Triplophysa rosa: 130567262
Help
Entry
130567262 CDS
T09216
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tros
Triplophysa rosa
Pathway
tros03013
Nucleocytoplasmic transport
tros03015
mRNA surveillance pathway
tros03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130567262 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
130567262 (ddx39b)
03015 mRNA surveillance pathway
130567262 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130567262 (ddx39b)
03041 Spliceosome [BR:
tros03041
]
130567262 (ddx39b)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130567262 (ddx39b)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130567262 (ddx39b)
Spliceosome [BR:
tros03041
]
Complex C
Other components
EJC/TREX
130567262 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
130567262 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
130567262
NCBI-ProteinID:
XP_057211227
LinkDB
All DBs
Position
LG16:complement(16875181..16885239)
Genome browser
AA seq
441 aa
AA seq
DB search
MTENDVENELLDYEEDDVDATGPGDVVIGHEGTMSIRKEGVKGSYVSIHSSGFRDFLLKP
ELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV
SVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKRESPHVVVGTPG
RILALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSRE
IRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFV
KSVQRCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDIE
RVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDARTLNDVQDRFEVNISEL
PEEIDISSYSEEFVDCCETYI
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgagaacgacgttgagaacgagcttttagactatgaggaggatgatgtggatgca
acaggtcctggagacgtggtaattggacacgaaggcaccatgtccatcagaaaggaaggg
gtcaaagggtcatacgtgtccattcactcctcaggattccgagattttcttctaaaaccc
gagctcttgagagccatagtggactgtggcttcgaacacccatcagaggttcagcatgaa
tgtattccccaggcgatattgggaatggatgtattatgtcaggccaagtctggaatgggt
aagacagctgtctttgtgttggccacccttcagcagctggagccagtgactggtcaggtg
tcggtgttagtgatgtgccataccagagagctggcattccagatcagcaaagagtatgaa
cgcttttccaaatacatgcccagtgtcaaggtggcagtgttttttggtggtttatccata
aagaaggatgaggaggtgttgaagagagagagccctcacgtggtggtgggcacccctggt
cggatactagctctgtcccgcaacaagagcctcaacctgagacacatcaagcacttcatc
ctggacgaatgtgacaagatgctggaacaacttgacatgcgacgcgacgtccaggaaatc
tttcgcatgacccctcacgagaagcaggtcatgatgttcagtgcgaccctgagcagagag
atccgtcccgtctgcagaaagttcatgcaagatccgatggaaatttttgtggacgacgag
accaagctgacgcttcacggcctccagcagtactacgtcaagctgaaggacaatgagaag
aacaggaagctctttgatcttctggatgtgttggagttcaaccaggtggtgatctttgtg
aagtcagtgcagcgttgcattgctctggctcagctgctagtggagcaaaactttccggcc
attgctattcatagagcaatgcctcaagacgaaagactggctcgatatcagcaatttaaa
gatttccagagacggatcctggtggccacaaaccttttcggccgaggtatggacatcgaa
agagtcaacattgccttcaactacgacatgcctgaagattcagacacgtacctacacagg
gtggcgagagctggcaggtttggaacgaaaggtctggccatcacatttgtgtcagatgaa
ggtgacgcccgcactttgaatgatgttcaggacaggtttgaggtgaacatcagtgaactt
ccagaggagattgacatctcgtcatatagtgaggagtttgtggattgttgtgaaacatac
atttga
DBGET
integrated database retrieval system
