Triplophysa rosa: 130566988
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Entry
130566988 CDS
T09216
Symbol
lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
tros
Triplophysa rosa
Pathway
tros03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130566988 (lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tros03400
]
130566988 (lig3)
Enzymes [BR:
tros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130566988 (lig3)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
130566988 (lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130566988
NCBI-ProteinID:
XP_057210828
LinkDB
All DBs
Position
LG2:5448841..5458726
Genome browser
AA seq
1007 aa
AA seq
DB search
MFSLCLGKSVRTFSTSSIPVLCRLTLLRHQYLHCSRIVIFSWGFPSSPSGISFCVPQTPR
FTLGSGSHFHTSWPNKLQRNQPEMAEQRFCVEYAKRGTAGCKKCKDKIVKGVVRIGKIVP
NPFSESAGEMKEWYHVKCMFEKLERARATTKKIEDITELEGWEELQDEDKDLINKHVSEL
AAKANASPKKKVQAKLNNSGLLSGPLADPTVNAPRKFSGFTATKAGSSSSSPGPSPAKPS
QGSALSAKLCDSNHKDCLLREFRKLCALVAEKSGYNAKTEIIRDFLTKGSGGDKFRGDLY
LTVKLLLPGVVKNVYNLNDKQIVKLFSRILNCSQDEMVHDLEQGDVSETVRMCFEASKSF
PPATKSLLTLQEVEASLNRLAQLTKEDDQQAELQDMAKKCTGNDLKCYIRLVKHDLKINS
GAKHVLDAVDPNAYDAFKASRNLGDVIDRVLKNHQDAANGTGPRKILSVEASLMTPVQPM
LAEACKSIEYAMKKCPNGMYSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDF
IPQAFPGGNTMILDAEVLLIDTKTSKPLPFGTLGVHKKAAFQDAQVGLFVFDCIYFNGVS
LMDKPLCERRKFLRDNMVEVPNRILFSEMKHVTRAADLAEMITRVIREGLEGLVLKDVKG
HYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGKGSNGGIMSSFLMGCYDPESKKWC
TVTKCSGGYDDATLARLQKELDVIKIGKDPSKIPGWLKIVKNYYPDFIIRDPQKAPVWEI
TGAEFSKSEMHTADGISIRFPRCTRMRDDKDWKTATNLQQLKELYRISKENCDFEVTAGP
SKTGQNEKSSSGGESGGSSPSTSSTGASTANKPKNGHTPKAKTVKSEPPSPAVKRTLPPE
KRSAKKIKTERNGQSKLNTSIQTTEPKNEKTLLDIFTGVKLYLPESVQDFAKLRRYFLSY
DGDLVPEFDSRSATHTLTEPEEDSQSQKVTSNWIWECIRKRRVVPPC
NT seq
3024 nt
NT seq
+upstream
nt +downstream
nt
atgttcagtctttgcttgggcaaatcagtaaggacattctccacatcatccatcccagtt
ctttgtaggctaactttattacgccatcaatatctccactgctctaggattgttatattt
agttggggctttccttctagccccagtggcatctctttctgtgtgccacaaacaccacga
tttactctcggctctggttcacatttccacacttcctggccaaataagttgcaaaggaac
cagccagagatggcagagcaaagattctgtgtagaatatgccaaacgtggcacagcgggc
tgcaagaaatgcaaagacaagattgttaagggggtggtccgtattggcaagatagtgcca
aacccgttcagcgagtctgctggagaaatgaaagagtggtaccatgtgaaatgcatgttc
gagaagcttgagagagctcgtgccaccacaaagaaaatcgaagacatcacagaactggag
ggatgggaggagcttcaggatgaggataaagatcttatcaataaacatgtttcagaattg
gcagccaaagccaatgcaagtccgaagaaaaaagtgcaagcaaagttaaacaacagcgga
cttctgtcaggaccactagctgaccccactgttaacgcccctcgcaagttttcaggcttc
