Triplophysa rosa: 130566775
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Entry
130566775 CDS
T09216
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
tros
Triplophysa rosa
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
130566775
NCBI-ProteinID:
XP_057210516
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Position
LG16:2390040..2439046
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AA seq
1619 aa
AA seq
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MEFRFGFRIILVLTTLALTLFGGGVEAQRAGCKNVHYDLVFILDTSSSVGKENFEKIRQW
VAKLVESFEIGADKTRVAVVRYSDRPTAEFNLGRYKTLEEVKRAAGNIRYLGGNTKTGDA
ISFTVNNIFTERTGARPAAKGFQKVAILVTDGKSQDYVLEPSVAAAAAGVRLFALGIGEA
LKEELEEIAAEPKNAHVFHVTDFDAIDKIRGRLRRRLCENVLCPNMKVQSGRFRPNSTSA
GQTEVPGFDLMEYFNVREFLGEKFEPGQTPYVRLGTMPIVQKTEDVLSQGLPDEYAFVTT
FKFRKTSRKDNWYLWQVYDKYGIPQVSIRLDGENRAVEYNAVGLTKDAVRAVFKNPEVDD
LFDRNWHKIGMRVDSKSVSLFLDCKHIETVPIEDREDIDIQGKTVIGKRVYDSVPIDFDL
QRMVIYCDGKQAEQETCCDVPGAPCEQTLVTEAPPLPLPTPKPTSAEQQKPATVNCSCPA
GERGQTGPQGVMGPKGEKGDPGLKGPEGPPGLKGERGERGEAVSIKGDRGEKGDRGEQGE
PGARGNRGERGLDGLPGLAGKHGDKGERGGQGLTGEAGLPGPLGPKGFQGDSGPPGKPGP
QGVSGSAGIKGEKGLSGDRGDPGLDGFPGKSGVPGKDGLKGLTGAPGTSGVKGERGERGL
PGIPGDAVQLDGLKGETGTPGPRGPPGADGPPGPPGPPGPQGLPGVSGENGQRGKKGDAG
LPGVDGLPGTLGPQGPSGPPGSPGQAGSAGLPGETGKAGKPGEPGLPGSDGLDGIPGNDG
ERGQRGEPGQDGFPGKPGPKGDEGPPGPQGPASERGEPGVAGQAGPVGPKGERGGQGERG
RDGPTGSNGEKGDKGDIGPRGPPGAPGNVADVIPEPGEPGRPGEKGEKGDQGKPGEMGKR
GLPGEQGFTGPPGLSGPKGDAGDKGEPGRNGDPGPPGLTGSQGPSGLPGNVGIPGSIGPP
GIAGQRGEKGDGGKDGPPGPHGPIGAPGLRGEIGLPGKSKEGPKGDTGPPGPAGPPGLKG
LPGPPGMQGMPGARGPPGDGTTGPPGPPGSPGPTGAAGLRGPPGVTGPQGPAGHNGLPGR
PGEKGSPGEQGKAADLSDLNLKDICRDCPPGPAGPPGIPGAPGEKGHTGPPGKNGQDGYQ
GQPGPTGPSGPPGADGAKGVKGDKGSSGAPGDKGEKGAPGPPGYPGAAGAMGPPGNDGNP
GPVGPPGAPGEKGKEGLKGIQGPPGLPGLMGMMGKPGKDGRPGEQGEPGKQGEPGPSGRD
GLRGMPGFKGHRGESGPPGSKGEDGKQGSPGREGPSGKDGNAGPPGQEGMRGPRGEPGQP
GEPGPAGKPGAQGNPGQAGHKGEAGSPGLPGFSGPKGPSGPAGPIGPEGKQGMPGKAGDR
GQKGEKGDNGIKGDKGPVGDPGIPGTSGPPGRKGHTGMMGMSGQPGEMGLAGPPGSPGQP
GFPGQRGETPSLEQLRRIIQEELSKQLDAKLAYLMAQMQPSHIKSTAGRPGPPGPSGKDG
PPGRQGPSGDPGMPGQNGAEGSRGPVGPKGERGTKGEKGEDGIGQRGETGPAGPIGPPGM
PGYGKDGLPGAAGAQGEPGNPGPHGQPGPSGPPGQCDPSQCAYYASLASRPHTKNVKGT
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggagtttcgatttgggttcaggatcatactggtcctgaccacactggctctgacacta
tttggaggaggcgttgaagcacaaagggcagggtgcaagaacgttcactatgacctggtt
ttcatcttggatacctcgtccagtgttggcaaggaaaactttgagaagatccgtcagtgg
