccttgaaaaaacagtcatggaggtttcacacaaagtacatgatgtggtttcagaggcat
gaggagcccaagaccatcactgatgagtttgagcaggggacgtatatttactttgactat
gaaaaatggggccagaggaaaaaggaaggatttacatttgagtatagatatctcgaggac
cgagaccttcagtga
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