acagctaccaaggctggttcctcttcctccagtcctgggccatctccagcgaaaccctct
cagggcagtgctttatcagctaagctatgtgactccaatcataaagactgcttactgcga
gagttccgcaaactgtgtgccttagtggcagagaagtcgggttacaatgcaaagactgag
attatcagggatttcttgacaaaaggctctggtggagataagtttagaggcgatctgtac
ctgacagtgaagctgcttctcccaggagtggtgaagaatgtctacaacctcaacgacaaa
caaattgtcaagcttttcagccgcatattgaattgcagtcaggatgaaatggtgcacgat
ctggaacagggagatgtttcagagactgtgcggatgtgttttgaggccagcaaatctttc
cccccagcaaccaaaagccttctgacccttcaggaagtggaagcttcactgaatcgtctt
gcccagctcaccaaggaagatgatcagcaggcagaactacaagatatggccaaaaaatgc
accggaaatgacttgaagtgttacatccgtctggtcaaacatgatctgaaaataaactct
ggcgctaagcatgtcctggatgctgtcgatcccaatgcttacgacgccttcaaagcctct
cgtaaccttggagatgtaattgacagggtactaaagaaccaccaagatgccgccaacggg
acagggcccagaaagatccttagtgtggaggcgtctctgatgacacctgtacagccaatg
ctggcggaggcatgtaaatccattgagtatgccatgaagaagtgtccaaatggcatgtac
tccgagatcaagtatgatggtgagcgtgtacaggtccataagaacggagatcacttcagt
tacttcagtcgtagtctcaaaccagtactcccacacaaggttgctcattttaaagacttc
ataccgcaggcgtttcctggtggtaataccatgattcttgatgctgaagttctacttatt
gacacaaagactagtaaacctctaccttttggaactcttggagtacacaagaaagccgct
ttccaggatgctcaagtgggtctttttgtgtttgactgcatttattttaatggcgtaagc
ctcatggacaaacctctttgtgagagaagaaagtttcttcgtgacaatatggtggaagtt
ccaaacaggattctgttctcagaaatgaagcatgttacgagagctgctgatttggcagaa
atgatcacacgtgtcattagagagggactggagggattggttctgaaagatgtcaagggc
cattatgagccaggaaagcgtcactggttaaaagtaaagaaggattatctgaatgaagga
gcgatggcagataccgctgatcttgtggtgcttggagctttctatggcaaaggctcaaat
ggtggaattatgtccagtttcctcatgggctgctatgacccagaatccaagaagtggtgc
accgtgaccaagtgttctggaggctatgatgacgcaaccttagccagactgcagaaggag
ctggatgttatcaaaatcggcaaagatccaagcaagataccagggtggttgaagattgtc
aagaactattatccagactttattatccgagatccacaaaaagcaccagtttgggaaatc
acaggagcagagttttctaaatcagaaatgcacacagcggacggcatatccatccgcttc
cctcgctgcacgcggatgcgagatgacaaagactggaaaaccgccactaatcttcagcag
ctcaaggaactgtatcgcatctccaaggagaactgtgattttgaggtgacagccggtcca
tctaaaaccggccagaatgaaaagagctcctcaggaggtgagagcggaggcagctcgccc
tcaacatcttccactggagcttctactgctaacaaacccaaaaacggtcatacccccaaa
gcaaaaacggtgaaatccgaaccaccctcaccagcagttaagaggacactaccgcctgaa
aaacgtagtgcaaagaagataaaaacagaacggaatggacaaagcaaactcaacacatca
attcaaacaaccgagccgaagaatgaaaagactttactggacattttcacaggggtgaag
ctctaccttcccgagtctgttcaggactttgctaagctccggcgctacttcttgtcatat
gacggagatttagtgccagagtttgactcgcgttcagccacacacacgctgacggagcca
gaggaggacagtcaaagccagaaagtcacttccaactggatctgggaatgtatacgcaag
agaagagtggttcctccctgttga
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