gtagcaaaactggtggaatctttcgaaataggcgcggataaaacacgtgtggccgtcgtc
cgctacagcgaccgacccaccgccgaatttaacctgggcaggtacaaaaccctcgaggag
gtcaagcgtgccgctggaaacatacgctacctgggtgggaacaccaagactggagacgct
ataagtttcaccgtcaacaacatcttcacggagaggacgggagcacggcccgccgccaag
ggctttcagaaagtggccatcttggtaacggatggcaagagtcaagattacgttctggag
ccgtctgtggcggcagcggctgctggagtcaggttgtttgcgttggggatcggagaggcc
ctgaaggaggaactggaggagatcgccgccgagcccaaaaatgctcacgtgttccatgtg
acggacttcgacgccattgataagatcagggggaggttgaggaggagactctgcgagaat
gtcctgtgtcccaacatgaaggtccagtcgggacgattccggccgaacagcaccagtgct
ggacagacggaggtcccaggttttgatttgatggaatacttcaatgtgagagagtttctg
ggggagaagtttgagcctggtcagaccccctacgtgaggctcgggaccatgcccattgtc
caaaaaacagaagatgtgttatctcaaggtctacccgatgaatatgcctttgtgacaaca
tttaagttcaggaaaacatctcgtaaggataactggtacctgtggcaggtctatgacaaa
tacggcatcccgcaggtttccatccgtctggacggcgagaacagagcggtggagtacaat
gcagtgggtctgactaaggatgcggtccgggccgtctttaagaacccagaagtggacgac
ctgtttgaccgtaactggcataagatcggaatgagggtggactccaagtctgtgtcgctc
ttcttggactgcaaacacattgagacggtgcccatcgaggacagagaggatattgatatc
cagggaaagaccgtcatcggaaagagagtctacgacagcgtaccgattgactttgatctc
caaagaatggtgatctactgtgacggtaaacaggccgagcaggagacatgttgcgatgtt
cctggtgctccttgtgaacaaactctggtgaccgaggccccccctctcccattgcccacc
ccaaaacccaccagtgctgaacagcagaaaccagccacggtcaactgctcctgtcccgca
ggggaaaggggtcagacaggcccacagggtgtcatggggcccaagggtgaaaagggtgat
cctggtctcaaagggcctgagggaccaccaggactcaaaggggagagaggagagcgtggt
gaggctgtctctatcaaaggtgatagaggggaaaagggggacagaggtgagcagggcgaa
cccggagccagaggaaacaggggagagagaggtttagatggtttaccgggtctggctgga
aagcatggtgataaaggagagagaggtgggcaaggacttacaggtgaagctgggttacct
gggcccctcggaccaaagggtttccaaggtgattctggtcctccaggaaagccaggtcct
cagggggtctctggcagtgcaggaataaaaggagaaaagggattgtctggagatcggggt
gatccaggtctagatgggtttccaggaaaatctggagttccaggaaaagatggtctcaaa
gggttaaccggtgctcctggtacaagtggagtcaagggagaaaggggagagagaggactt
cctggaattcctggagatgcggttcaactggatggcctgaagggggaaactggcacccct
ggtcctcgaggaccccctggagcagacggacctcctggacctcctggccctcccggaccc
caaggtttgcccggagtgtctggcgagaacggacaaaggggtaagaaaggagatgcaggt
ttgccaggagtcgatgggcttcctggaacacttggacctcaggggccttctggacctcct
ggcagcccgggacaagcagggtctgccggcttacctggtgaaactggaaaggcagggaaa
ccaggagaaccgggccttccaggaagtgatggattagatggcatccctggaaatgatggc
gagaggggacaaagaggagaacctggacaggatggttttcctggcaaaccaggaccgaag
ggagatgaaggtcctccaggaccacaaggacctgcaagtgaacggggagagcccggtgta
gccggccaagcaggcccagtgggacccaaaggagagcgaggaggccagggagaaagagga
agagatggaccaactgggtccaatggagaaaaaggagacaagggtgacattgggcccagg
