Triplophysa rosa: 130566936
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Entry
130566936 CDS
T09216
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tros
Triplophysa rosa
Pathway
tros03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130566936 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130566936 (smarcc1b)
03036 Chromosome and associated proteins [BR:
tros03036
]
130566936 (smarcc1b)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130566936 (smarcc1b)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130566936 (smarcc1b)
PBAF complex
130566936 (smarcc1b)
GBAF(ncBAF) complex
130566936 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
DUF2476
DUF919
Motif
Other DBs
NCBI-GeneID:
130566936
NCBI-ProteinID:
XP_057210747
LinkDB
All DBs
Position
LG16:6987007..6995782
Genome browser
AA seq
947 aa
AA seq
DB search
MATQPHTTTSQTAFSPSLSRKKDGGPCSKFWECPEKISQLETVRSWIGKHYKKYVQADAP
SSKSLSGLVIQLLQFQEDSFGRRANNPGFTKLPAKCFLDLRPSGALCHILGSVYKFKTEQ
GWRRFDLQNPSRVDRNVEMFISIENSLIQNNLLSRPVVYLSPDLEQKQILKLKDIVLRHQ
GTVTEERLQATHQIYPSPSNIDEDEWFRPIMRLDRQMMVHWGMCPDSYDSILSASDVDGE
VEEPPNPDRCWKVHARWLLDTDTFNEWMNEEDYVIDENGNSVSFRRRIYQIEEKEQKFWK
KRRRSPSPSSSESRKKGGKKGSYKRRGQMDEAEPEEDLTKDMEDPTSVPNMEEVILPKNV
NLKKDSENTPVKGGIMADLDDQEEDLLSGVRDEEEPREFSRGMEGEESATEQIHHIIVPT
YASWFDYNCIHKIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSASSRR
NLTGDVCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLTDTPSGLVPLQHRP
LQVSASQHMLHFPEKSLEKPSDLQNFGLRIDIYARKHPKSKGASAGREWTEQETLLLLEA
LEMYKDDWNKVSEHVGSRTQDDCILHFLRLPIEDPYLENSEASMGPLAYQPVPFSQSGNP
VMSTVAFLASVVDPRVASAAAKAALEEFSRAREEAPIELFTVGFQKTQRVGHHLDSTFTL
QSGGIAGLDPDELEKTDGTGLEKMNIESEQHNKPDIDSVLVEGECVKNEEKEESEGERGE
ESAAEESFDMGHGDGEDFRRSAELELVEANITTAAAVALASAATKAKHLAAVEERKIKSL
VALLVETQMKKMEIKLRHFEELETIMDREKEALEQQRQQLLSERQNFHMEQVKCAEMKAR
QQVEQQQAGRSVGSAGTGQMMGARHPGAPNGMYQTPPSSQGDGAAPM
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atggccacacaacctcacacaacgacaagtcaaaccgcatttagcccctcgttgagccga
aaaaaggatggtgggccgtgcagtaaattttgggaatgccctgaaaaaatctctcagctg
gaaacggtccgcagttggattggaaagcattataaaaagtatgttcaggctgatgctcca
tccagtaagtctttgtctgggctggtcatccaactgctgcagtttcaagaggactctttt
ggccgccgagcaaataaccccggcttcacgaaacttcctgcaaagtgttttctggacctg
aggcccagtggtgccctctgtcatattctgggatcagtttacaagtttaagaccgaacag
ggctggagacgctttgatctacagaacccatctagagtggatcgtaatgttgagatgttc
atctccatcgagaattctctgatacagaataatttattaagcagacctgtagtgtacctg
tcccctgatttggaacaaaagcaaatcctcaaactcaaagacattgtcctgcggcatcag
ggcacagttacagaggagcggctgcaagccacccaccaaatatacccgtctccctcaaac
atagatgaagacgagtggtttagaccaatcatgcgattagatcggcagatgatggtgcac
tggggcatgtgtccagacagttatgactccattttgtcagcaagcgatgtagatggagaa
gtggaagaacctcccaacccagacagatgctggaaggttcatgccagatggcttctagac
actgacacatttaatgagtggatgaatgaagaagactatgtgatagatgagaatgggaat
agtgtgagtttccggcgccgtatctaccaaatcgaggagaaggaacagaaattttggaag
aagcggcggcgctcaccatctccatcttcctcagagtctaggaaaaagggaggaaagaaa
ggctcgtataagaggcgtggccagatggatgaggcggagccagaagaggacctcactaaa
gacatggaggatccaacatctgttcctaacatggaggaggtcatactgcctaaaaatgtg
aacctgaaaaaagacagtgaaaatactccagttaaaggagggattatggcagatttggat
gaccaggaagaggatctgttatctggtgtcagagatgaggaggaaccgagagagtttagc
cgtgggatggagggggaggaaagtgccacagaacaaatccatcacattattgtgcccacc
tatgcctcctggtttgactacaactgcattcacaaaatagagaggcgagcactgcctgag
ttcttcaatgggaaaaataaatccaaaacaccagaaatatatcttgcctaccgtaacttc
atgattgacacgtaccgactaaaccctcaagagtatctgacctcagcatccagcagacga
aacctgactggagatgtttgtgcacttataagagttcattcgtttttggagcagtggggg
ttgataaattatcaggtagatgcagagagtcgacccctccctatgggcccgcccccaacc
ccacacttcaatgttcttacagacactccttcaggacttgtaccgctgcagcacagaccc
ttacaggtttcagcatcccagcatatgttgcatttcccagagaagtcattagaaaagccg
tctgacctgcagaattttggtctgcgcattgacatttatgccaggaagcatcctaagagt
aaaggagcaagtgcaggaagagaatggacagaacaggaaacactgttgctattagaggct
ttagagatgtataaagacgactggaataaagtgtcagaacatgtaggcagccgtacacaa
gacgactgtattcttcatttcctccggttgcccatagaggacccgtacctggagaactcc
gaagcctcaatgggtcctcttgcctatcagcctgtccccttcagccaatcaggaaaccct
gtaatgagcaccgttgctttcctggcctctgtggttgaccctcgagtggcctctgcggct
gccaaggcagctttggaggagttctcgagagcaagagaggaagccccaattgagctattc
actgttggctttcaaaagacacagagagtcgggcatcatttagattcgacctttacgctg
caatcaggtggcatcgcaggacttgatcccgatgaattagaaaagactgatggaactggt
ctagaaaaaatgaacatcgaatctgagcagcacaacaagcctgatatcgacagcgtcttg
gtagagggagaatgtgtgaaaaacgaggagaaagaggagagtgaaggtgagagaggagaa
gagagcgcagcagaggagagttttgatatgggccacggggatggggaagactttagaagg
agtgcggagcttgaactggttgaggcaaacattactacagcagcagctgtagcactggcc
tctgcagctaccaaagctaagcacttggctgcggtagaagaaaggaagattaagtctctg
gtggctctgctggttgaaactcagatgaaaaagatggagatcaaactgagacactttgaa
gagctagagaccattatggatcgagaaaaagaggctttggagcagcagagacaacagtta
ttgtctgagaggcaaaacttccacatggagcaagtgaaatgtgcggaaatgaaggcacgg
cagcaagtagagcagcagcaagcaggtcgttcggtgggcagcgctggcaccggccagatg
atgggtgcccggcaccctggagctcccaacggcatgtaccaaactcccccatcctctcag
ggtgatggggcggcacccatgtga
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