ggaccaccgggagctccagggaatgtggccgatgtgattcctgaaccaggcgaaccgggc
agacctggggaaaagggagagaaaggagaccaaggaaaaccaggcgagatgggtaaaaga
gggcttcctggagagcaaggattcacaggaccgccaggactttcggggcctaaaggtgat
gcgggtgataaaggggaacccgggagaaatggagacccaggtccaccaggattgacgggc
tctcagggtccctctgggctgccaggcaacgtgggcattccaggcagtattggtccacct
ggtattgctggacagagaggggagaagggtgatggaggcaaagacggcccccctggacca
catggtccaatcggtgcgcccggtttaagaggagaaatcggtttaccaggaaagagcaaa
gaaggaccgaagggtgacacgggacccccgggtccagctggacctccaggactgaagggt
ttgcccggtccaccgggaatgcagggaatgccgggagccagaggaccaccaggagatggg
accaccggacccccaggtcctcctggttctccagggcctaccggagctgcgggtttgaga
ggacctccgggtgtgaccggaccacagggtcccgctggacacaacggtttgcccggaaga
cctggagaaaagggttctcctggagaacagggaaaagctgcggatctttccgatctaaac
ctgaaggacatatgtcgagattgtcctccaggaccggctggacctccgggtatcccagga
gcaccgggagaaaaaggtcatactggaccacctggtaaaaacggtcaagacggttatcag
gggcaacctggaccaactggaccttcaggaccgcctggtgctgatggagccaagggggtc
aaaggtgacaaaggttcttcaggagcccctggagataaaggagagaagggtgctccagga
cctcctggttatccaggggccgcgggggcaatgggaccacctggtaatgatggaaaccca
gggcccgttggaccgccgggagcacctggagaaaagggtaaagagggtctaaagggaatt
cagggacctccgggacttccaggtctgatgggcatgatgggtaaacccggaaaggacggc
agaccgggagaacaaggagaaccgggcaaacagggcgagccaggaccatcgggtagagat
ggacttcgaggaatgcctggtttcaaaggccatagaggagaatcaggacctccagggtca
aagggcgaggatgggaagcagggttctcctgggcgtgaaggtccatcaggaaaagacggt
aacgcaggaccaccggggcaagagggcatgcgaggaccacgaggagaaccgggtcagccg
ggagaaccaggaccagcaggcaaacctggagctcagggcaatcctggtcaagcaggacac
aaaggggaagcgggcagcccgggattacctggtttttcaggtcctaaagggccgtcgggt
ccggctggtccaattggcccagagggaaaacaaggtatgccaggaaaagcaggggacagg
ggccaaaaaggagaaaagggtgataatggaataaagggtgacaaaggacccgtcggggat
ccgggcattccaggtacatctggacctccaggtaggaagggtcacacggggatgatgggt
atgtctggacaaccgggtgaaatgggtcttgccgggcctcctgggtccccgggacagccg
ggttttccaggacaaagaggcgagacgccatcactggaacaactgcggagaatcattcaa
gaggaactttccaaacaattagatgctaagttggcctacctcatggcccagatgcagccc
tcgcatataaagagcacggccgggcgtcccggtccacctggtccctcgggtaaagacgga
cctcccggtcgacagggcccatccggagaccctggaatgccaggacaaaatggagcagaa
ggatccagaggtccagtgggtcccaaaggtgaacgaggaacaaaaggtgaaaagggagag
gatggaattgggcagagaggagagactggtccagctggtcccattggtcctccaggaatg
ccgggatatggaaaagacggtcttcctggagccgcaggagctcagggagaacccggtaac
cctggtcctcacggtcagcccggaccatctggaccacccgggcagtgtgacccttcacag
tgtgcctactacgccagcctggcatcacgacctcacaccaaaaacgtcaaggggacttaa
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